vibso.obo

format-version: 1.2
data-version: releases/2024-09-23
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synonymtypedef: OMO:0003000 "abbreviation"
synonymtypedef: OMO:0003001 "ambiguous synonym"
synonymtypedef: OMO:0003002 "dubious synonym"
synonymtypedef: OMO:0003003 "layperson synonym"
synonymtypedef: OMO:0003004 "plural form"
synonymtypedef: OMO:0003005 "UK spelling synonym"
synonymtypedef: OMO:0003006 "misspelling"
synonymtypedef: OMO:0003007 "misnomer"
synonymtypedef: OMO:0003008 "previous name"
synonymtypedef: OMO:0003009 "legal name"
synonymtypedef: OMO:0003010 "International Nonproprietary Name"
synonymtypedef: OMO:0003011 "latin term"
synonymtypedef: OMO:0003012 "acronym"
idspace: dce http://purl.org/dc/elements/1.1/ 
idspace: dcterms http://purl.org/dc/terms/ 
idspace: doap http://usefulinc.com/ns/doap# 
idspace: DOI http://doi.org/ 
idspace: ex https://example.instances/ 
idspace: foaf http://xmlns.com/foaf/0.1/ 
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# 
idspace: ORCID http://orcid.org/ 
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idspace: ROR http://ror.org/ 
idspace: schema http://schema.org/ 
idspace: schema1 https://schema.org/ 
idspace: skos http://www.w3.org/2004/02/skos/core# 
idspace: wikipedia https://en.wikipedia.org/wiki/ 
ontology: vibso
property_value: dcterms:contributor https://orcid.org/0000-0001-7694-5519
property_value: dcterms:contributor https://orcid.org/0000-0002-1595-3213
property_value: dcterms:contributor https://orcid.org/0000-0002-2239-3955
property_value: dcterms:contributor https://orcid.org/0000-0002-4378-6061
property_value: dcterms:creator https://www.wikidata.org/wiki/Q96678459
property_value: dcterms:creator "VIBSO Workgroup" xsd:string
property_value: dcterms:description "_WIP - NOT READY FOR PRODUCTION_ The Vibration Spectroscopy Ontology (VIBSO) is used to represent information regarding the excution and analysis of vibrational spectroscopy assays." xsd:string
property_value: dcterms:license https://creativecommons.org/licenses/by/4.0/
property_value: dcterms:title "Vibrational Spectroscopy Ontology" xsd:string
property_value: owl:versionInfo "2024-09-23" xsd:string

