diff --git a/Biological_Environmental/Human_BioEnv_Metadata.md b/Biological_Environmental/Human_BioEnv_Metadata.md index 29fdad8..4098348 100644 --- a/Biological_Environmental/Human_BioEnv_Metadata.md +++ b/Biological_Environmental/Human_BioEnv_Metadata.md @@ -21,14 +21,16 @@ | | Microbial isolate | microbial isolate cultured?: Y/N | | | | | | | | Culture medium | Composition of processed material providing the needed nourishment for microorganisms or cells to grow in vitro. This field accepts terms listed under culture medium [\[OBI:0000079\]](https://www.ebi.ac.uk/ols4/ontologies/mco/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOBI_0000079?lang=en). If the proper descriptor is not listed please use text to describe the culture medium | [MIXS:0001216](https://w3id.org/mixs/0001216) | | e.g. minimal defined medium [\[MCO:0000881\]](https://www.ebi.ac.uk/ols4/ontologies/mco/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMCO_0000881?lang=en) | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), **MSI-ECWSG** ([Morrison et al. (2007)](https://doi.org/10.1007/s11306-007-0067-1)) | | | | chem_administration | List of chemical compounds administered to host where sampling occurred. Can include multiple compounds separated by \|. For compunds consult [chemical entities of biological interest ontology (chebi) (v 163)](http://purl.bioontology.org/ontology/chebi) | [MIXS:0000751](https://w3id.org/mixs/0000751) | | e.g. tetracycline [\[CHEBI:27902\]](http://purl.obolibrary.org/obo/CHEBI_27902);2023-12-11T19:41+01:00\|ampicilin[\[CHEBI:28971\]](http://purl.obolibrary.org/obo/CHEBI_28971);2023-12-11T19:41+01:00 | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/), [“GSC MIxS Human Associated; ENA Checklist: ERC000014”](https://www.ebi.ac.uk/ena/browser/view/ERC000014) | | -| **Host metadata** | host_name | Scientific name [\[NCBI taxonomy ID\]](https://www.ncbi.nlm.nih.gov/taxonomy) | [MIXS:0000029](https://w3id.org/mixs/0000029) | | e.g. *Homo sapiens* [\[NCBI:txid9606\]](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606&lvl=3&lin=f&keep=1&srchmode=1&unlock) | [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), **MSI-ECWSG** ([Morrison et al. (2007)](https://doi.org/10.1007/s11306-007-0067-1)) | | -| | host_common_name | Common name of the host | | | e.g. human, dog, cattle | [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/) | | -| | host_height | Height of host | | | e.g. 177 cm | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | -| | host_tot_mass | Total mass of host | | | e.g. 77 kg **OR** 3568 g | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | -| | host_body_site | Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc…). Recomended use of [FMA](https://www.ebi.ac.uk/ols4/ontologies/fma) or [UBERON](https://www.ebi.ac.uk/ols4/ontologies/uberon) ontologies. Multiple ontologies can apply, use \| to separate them. Ontologies should be specific enough to discern body site and goal. | | | e.g. gut [\[FMA:45615\]](http://purl.obolibrary.org/obo/FMA_45615) **OR** gut wall [\[UBERON:0000328\]](http://purl.obolibrary.org/obo/UBERON_0000328) | [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | -| | host_body_product | Bodily substance where the sample was obtained from. Recomended use of [FMA](https://www.ebi.ac.uk/ols4/ontologies/fma) or [UBERON](https://www.ebi.ac.uk/ols4/ontologies/uberon) ontologies. Multiple ontologies can apply, use \| to separate them | | | e.g. feces [\[FMA:64183\]](http://purl.obolibrary.org/obo/FMA_64183)\|urine[\[FMA:12274\]](http://purl.obolibrary.org/obo/FMA_12274) | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS Human Associated; ENA Checklist: ERC000014”](https://www.ebi.ac.uk/ena/browser/view/ERC000014), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | -| | host_age | Age of host at the time of sampling; relevant scale depends on study | | | e.g. year, day, hour | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS Human Associated; ENA Checklist: ERC000014”](https://www.ebi.ac.uk/ena/browser/view/ERC000014), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | -| | host_sex | Gender and/or physical sex of subject/host | | | | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | +| **Host metadata** | Host name **OR** host_taxid | Scientific name [\[NCBI taxonomy ID\]](https://www.ncbi.nlm.nih.gov/taxonomy) | [MIXS:0000250](https://w3id.org/mixs/0000250) | Expected_value: NCBI taxon identifier | e.g. *Canis lupus familiaris* [\[NCBI:txid9615\]](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9615), *Homo sapiens* [\[NCBI:txid9606\]](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606&lvl=3&lin=f&keep=1&srchmode=1&unlock) | **MSI-ECWSG** ([Morrison et al. (2007)](https://doi.org/10.1007/s11306-007-0067-1)) | | +| | host_common_name | Common name of the host | [MIXS:0000248](https://w3id.org/mixs/0000248) | free text string | e.g. human, dog, cattle | [“GSC MIxS: Host-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016002/) | | +| | host_height | Height of host or length of host | [host height \[MIXS:0000264#93;](https://w3id.org/mixs/0000264) | Preferred_unit: centimeter, millimeter, meter | e.g. 177 cm | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: Human-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016003/), [“GSC MIxS: Host-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016002/), [“GSC MIxS: Human-gutMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016004/), [“GSC MIxS: Human-oralMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016005/), [“GSC MIxS: Human-skinMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016006/), [“GSC MIxS: Human-vaginalMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016007/) | | +| | host_tot_mass | Total mass of the host at collection, the unit depends on host | [MIXS:0000263](https://w3id.org/mixs/0000263) | Preferred_unit: