| metadata | definition | reference of definition[<url_to_definition>] | expected unit of measurement | example | sources( where this or similar matadata field is mentioned) | |
|---|---|---|---|---|---|---|
| run_ref | Accessions/identifiers linking to the raw data (FASTQ) | Link to reference | run_accession in the format SRR, ERR or DRR | e.g. RUN_REF accession = “ERR178314” | Adapted from ENA (“ENA How to Submit Other Analyses: Submitting Read Alignments”) | |
| sop | Reference(s) to Standard operating procedures used in generation of data or assembly and/or annotation of genomes, metagenomes or environmental sequences and link to text explanation of procedure | MIXS:0000090 | PMID, DOI, URL | e.g. https://doi.org/10.1038/s41586-020-2192-1 | GSC MIXS: MIMARKSSpecimen (“GSC MIXS: MIMARKSSpecimen”) |
| Comments/questions: |
|---|
“ENA How to Submit Other Analyses: Submitting Read Alignments.” https://ena-docs.readthedocs.io/en/latest/submit/analyses/read-alignments.html.
“GSC MIXS: MIMARKSSpecimen.” https://genomicsstandardsconsortium.github.io/mixs/MIMARKSSpecimen/.