[Term]
id: BFO:0000001
name: entity
property_value: BFO:0000179 "entity" xsd:string
property_value: BFO:0000180 "Entity" xsd:string
property_value: IAO:0000112 "Julius Caesar" xsd:string
property_value: IAO:0000112 "the Second World War" xsd:string
property_value: IAO:0000112 "Verdi’s Requiem" xsd:string
property_value: IAO:0000112 "your body mass index" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" xsd:string
property_value: IAO:0000116 "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000004", comment="per discussion with Barry Smith", seeAlso="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"}
property_value: IAO:0000600 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/001-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000002
name: continuant
def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." []
is_a: BFO:0000001 ! entity
disjoint_from: BFO:0000003 ! occurrent
property_value: BFO:0000179 "continuant" xsd:string
property_value: BFO:0000180 "Continuant" xsd:string
property_value: IAO:0000111 "continuant" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" xsd:string
property_value: IAO:0000116 "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000007"}
property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl
property_value: IAO:0000600 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"}
property_value: IAO:0000601 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"}
property_value: IAO:0000601 "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"}
property_value: IAO:0000601 "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"}
property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"}
property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"}
property_value: IAO:0000602 "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"}
property_value: IAO:0000602 "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000003
name: occurrent
def: "An entity that has temporal parts and that happens, unfolds or develops through time." []
is_a: BFO:0000001 ! entity
property_value: BFO:0000179 "occurrent" xsd:string
property_value: BFO:0000180 "Occurrent" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." xsd:string
property_value: IAO:0000116 "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000006", comment="per discussion with Barry Smith"}
property_value: IAO:0000116 "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000012"}
property_value: IAO:0000600 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/077-002"}
property_value: IAO:0000601 "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"}
property_value: IAO:0000601 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"}
property_value: IAO:0000602 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"}
property_value: IAO:0000602 "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000004
name: independent continuant
def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." []
def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"}
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000031 ! generically dependent continuant
property_value: BFO:0000179 "ic" xsd:string
property_value: BFO:0000180 "IndependentContinuant" xsd:string
property_value: IAO:0000112 "a chair" xsd:string
property_value: IAO:0000112 "a heart" xsd:string
property_value: IAO:0000112 "a leg" xsd:string
property_value: IAO:0000112 "a molecule" xsd:string
property_value: IAO:0000112 "a spatial region" xsd:string
property_value: IAO:0000112 "an atom" xsd:string
property_value: IAO:0000112 "an orchestra." xsd:string
property_value: IAO:0000112 "an organism" xsd:string
property_value: IAO:0000112 "the bottom right portion of a human torso" xsd:string
property_value: IAO:0000112 "the interior of your mouth" xsd:string
property_value: IAO:0000601 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"}
property_value: IAO:0000601 "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"}
property_value: IAO:0000602 "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"}
property_value: IAO:0000602 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"}
property_value: IAO:0000602 "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000006
name: spatial region
is_a: BFO:0000141 ! immaterial entity
disjoint_from: BFO:0000029 ! site
disjoint_from: BFO:0000140 ! continuant fiat boundary
property_value: BFO:0000179 "s-region" xsd:string
property_value: BFO:0000180 "SpatialRegion" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Spatial regions do not participate in processes." xsd:string
property_value: IAO:0000116 "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000002", comment="per discussion with Barry Smith"}
property_value: IAO:0000600 "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/035-001"}
property_value: IAO:0000601 "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/036-001"}
property_value: IAO:0000602 "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/036-001"}
property_value: IAO:0000602 "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/035-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000008
name: temporal region
is_a: BFO:0000003 ! occurrent
disjoint_from: BFO:0000011 ! spatiotemporal region
disjoint_from: BFO:0000015 ! process
disjoint_from: BFO:0000035 ! process boundary
property_value: BFO:0000179 "t-region" xsd:string
property_value: BFO:0000180 "TemporalRegion" xsd:string
property_value: IAO:0000116 "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000003", comment="per discussion with Barry Smith"}
property_value: IAO:0000600 "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/100-001"}
property_value: IAO:0000601 "All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/101-001"}
property_value: IAO:0000601 "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/119-002"}
property_value: IAO:0000602 "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/119-002"}
property_value: IAO:0000602 "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/101-001"}
property_value: IAO:0000602 "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/100-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000009
name: two-dimensional spatial region
is_a: BFO:0000006 ! spatial region
disjoint_from: BFO:0000028 ! three-dimensional spatial region
property_value: BFO:0000179 "2d-s-region" xsd:string
property_value: BFO:0000180 "TwoDimensionalSpatialRegion" xsd:string
property_value: IAO:0000112 "an infinitely thin plane in space." xsd:string
property_value: IAO:0000112 "the surface of a sphere-shaped part of space" xsd:string
property_value: IAO:0000600 "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/039-001"}
property_value: IAO:0000602 "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/039-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000011
name: spatiotemporal region
is_a: BFO:0000003 ! occurrent
property_value: BFO:0000179 "st-region" xsd:string
property_value: BFO:0000180 "SpatiotemporalRegion" xsd:string
property_value: IAO:0000112 "the spatiotemporal region occupied by a human life" xsd:string
property_value: IAO:0000112 "the spatiotemporal region occupied by a process of cellular meiosis." xsd:string
property_value: IAO:0000112 "the spatiotemporal region occupied by the development of a cancer tumor" xsd:string
property_value: IAO:0000600 "A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/095-001"}
property_value: IAO:0000601 "All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/096-001"}
property_value: IAO:0000601 "Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/099-001"}
property_value: IAO:0000601 "Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/098-001"}
property_value: IAO:0000601 "Every spatiotemporal region occupies_spatiotemporal_region itself." xsd:string
property_value: IAO:0000601 "Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/107-002"}
property_value: IAO:0000602 "(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/107-002"}
property_value: IAO:0000602 "(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/099-001"}
property_value: IAO:0000602 "(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/096-001"}
property_value: IAO:0000602 "(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/098-001"}
property_value: IAO:0000602 "(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/095-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000015
name: process
def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." []
def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"}
is_a: BFO:0000003 ! occurrent
property_value: BFO:0000179 "process" xsd:string
property_value: BFO:0000180 "Process" xsd:string
property_value: IAO:0000112 "a process of cell-division, \\ a beating of the heart" xsd:string
property_value: IAO:0000112 "a process of meiosis" xsd:string
property_value: IAO:0000112 "a process of sleeping" xsd:string
property_value: IAO:0000112 "the course of a disease" xsd:string
property_value: IAO:0000112 "the flight of a bird" xsd:string
property_value: IAO:0000112 "the life of an organism" xsd:string
property_value: IAO:0000112 "your process of aging." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)" xsd:string
property_value: IAO:0000602 "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000016
name: disposition
is_a: BFO:0000017 ! realizable entity
disjoint_from: BFO:0000023 ! role
property_value: BFO:0000179 "disposition" xsd:string
property_value: BFO:0000180 "Disposition" xsd:string
property_value: IAO:0000112 "an atom of element X has the disposition to decay to an atom of element Y" xsd:string
property_value: IAO:0000112 "certain people have a predisposition to colon cancer" xsd:string
property_value: IAO:0000112 "children are innately disposed to categorize objects in certain ways." xsd:string
property_value: IAO:0000112 "the cell wall is disposed to filter chemicals in endocytosis and exocytosis" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type." xsd:string
property_value: IAO:0000600 "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"}
property_value: IAO:0000601 "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"}
property_value: IAO:0000602 "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"}
property_value: IAO:0000602 "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000017
name: realizable entity
def: "A specifically dependent continuant  that inheres in continuant  entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." []
is_a: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000019 ! quality
property_value: BFO:0000179 "realizable" xsd:string
property_value: BFO:0000180 "RealizableEntity" xsd:string
property_value: IAO:0000112 "the disposition of this piece of metal to conduct electricity." xsd:string
property_value: IAO:0000112 "the disposition of your blood to coagulate" xsd:string
property_value: IAO:0000112 "the function of your reproductive organs" xsd:string
property_value: IAO:0000112 "the role of being a doctor" xsd:string
property_value: IAO:0000112 "the role of this boundary to delineate where Utah and Colorado meet" xsd:string
property_value: IAO:0000600 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"}
property_value: IAO:0000601 "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"}