kilogram, gram | e.g. 77 kg **OR** 3568 g | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: Human-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016003/), [“GSC MIxS: Host-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016002/), [“GSC MIxS: Human-gutMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016004/), [“GSC MIxS: Human-oralMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016005/), [“GSC MIxS: Human-skinMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016006/), [“GSC MIxS: Human-vaginalMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016007/) | || | host_body_site | Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc…). Recomended use of [FMA](https://www.ebi.ac.uk/ols4/ontologies/fma) or [UBERON](https://www.ebi.ac.uk/ols4/ontologies/uberon) ontologies. Multiple ontologies can apply, use \| to separate them. Ontologies should be specific enough to discern body site and goal. | | | e.g. gut [\[FMA:45615\]](http://purl.obolibrary.org/obo/FMA_45615) **OR** gut wall [\[UBERON:0000328\]](http://purl.obolibrary.org/obo/UBERON_0000328) | [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | +| | host_body_site | Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc…). Recomended use of [FMA](https://www.ebi.ac.uk/ols4/ontologies/fma) or [UBERON](https://www.ebi.ac.uk/ols4/ontologies/uberon) ontologies | [MIXS:0000867](https://w3id.org/mixs/0000867) | ontologies, separated by “\|” if two or more apply | e.g. gut [\[FMA:45615\]](http://purl.obolibrary.org/obo/FMA_45615) **OR** gut wall [\[UBERON:0000328\]](http://purl.obolibrary.org/obo/UBERON_0000328) | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/) | | +| needs addintion | host_body_product | Bodily substance where the sample was obtained from. Recomended use of [FMA](https://www.ebi.ac.uk/ols4/ontologies/fma) or [UBERON](https://www.ebi.ac.uk/ols4/ontologies/uberon) ontologies. Multiple ontologies can apply, use \| to separate them | | | e.g. feces [\[FMA:64183\]](http://purl.obolibrary.org/obo/FMA_64183)\|urine[\[FMA:12274\]](http://purl.obolibrary.org/obo/FMA_12274) | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS Human Associated; ENA Checklist: ERC000014”](https://www.ebi.ac.uk/ena/browser/view/ERC000014), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | +| | host_age | Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees | [MIXS:0000255](https://w3id.org/mixs/0000255) | Preferred_unit: year, day, hour | e.g. 28 y, 30 d, 30 h, 12 s | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS Human Associated; ENA Checklist: ERC000014”](https://www.ebi.ac.uk/ena/browser/view/ERC000014), [“GSC MIxS: Human-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016003/), [“GSC MIxS: Host-associatedMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016002/), [“GSC MIxS: Human-gutMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016004/), [“GSC MIxS: Human-oralMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016005/), [“GSC MIxS: Human-skinMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016006/), [“GSC MIxS: Human-vaginalMIMS”](https://genomicsstandardsconsortium.github.io/mixs/0016007/) | | +| | Sex Assigned at Birth [NCIT:C205472](http://purl.obolibrary.org/obo/NCIT_C205472) | The male or female designation that doctors ascribe to a newborn infant, usually based on the appearance of the child's external genitalia, and that is marked on their birth records. | [NCIT:C205472](http://purl.obolibrary.org/obo/NCIT_C205472) | ontology | e.g. Assigned Male at Birth, Assigned Female at Birth, Intersex | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | +| | Gender [NCITC17357](http://purl.obolibrary.org/obo/NCIT_C17357) | The male or female designation that doctors ascribe to a newborn infant, usually based on the appearance of the child's external genitalia, and that is marked on their birth records. | [NCIT:C205472](http://purl.obolibrary.org/obo/NCIT_C205472) | ontology | e.g. Assigned Male at Birth, Assigned Female at Birth, Intersex + | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | | | host_diet | Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types. Recommended use diet [\[OMIT:0005302\]](http://purl.obolibrary.org/obo/OMIT_0005302) subclasses | | | e.g. diet, high-fat [\[OMIT:0027565\]](http://purl.obolibrary.org/obo/OMIT_0027565) **OR** diet, mediterranean [\[OMIT:0022848\]](http://purl.obolibrary.org/obo/ECOCORE_00000019) | [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | | | host_subject_id | A unique identifier by which each subject can be referred to, de-identified | | | e.g. s9s8 | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS Human Associated; ENA Checklist: ERC000014”](https://www.ebi.ac.uk/ena/browser/view/ERC000014), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | | | | host_disease_stat | Diagnosed diseases of host; can hold multiple values, separated by \|. Recommended use of [DOID ontoligies](https://www.ebi.ac.uk/ols4/ontologies/doid) | | | e.g. inflammatory bowel disease 1 [\[DOID:0110892\]](http://purl.obolibrary.org/obo/DOID_0110892)\|avian influenza [\[DOID:4492\]](http://purl.obolibrary.org/obo/DOID_4492) | [“MIMS: Metagenome/Environmental, Human-Associated; Version 6.0 Package”](https://www.ncbi.nlm.nih.gov/biosample/docs/packages/MIMS.me.human-associated.5.0/), [“GSC MIxS: MimsHumanAssociated”](https://genomicsstandardsconsortium.github.io/mixs/0010007_0016003/), [“GSC MIxS: MimsHostAssociated”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016002/), [“GSC MIxS: MimsHumanGut”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016004/), [“GSC MIxS: MimsHumanOral”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016005/), [“GSC MIxS: MimsHumanSkin”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016006/), [“GSC MIxS: MimsHumanVaginal”]( https://genomicsstandardsconsortium.github.io/mixs/0010007_0016007/) | |