property_value: IAO:0000602 "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"}
property_value: IAO:0000602 "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000018
name: zero-dimensional spatial region
is_a: BFO:0000006 ! spatial region
disjoint_from: BFO:0000028 ! three-dimensional spatial region
property_value: BFO:0000179 "0d-s-region" xsd:string
property_value: BFO:0000180 "ZeroDimensionalSpatialRegion" xsd:string
property_value: IAO:0000600 "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/037-001"}
property_value: IAO:0000602 "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/037-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000019
name: quality
is_a: BFO:0000020 ! specifically dependent continuant
property_value: BFO:0000179 "quality" xsd:string
property_value: BFO:0000180 "Quality" xsd:string
property_value: IAO:0000111 "quality" xsd:string
property_value: IAO:0000112 "the ambient temperature of this portion of air" xsd:string
property_value: IAO:0000112 "the color of a tomato" xsd:string
property_value: IAO:0000112 "the length of the circumference of your waist" xsd:string
property_value: IAO:0000112 "the mass of this piece of gold." xsd:string
property_value: IAO:0000112 "the shape of your nose" xsd:string
property_value: IAO:0000112 "the shape of your nostril" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl
property_value: IAO:0000600 "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/055-001"}
property_value: IAO:0000601 "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/105-001"}
property_value: IAO:0000602 "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/105-001"}
property_value: IAO:0000602 "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/055-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000020
name: specifically dependent continuant
def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." []
def: "b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1  i < j  n, ci  and cj share no common parts, are such that for each 1  i  n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/131-004"}
def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"}
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000031 ! generically dependent continuant
property_value: BFO:0000179 "sdc" xsd:string
property_value: BFO:0000180 "SpecificallyDependentContinuant" xsd:string
property_value: IAO:0000111 "specifically dependent continuant" xsd:string
property_value: IAO:0000112 "of one-sided specifically dependent continuants: the mass of this tomato" xsd:string
property_value: IAO:0000112 "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." xsd:string
property_value: IAO:0000112 "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" xsd:string
property_value: IAO:0000112 "the disposition of this fish to decay" xsd:string
property_value: IAO:0000112 "the function of this heart: to pump blood" xsd:string
property_value: IAO:0000112 "the mutual dependence of proton donors and acceptors in chemical reactions [79" xsd:string
property_value: IAO:0000112 "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" xsd:string
property_value: IAO:0000112 "the pink color of a medium rare piece of grilled filet mignon at its center" xsd:string
property_value: IAO:0000112 "the role of being a doctor" xsd:string
property_value: IAO:0000112 "the shape of this hole." xsd:string
property_value: IAO:0000112 "the smell of this portion of mozzarella" xsd:string
property_value: IAO:0000116 "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000005", comment="per discussion with Barry Smith"}
property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl
property_value: IAO:0000602 "(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/131-004"}
property_value: IAO:0000602 "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000023
name: role
def: "A realizable entity  the manifestation of which brings about some result or end that is not essential to a continuant  in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant  in some kinds of natural, social or institutional contexts." []
is_a: BFO:0000017 ! realizable entity
property_value: BFO:0000179 "role" xsd:string
property_value: BFO:0000180 "Role" xsd:string
property_value: IAO:0000112 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." xsd:string
property_value: IAO:0000112 "the priest role" xsd:string
property_value: IAO:0000112 "the role of a boundary to demarcate two neighboring administrative territories" xsd:string
property_value: IAO:0000112 "the role of a building in serving as a military target" xsd:string
property_value: IAO:0000112 "the role of a stone in marking a property boundary" xsd:string
property_value: IAO:0000112 "the role of subject in a clinical trial" xsd:string
property_value: IAO:0000112 "the student role" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals –  professor, sergeant, nurse – only during certain phases in their lives." xsd:string
property_value: IAO:0000600 "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/061-001"}
property_value: IAO:0000602 "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/061-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000024
name: fiat object part
is_a: BFO:0000040 ! material entity
property_value: BFO:0000179 "fiat-object-part" xsd:string
property_value: BFO:0000180 "FiatObjectPart" xsd:string
property_value: IAO:0000112 "or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29" xsd:string
property_value: IAO:0000112 "the division of the brain into regions" xsd:string
property_value: IAO:0000112 "the division of the planet into hemispheres" xsd:string
property_value: IAO:0000112 "the dorsal and ventral surfaces of the body" xsd:string
property_value: IAO:0000112 "the FMA:regional parts of an intact human body." xsd:string
property_value: IAO:0000112 "the upper and lower lobes of the left lung" xsd:string
property_value: IAO:0000112 "the Western hemisphere of the Earth" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions" xsd:string
property_value: IAO:0000600 "b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of  c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/027-004"}
property_value: IAO:0000602 "(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/027-004"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000026
name: one-dimensional spatial region
is_a: BFO:0000006 ! spatial region
disjoint_from: BFO:0000028 ! three-dimensional spatial region
property_value: BFO:0000179 "1d-s-region" xsd:string
property_value: BFO:0000180 "OneDimensionalSpatialRegion" xsd:string
property_value: IAO:0000112 "an edge of a cube-shaped portion of space." xsd:string
property_value: IAO:0000600 "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/038-001"}
property_value: IAO:0000602 "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/038-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000027
name: object aggregate
is_a: BFO:0000040 ! material entity
property_value: BFO:0000179 "object-aggregate" xsd:string
property_value: BFO:0000180 "ObjectAggregate" xsd:string
property_value: IAO:0000112 "a collection of cells in a blood biobank." xsd:string
property_value: IAO:0000112 "a swarm of bees is an aggregate of members who are linked together through natural bonds" xsd:string
property_value: IAO:0000112 "a symphony orchestra" xsd:string
property_value: IAO:0000112 "an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)" xsd:string
property_value: IAO:0000112 "defined by fiat: the aggregate of members of an organization" xsd:string
property_value: IAO:0000112 "defined through physical attachment: the aggregate of atoms in a lump of granite" xsd:string
property_value: IAO:0000112 "defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container" xsd:string
property_value: IAO:0000112 "defined via attributive delimitations such as: the patients in this hospital" xsd:string
property_value: IAO:0000112 "the aggregate of bearings in a constant velocity axle joint" xsd:string
property_value: IAO:0000112 "the aggregate of blood cells in your body" xsd:string
property_value: IAO:0000112 "the nitrogen atoms in the atmosphere" xsd:string
property_value: IAO:0000112 "the restaurants in Palo Alto" xsd:string
property_value: IAO:0000112 "your collection of Meissen ceramic plates." xsd:string
property_value: IAO:0000116 "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000301"}
property_value: IAO:0000116 "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000011"}
property_value: IAO:0000116 "BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee)." xsd:string
property_value: IAO:0000119 "ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000300"}
property_value: IAO:0000600 "b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/025-004"}
property_value: IAO:0000602 "(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/025-004"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000028
name: three-dimensional spatial region
is_a: BFO:0000006 ! spatial region
property_value: BFO:0000179 "3d-s-region" xsd:string
property_value: BFO:0000180 "ThreeDimensionalSpatialRegion" xsd:string
property_value: IAO:0000112 "a cube-shaped region of space" xsd:string
property_value: IAO:0000112 "a sphere-shaped region of space," xsd:string
property_value: IAO:0000600 "A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/040-001"}
property_value: IAO:0000602 "(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/040-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000029
name: site
is_a: BFO:0000141 ! immaterial entity
property_value: BFO:0000179 "site" xsd:string
property_value: BFO:0000180 "Site" xsd:string
property_value: IAO:0000112 "a hole in the interior of a portion of cheese" xsd:string
property_value: IAO:0000112 "a rabbit hole" xsd:string
property_value: IAO:0000112 "an air traffic control region defined in the airspace above an airport" xsd:string
property_value: IAO:0000112 "Manhattan Canyon)" xsd:string
property_value: IAO:0000112 "the cockpit of an aircraft" xsd:string
property_value: IAO:0000112 "the Grand Canyon" xsd:string
property_value: IAO:0000112 "the hold of a ship" xsd:string
property_value: IAO:0000112 "the interior of a kangaroo pouch" xsd:string
property_value: IAO:0000112 "the interior of the trunk of your car" xsd:string
property_value: IAO:0000112 "the interior of your bedroom" xsd:string
property_value: IAO:0000112 "the interior of your office" xsd:string
property_value: IAO:0000112 "the interior of your refrigerator" xsd:string
property_value: IAO:0000112 "the lumen of your gut" xsd:string
property_value: IAO:0000112 "the Piazza San Marco" xsd:string
property_value: IAO:0000112 "your left nostril (a fiat part – the opening – of your left nasal cavity)" xsd:string
property_value: IAO:0000600 "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/034-002"}
property_value: IAO:0000602 "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/034-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000030
name: object
is_a: BFO:0000040 ! material entity
property_value: BFO:0000179 "object" xsd:string
property_value: BFO:0000180 "Object" xsd:string
property_value: IAO:0000112 "atom" xsd:string
property_value: IAO:0000112 "cell" xsd:string
property_value: IAO:0000112 "cells and organisms" xsd:string
property_value: IAO:0000112 "engineered artifacts" xsd:string
property_value: IAO:0000112 "grain of sand" xsd:string
property_value: IAO:0000112 "molecule" xsd:string
property_value: IAO:0000112 "organelle" xsd:string
property_value: IAO:0000112 "organism" xsd:string
property_value: IAO:0000112 "planet" xsd:string
property_value: IAO:0000112 "solid portions of matter" xsd:string
property_value: IAO:0000112 "star" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: an object is a maximal causally unified material entity" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74" xsd:string
property_value: IAO:0000600 "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/024-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000031
name: generically dependent continuant
def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." []
def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/074-001"}
is_a: BFO:0000002 ! continuant
property_value: BFO:0000179 "gdc" xsd:string
property_value: BFO:0000180 "GenericallyDependentContinuant" xsd:string
property_value: IAO:0000112 "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity." xsd:string
property_value: IAO:0000112 "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop" xsd:string
property_value: IAO:0000112 "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule." xsd:string
property_value: IAO:0000602 "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/074-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000034
name: function
is_a: BFO:0000016 ! disposition
property_value: BFO:0000179 "function" xsd:string
property_value: BFO:0000180 "Function" xsd:string
property_value: IAO:0000112 "the function of a hammer to drive in nails" xsd:string
property_value: IAO:0000112 "the function of a heart pacemaker to regulate the beating of a heart through electricity" xsd:string
property_value: IAO:0000112 "the function of amylase in saliva to break down starch into sugar" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc." xsd:string
property_value: IAO:0000600 "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"}
property_value: IAO:0000602 "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000035
name: process boundary
def: "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/084-001"}
is_a: BFO:0000003 ! occurrent
property_value: BFO:0000179 "p-boundary" xsd:string
property_value: BFO:0000180 "ProcessBoundary" xsd:string
property_value: IAO:0000112 "the boundary between the 2nd and 3rd year of your life." xsd:string
property_value: IAO:0000601 "Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/085-002"}
property_value: IAO:0000602 "(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/085-002"}
property_value: IAO:0000602 "(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/084-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000038
name: one-dimensional temporal region
is_a: BFO:0000008 ! temporal region
disjoint_from: BFO:0000148 ! zero-dimensional temporal region
property_value: BFO:0000179 "1d-t-region" xsd:string
property_value: BFO:0000180 "OneDimensionalTemporalRegion" xsd:string
property_value: IAO:0000112 "the temporal region during which a process occurs." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks)." xsd:string
property_value: IAO:0000600 "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/103-001"}
property_value: IAO:0000602 "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/103-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000040
name: material entity
def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." []
is_a: BFO:0000004 ! independent continuant
disjoint_from: BFO:0000141 ! immaterial entity
property_value: BFO:0000179 "material" xsd:string
property_value: BFO:0000180 "MaterialEntity" xsd:string
property_value: IAO:0000111 "material entity" xsd:string
property_value: IAO:0000112 "a flame" xsd:string
property_value: IAO:0000112 "a forest fire" xsd:string
property_value: IAO:0000112 "a human being" xsd:string
property_value: IAO:0000112 "a hurricane" xsd:string
property_value: IAO:0000112 "a photon" xsd:string
property_value: IAO:0000112 "a puff of smoke" xsd:string
property_value: IAO:0000112 "a sea wave" xsd:string
property_value: IAO:0000112 "a tornado" xsd:string
property_value: IAO:0000112 "an aggregate of human beings." xsd:string
property_value: IAO:0000112 "an energy wave" xsd:string
property_value: IAO:0000112 "an epidemic" xsd:string
property_value: IAO:0000112 "the undetached arm of a human being" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ido.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: IAO:0000600 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"}
property_value: IAO:0000601 "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"}
property_value: IAO:0000601 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"}
property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"}
property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"}
property_value: IAO:0000602 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000140
name: continuant fiat boundary
def: "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/029-001"}
is_a: BFO:0000141 ! immaterial entity
property_value: BFO:0000179 "cf-boundary" xsd:string
property_value: BFO:0000180 "ContinuantFiatBoundary" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions." xsd:string
property_value: IAO:0000116 "Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000008"}
property_value: IAO:0000601 "Every continuant fiat boundary is located at some spatial region at every time at which it exists" xsd:string
property_value: IAO:0000602 "(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/029-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000141
name: immaterial entity
is_a: BFO:0000004 ! independent continuant
property_value: BFO:0000179 "immaterial" xsd:string
property_value: BFO:0000180 "ImmaterialEntity" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000142
name: one-dimensional continuant fiat boundary
is_a: BFO:0000140 ! continuant fiat boundary
disjoint_from: BFO:0000146 ! two-dimensional continuant fiat boundary
disjoint_from: BFO:0000147 ! zero-dimensional continuant fiat boundary
property_value: BFO:0000179 "1d-cf-boundary" xsd:string
property_value: BFO:0000180 "OneDimensionalContinuantFiatBoundary" xsd:string
property_value: IAO:0000112 "all geopolitical boundaries" xsd:string
property_value: IAO:0000112 "all lines of latitude and longitude" xsd:string
property_value: IAO:0000112 "The Equator" xsd:string
property_value: IAO:0000112 "the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin." xsd:string
property_value: IAO:0000112 "the median sulcus of your tongue" xsd:string
property_value: IAO:0000600 "a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/032-001"}
property_value: IAO:0000602 "(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/032-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000144
name: process profile
def: "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/093-002"}
is_a: BFO:0000015 ! process
disjoint_from: BFO:0000182 ! history
property_value: BFO:0000179 "process-profile" xsd:string
property_value: BFO:0000180 "ProcessProfile" xsd:string
property_value: IAO:0000112 "On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels" xsd:string
property_value: IAO:0000112 "One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from   rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance." xsd:string
property_value: IAO:0000112 "The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on." xsd:string
property_value: IAO:0000600 "b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/094-005"}
property_value: IAO:0000602 "(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/094-005"}
property_value: IAO:0000602 "(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/093-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000145
name: relational quality
def: "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/057-001"}
is_a: BFO:0000019 ! quality
property_value: BFO:0000179 "r-quality" xsd:string
property_value: BFO:0000180 "RelationalQuality" xsd:string
property_value: IAO:0000112 "a marriage bond, an instance of requited love, an obligation between one person and another." xsd:string
property_value: IAO:0000112 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." xsd:string
property_value: IAO:0000602 "(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/057-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000146
name: two-dimensional continuant fiat boundary
is_a: BFO:0000140 ! continuant fiat boundary
property_value: BFO:0000179 "2d-cf-boundary" xsd:string
property_value: BFO:0000180 "TwoDimensionalContinuantFiatBoundary" xsd:string
property_value: IAO:0000600 "a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/033-001"}
property_value: IAO:0000602 "(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/033-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000147
name: zero-dimensional continuant fiat boundary
is_a: BFO:0000140 ! continuant fiat boundary
property_value: BFO:0000179 "0d-cf-boundary" xsd:string
property_value: BFO:0000180 "ZeroDimensionalContinuantFiatBoundary" xsd:string
property_value: IAO:0000112 "the geographic North Pole" xsd:string
property_value: IAO:0000112 "the point of origin of some spatial coordinate system." xsd:string
property_value: IAO:0000112 "the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet" xsd:string
property_value: IAO:0000116 "zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000001", comment="requested by Melanie Courtot", seeAlso="ZDRnpiIi:TUJ"}
property_value: IAO:0000600 "a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/031-001"}
property_value: IAO:0000602 "(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/031-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000148
name: zero-dimensional temporal region
is_a: BFO:0000008 ! temporal region
property_value: BFO:0000179 "0d-t-region" xsd:string
property_value: BFO:0000180 "ZeroDimensionalTemporalRegion" xsd:string
property_value: IAO:0000112 "a temporal region that is occupied by a process boundary" xsd:string
property_value: IAO:0000112 "right now" xsd:string
property_value: IAO:0000112 "the moment at which a child is born" xsd:string
property_value: IAO:0000112 "the moment at which a finger is detached in an industrial accident" xsd:string
property_value: IAO:0000112 "the moment of death." xsd:string
property_value: IAO:0000118 "temporal instant." xsd:string
property_value: IAO:0000600 "A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/102-001"}
property_value: IAO:0000602 "(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/102-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000182
name: history
is_a: BFO:0000015 ! process
property_value: BFO:0000179 "history" xsd:string
property_value: BFO:0000180 "History" xsd:string
property_value: IAO:0000600 "A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/138-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: CHEBI:24431
name: chemical entity
namespace: chebi_ontology
def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." []
subset: 3_STAR
synonym: "chemical entity" EXACT [UniProt]
is_a: BFO:0000040 ! material entity

[Term]
id: CHEBI:59999
name: chemical substance
namespace: chebi_ontology
def: "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types." []
subset: 3_STAR
synonym: "Chemische Substanz" RELATED [ChEBI]
is_a: CHEBI:24431 ! chemical entity

[Term]
id: CHEBI:60004
name: mixture
namespace: chebi_ontology
def: "A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind." []
subset: 3_STAR
synonym: "Mischung" RELATED [ChEBI]
is_a: CHEBI:59999 ! chemical substance

[Term]
id: CHMO:0000049
name: chemical imaging
def: "The simultaneous measurement of spectra and images. A radiation source illuminates the sample and a series of spatially resolved spectra are collected." [https://orcid.org/0000-0002-0640-0422]
synonym: "chemical imaging spectrometry" EXACT []
synonym: "chemical imaging spectroscopy" EXACT []
synonym: "CIS" EXACT []
synonym: "hyperspectral imaging" EXACT []
synonym: "imaging spectrometry" EXACT []
synonym: "imaging spectroscopy" EXACT []
synonym: "multispectral imaging" EXACT []
synonym: "spectral imaging" EXACT []
synonym: "spectroscopic imaging" EXACT []
is_a: OBI:0000185 ! imaging assay

[Term]
id: CHMO:0000056
name: Raman microscopy
alt_id: CHMO:0000673
alt_id: FIX:0000697
def: "The collection of spatially resolved Raman spectra of a sample during optical microscopy." [https://doi.org/10.1039/b815117b]
synonym: "laser Raman microanalysis" EXACT []
synonym: "LRMA" EXACT []
synonym: "micro Raman spectrometry" EXACT []
synonym: "micro Raman spectroscopy" EXACT []
synonym: "micro-Raman spectrometry" EXACT []
synonym: "micro-Raman spectroscopy" EXACT []
synonym: "MRS" EXACT []
synonym: "Raman chemical imaging spectrometry" EXACT []
synonym: "Raman chemical imaging spectroscopy" EXACT []
synonym: "Raman imaging" EXACT []
synonym: "Raman mapping" EXACT []
synonym: "Raman micro spectrometry" EXACT []
synonym: "Raman micro spectroscopy" EXACT []
synonym: "Raman microprobe spectroscopy" EXACT []
synonym: "Raman microspectrometry" EXACT []
synonym: "Raman microspectroscopy" EXACT []
synonym: "Raman spectral imaging" EXACT []
synonym: "RCIS" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy
is_a: CHMO:0001818 ! vibrational microscopy
intersection_of: CHMO:0000102 {comment="Equivalence asserted manually in VIBSO based on the textual definition of this class.", isDefinedBy="http://purl.obolibrary.org/obo/vibso.owl"} ! light microscopy assay
intersection_of: CHMO:0000656 {comment="Equivalence asserted manually in VIBSO based on the textual definition of this class.", isDefinedBy="http://purl.obolibrary.org/obo/vibso.owl"} ! Raman spectroscopy

[Term]
id: CHMO:0000067
name: microscopy
alt_id: FIX:0000005
def: "Any technique where a microscope is used to view a small object (or specimen) by producing a magnified image." [https://orcid.org/0000-0002-0640-0422]
is_a: OBI:0000185 ! imaging assay
equivalent_to: OBI:0002119 {comment="Equivalence asserted manually in VIBSO based on the definitions of both classes.", isDefinedBy="http://purl.obolibrary.org/obo/vibso.owl"} ! microscopy assay
relationship: BFO:0000057 CHMO:0000953 ! microscope

[Term]
id: CHMO:0000102
name: light microscopy assay
name: optical microscopy
alt_id: FIX:0000113
def: "Microscopy where the specimen is illuminated with visible light and a system of lenses is used to produce an image." [https://orcid.org/0000-0002-0640-0422]
synonym: "light microscopy" EXACT []
synonym: "OM" EXACT []
is_a: CHMO:0000067 ! microscopy
is_a: OBI:0002119 ! microscopy assay
property_value: IAO:0000118 "light microscopy" xsd:string
property_value: IAO:0000118 "OM" xsd:string
property_value: IAO:0000118 "optical microscopy" xsd:string
property_value: IAO:0000119 "CHMO" xsd:string

[Term]
id: CHMO:0000103
name: confocal microscopy
def: "Microscopy where visible light coming from the specimen is collected and guided through a pinhole before it is detected. The pinhole allows only light from the focal point to pass to the detector, reducing background interference." [ISBN:978-3-540-74597-6]
is_a: CHMO:0000102 ! light microscopy assay

[Term]
id: CHMO:0000228
name: spectroscopy
def: "The study of the interaction of a sample with radiation or particles for measurement or detection." [https://doi.org/10.1351/goldbook.S05848]
synonym: "spectrometry" EXACT []
is_a: OBI:0000070 ! assay
relationship: OBI:0000299 CHMO:0000800 ! has_specified_output spectrum

[Term]
id: CHMO:0000581
name: microspectroscopy
def: "Any type of chemical imaging spectroscopy where an optical microscope is used to image the sample and locate a small area for spectral analysis." [https://orcid.org/0000-0002-0640-0422]
synonym: "microspectrometry" EXACT []
is_a: CHMO:0000049 ! chemical imaging
is_a: CHMO:0000102 ! light microscopy assay
is_a: CHMO:0000228 ! spectroscopy
intersection_of: CHMO:0000102 {comment="Equivalence asserted manually in VIBSO based on the textual definition of this class.", isDefinedBy="http://purl.obolibrary.org/obo/vibso.owl"} ! light microscopy assay
intersection_of: CHMO:0000228 {comment="Equivalence asserted manually in VIBSO based on the textual definition of this class.", isDefinedBy="http://purl.obolibrary.org/obo/vibso.owl"} ! spectroscopy

[Term]
id: CHMO:0000628
name: vibrational spectroscopy
def: "Spectroscopy which probes the vibrational degrees of freedom of a molecule." [https://orcid.org/0000-0002-0640-0422]
synonym: "vibrational spectroscopic analysis" EXACT []
is_a: CHMO:0000228 ! spectroscopy

[Term]
id: CHMO:0000629
name: inelastic electron tunnelling spectroscopy
def: "Spectroscopy where a metal-molecule-metal sandwich is formed and electrons tunnel from metal to metal through the molecules. Any additional molecules adsorbed onto the inner layer of the sandwhich can affect the tunneling via the excitation of vibrational states." [https://orcid.org/0000-0002-0640-0422]
synonym: "IETS" EXACT []
synonym: "inelastic electron tunnelling spectrometry" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy

[Term]
id: CHMO:0000630
name: infrared absorption spectroscopy
alt_id: FIX:0000015
alt_id: FIX:0000658
def: "Spectroscopy where the sample absorbs radiation from the infrared region (0.78 to 1000 micrometres)." [FIX:0000015, FIX:0000658, ISBN:978-3-540-74597-6]
synonym: "infra-red absorption spectrometry" EXACT []
synonym: "infra-red absorption spectroscopy" EXACT []
synonym: "infra-red spectrometry" EXACT []
synonym: "infra-red spectrophotometry" EXACT []
synonym: "infrared (IR) spectroscopy" EXACT []
synonym: "infrared absorption spectrometry" EXACT []
synonym: "infrared spectrometry" EXACT []
synonym: "infrared spectrophotometry" EXACT []
synonym: "infrared spectroscopy" EXACT []
synonym: "IR" RELATED non-mining_synonym []
synonym: "IR absorption spectrometry" EXACT []
synonym: "IR absorption spectroscopy" EXACT []
synonym: "IR spectrometry" EXACT []
synonym: "IR spectrophotometry" EXACT []
synonym: "IR spectroscopy" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy

[Term]
id: CHMO:0000631
name: infrared evanescent wave spectroscopy
def: "Spectroscopy using radiation in the infrared region (0.78–1000 μm) where an evanescent wave is generated using an optical fibre." [https://doi.org/10.1088/0022-3727/34/9/306]
synonym: "infra-red evanescent wave spectrometry" EXACT []
synonym: "infrared evanescent wave spectrometry" EXACT []
synonym: "infrared evanescent wave spectroscopy" EXACT []
synonym: "IR-EWS" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000633
name: infrared multiphoton dissociation spectroscopy
def: "Spectroscopy where the sample absorbs radiation from the infrared region (0.78–1000 μm) with sufficient energy to cause photodissociation by the absorption of two or more photons." [https://orcid.org/0000-0002-0640-0422]
synonym: "infra-red multiphoton dissociation spectrometry" EXACT []
synonym: "infrared multiphoton dissociation spectrometry" EXACT []
synonym: "infrared multiphoton dissociation spectroscopy" EXACT []
synonym: "IRMPD spectrometry" EXACT []
synonym: "IRMPD spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000634
name: resonant infrared multiphoton dissociation spectroscopy
def: "Spectroscopy where the sample absorbs resonant radiation from the infrared region (0.78–1000 μm) with sufficient energy to cause photodissociation by the absorption of two or more photons." [https://orcid.org/0000-0002-0640-0422]
synonym: "IR REMPD" EXACT []
synonym: "IR REMPD spectrometry" EXACT []
synonym: "IR REMPD spectroscopy" EXACT []
synonym: "IR-REMPD" EXACT []
synonym: "resonance-enhanced infrared multiphoton dissociation spectrometry" EXACT []
synonym: "resonance-enhanced infrared multiphoton dissociation spectroscopy" EXACT []
synonym: "resonant infra-red multiphoton dissociation spectrometry" EXACT []
synonym: "resonant infra-red multiphoton dissociation spectroscopy" EXACT []
synonym: "resonant infrared multiphoton dissociation spectrometry" EXACT []
is_a: CHMO:0000633 ! infrared multiphoton dissociation spectroscopy

[Term]
id: CHMO:0000635
name: mid-infrared spectroscopy
def: "Spectroscopy where the sample absorbs radiation in the mid infrared region (3–8 μm)." [FIX:0000642, ISBN:0-534-98144-5]
synonym: "mid infrared spectroscopy" EXACT []
synonym: "mid-infra-red spectrometry" EXACT []
synonym: "mid-infrared spectrometry" EXACT []
synonym: "mid-IR" EXACT []
synonym: "mid-IR spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000636
name: Fourier transform infrared spectroscopy
alt_id: FIX:0000110
def: "Spectroscopy where the sample absorbs a single pulse of radiation from the infrared region (0.78–1000 μm) and the spectrum obtained is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "Fourier transform infra-red absorption spectroscopy" EXACT []
synonym: "Fourier transform infra-red spectrometry" EXACT []
synonym: "Fourier transform infrared (FT-IR)" EXACT []
synonym: "Fourier transform infrared (FT-IR) spectroscopy" EXACT []
synonym: "Fourier transform infrared spectrometry" EXACT []
synonym: "Fourier transform infrared spectroscopy" EXACT []
synonym: "Fourier-transform infra-red absorption spectrometry" EXACT []
synonym: "Fourier-transform infrared (FTIR) absorption spectroscopy" EXACT []
synonym: "FT-IR" EXACT []
synonym: "FT-IR spectroscopy" EXACT []
synonym: "FTIR" EXACT []
synonym: "FTIR spectrometry" EXACT []
synonym: "FTIR spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000637
name: micro infrared spectroscopy
def: "Spectroscopy where the sample absorbs radiation from a finely focused beam (<10 μm diameter) of infrared light  (0.78–1000 μm)." [https://orcid.org/0000-0002-0640-0422]
synonym: "infrared microanalysis" EXACT []
synonym: "micro infra-red spectrometry" EXACT []
synonym: "micro-infrared spectrometry" EXACT []
synonym: "micro-infrared spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000638
name: near-infrared absorption spectroscopy
def: "Spectroscopy where the sample absorbs radiation from the near infrared region (0.8–2 μm)." [FIX:0000321, ISBN:978-3-540-74597-6]
synonym: "near infra-red absorbance spectrometry" EXACT []
synonym: "near infra-red absorbance spectroscopy" EXACT []
synonym: "near infra-red absorption spectrometry" EXACT []
synonym: "near infra-red spectrometry" EXACT []
synonym: "near infrared absorbance spectrometry" EXACT []
synonym: "near infrared absorbance spectroscopy" EXACT []
synonym: "near infrared absorption spectrometry" EXACT []
synonym: "near infrared absorption spectroscopy" EXACT []
synonym: "near infrared spectrometry" EXACT []
synonym: "near infrared spectroscopy" EXACT []
synonym: "near-infra-red absorption spectrometry" EXACT []
synonym: "NIR absorbance spectrometry" EXACT []
synonym: "NIR absorbance spectroscopy" EXACT []
synonym: "NIRS" RELATED non-mining_synonym []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000639
name: Fourier transform near infrared absorbance spectroscopy
def: "Spectroscopy where the sample absorbs a single pulse of radiation from the near infrared region (0.8–2 μm) and the spectrum obtained is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "Fourier transform near infra-red absorbance spectrometry" EXACT []
synonym: "Fourier transform near infra-red absorption spectrometry" EXACT []
synonym: "Fourier transform near infra-red spectrometry" EXACT []
synonym: "Fourier transform near infra-red spectroscopy" EXACT []
synonym: "Fourier transform near infrared absorbance spectrometry" EXACT []
synonym: "Fourier transform near infrared absorbance spectroscopy" EXACT []
synonym: "Fourier transform near infrared absorption spectrometry" EXACT []
synonym: "Fourier transform near infrared absorption spectroscopy" EXACT []
synonym: "FT NIRS" EXACT []
synonym: "FT-NIRS" EXACT []
synonym: "FTNIRS" EXACT []
is_a: CHMO:0000638 ! near-infrared absorption spectroscopy

[Term]
id: CHMO:0000640
name: non-dispersive infrared spectroscopy
def: "Spectroscopy where the difference in infrared radiation (0.78–1000 μm) bsorption of a sample cell against a reference cell is measured." [ISBN:0824753593]
synonym: "NDIR" EXACT []
synonym: "NDIR spectrometry" EXACT []
synonym: "NDIR spectroscopy" EXACT []
synonym: "non-dispersive infra-red spectrometry" EXACT []
synonym: "non-dispersive infra-red spectroscopy" EXACT []
synonym: "non-dispersive infrared spectrometry" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000641
name: surface enhanced infrared absorption spectroscopy
def: "Spectroscopy where the rough metal surface of a sample absorbs radiation in the infrared region (0.78–1000 μm)." [https://doi.org/10.1039/b805223a]
synonym: "SEIRA" EXACT []
synonym: "SEIRA spectrometry" EXACT []
synonym: "SEIRA spectroscopy" EXACT []
synonym: "surface enhanced infra-red absorption spectrometry" EXACT []
synonym: "surface enhanced infra-red absorption spectroscopy" EXACT []
synonym: "surface enhanced infrared absorption spectrometry" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000642
name: transient infrared spectroscopy
alt_id: FIX:0001068
def: "Spectroscopy where transient species such as radicals, ions or reactive intermediates are studied using pulses from an infrared laser. The infrared absorbance of the sample before and after an excitation laser pulse is measured." [ISBN:9810217498]
synonym: "infrared laser transient absorption spectroscopy" EXACT []
synonym: "infrared transient absorption spectroscopy" EXACT []
synonym: "IR laser transient absorption spectroscopy" EXACT []
synonym: "IR transient absorption spectroscopy" EXACT []
synonym: "TIRS" EXACT []
synonym: "transient infrared spectrometry" EXACT []
synonym: "transient infrared spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy

[Term]
id: CHMO:0000643
name: infrared reflectance spectroscopy
alt_id: FIX:0000652
def: "Spectroscopy where the reflection or scattering of infrared radiation (0.78–1000 μm) by a sample is detected." [https://orcid.org/0000-0002-0640-0422]
synonym: "infra-red reflectance spectrometry" EXACT []
synonym: "infrared reflectance spectrometry" EXACT []
synonym: "infrared reflectance spectroscopy" EXACT []
synonym: "infrared reflection spectroscopy" EXACT []
synonym: "IR reflectance spectrometry" EXACT []
synonym: "IR reflectance spectroscopy" EXACT []
synonym: "IR reflection spectroscopy" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy

[Term]
id: CHMO:0000644
name: diffuse reflectance infrared spectroscopy
alt_id: FIX:0000656
def: "Spectroscopy where the diffuse reflection of infrared radiation by a sample is measured." [https://orcid.org/0000-0002-0640-0422]
synonym: "diffuse reflectance IR spectroscopy" EXACT []
is_a: CHMO:0000643 ! infrared reflectance spectroscopy

[Term]
id: CHMO:0000645
name: diffuse reflectance infrared Fourier transform spectroscopy
def: "Spectroscopy where the diffuse reflection of a single pulse of infrared radiation by a sample is measured, and the spectrum obtained is subject to a Fourier transform." [FIX:0000657, https://orcid.org/0000-0002-0640-0422]
synonym: "diffuse reflectance infra-red Fourier transform spectrometry" EXACT []
synonym: "diffuse reflectance infrared Fourier transform spectrometry" EXACT []
synonym: "diffuse reflectance infrared Fourier transform spectroscopy" EXACT []
synonym: "diffuse reflectance infrared spectroscopy by Fourier transform" EXACT []
synonym: "DRIFT" EXACT []
synonym: "DRIFTS" EXACT []
is_a: CHMO:0000644 ! diffuse reflectance infrared spectroscopy

[Term]
id: CHMO:0000646
name: near-infrared reflectance spectroscopy
def: "Spectroscopy where the reflection or scattering of near infrared radiation (0.8-2 micrometres) by a sample is detected." [https://orcid.org/0000-0002-0640-0422]
synonym: "near infra-red reflectance spectrometry" EXACT []
synonym: "near infrared reflectance spectroscopy" EXACT []
synonym: "NIR reflectance spectrometry" EXACT []
synonym: "NIR reflectance spectroscopy" EXACT []
synonym: "NIRS" EXACT []
is_a: CHMO:0000643 ! infrared reflectance spectroscopy

[Term]
id: CHMO:0000647
name: reflection–absorption infrared spectroscopy
def: "Spectroscopy where the absorption and reflection of low incident angle infrared light by the surface molecules of a highly reflective or polished sample is measured." [FIX:0000659, ISBN:0-471-96523-5]
synonym: "infrared reflection absorption spectrometry" EXACT []
synonym: "infrared reflection absorption spectroscopy" EXACT []
synonym: "IRAS" EXACT []
synonym: "IRRAS" EXACT []
synonym: "RA-IR" EXACT []
synonym: "RAIRS" EXACT []
synonym: "reflection absorption (RA) IR" EXACT []
synonym: "reflection absorption infra-red spectrometry" EXACT []
synonym: "reflection absorption infrared spectrometry" EXACT []
synonym: "reflection absorption infrared spectroscopy" EXACT []
synonym: "reflection-absorption infrared spectroscopy" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy

[Term]
id: CHMO:0000648
name: attenuated total reflectance infrared spectroscopy
def: "Spectroscopy where infrared light is introduced into a prism at an angle exceeding the critical angle for internal reflection. This produces an evanescent wave at the reflecting surface (a surface which is transparent to infrared such as thallium bromide) on which the sample is supported, and the distortion of the evanescent wave by the sample is measured." [ISBN:0-471-96523-5]
synonym: "ATR spectrometry" EXACT []
synonym: "ATR spectroscopy" EXACT []
synonym: "ATR-IR" EXACT []
synonym: "ATR-IR spectrometry" EXACT []
synonym: "ATR-IR spectroscopy" EXACT []
synonym: "ATR/IR" EXACT []
synonym: "ATR/IRS" EXACT []
synonym: "attenuated total reflectance infra-red spectroscopy" EXACT []
synonym: "attenuated total reflectance spectrometry" EXACT []
synonym: "internal reflection spectrometry" EXACT []
synonym: "internal reflection spectroscopy" EXACT []
synonym: "IRS" RELATED []
synonym: "MIRS" EXACT []
synonym: "multiple internal reflection spectrometry" EXACT []
synonym: "multiple internal reflection spectroscopy" EXACT []
xref: FIX:0000653
is_a: CHMO:0000643 ! infrared reflectance spectroscopy

[Term]
id: CHMO:0000649
name: infrared emission spectroscopy
def: "Spectroscopy where the sample is heated and the infrared radiation (0.78–1000 μm) emitted during cooling is detected." [FIX:0000651, https://orcid.org/0000-0002-0640-0422]
synonym: "IES" EXACT []
synonym: "infra-red emission spectrometry" EXACT []
synonym: "infrared emission spectrometry" EXACT []
synonym: "infrared emission spectroscopy" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy

[Term]
id: CHMO:0000650
name: flame infrared emission spectroscopy
def: "Spectroscopy where the sample is heated in a flame and the infrared radiation (0.78–1000 μm) emitted during cooling is detected." [https://orcid.org/0000-0002-0640-0422]
synonym: "FIRE" EXACT []
synonym: "flame infra-red emission spectrometry" EXACT []
synonym: "flame infrared emission spectroscopy" EXACT []
is_a: CHMO:0000649 ! infrared emission spectroscopy

[Term]
id: CHMO:0000651
name: Fourier transform flame infrared emission spectroscopy
def: "Spectroscopy where the sample is heated in a flame and the infrared radiation  (0.78–1000 μm) emitted during cooling is detected. The spectrum obtained is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "Fourier transform FIRE" EXACT []
synonym: "Fourier transform flame infra-red emission spectrometry" EXACT []
synonym: "Fourier transform flame infrared emission spectroscopy" EXACT []
synonym: "FT-FIRE" EXACT []
is_a: CHMO:0000650 ! flame infrared emission spectroscopy

[Term]
id: CHMO:0000652
name: Fourier transform infrared emission spectroscopy
def: "IR emission spectroscopy where the spectrum is obtained by a single pulse of (UV) radiation, and is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "Fourier transform infra-red emission spectrometry" EXACT []
synonym: "Fourier transform infra-red emission spectroscopy" EXACT []
synonym: "Fourier transform infrared emission spectrometry" EXACT []
synonym: "Fourier transform infrared emission spectroscopy" EXACT []
synonym: "Fourier transform IRES" EXACT []
synonym: "Fourier-transform infrared spectroscopy" EXACT []
synonym: "FT-IRES" EXACT []
synonym: "FTIRES" EXACT []
is_a: CHMO:0000649 ! infrared emission spectroscopy

[Term]
id: CHMO:0000653
name: mid-infrared emission spectroscopy
def: "Spectroscopy where the sample is heated and the mid infrared radiation (0.78–1000 μm) emitted during cooling is detected." [ISBN:0-534-98144-5]
synonym: "mid-infra-red emission spectrometry" EXACT []
synonym: "mid-infrared emission spectrometry" EXACT []
synonym: "mid-infrared emission spectroscopy" EXACT []
synonym: "MIRES" EXACT []
is_a: CHMO:0000649 ! infrared emission spectroscopy

[Term]
id: CHMO:0000654
name: planar array infrared emission spectroscopy
def: "Spectroscopy where the sample is heated and the infrared radiation (0.78–1000 μm) emitted during cooling is detected with a two-dimensional focal plane array infrared camera." [https://doi.org/10.1021/ac061799l]
synonym: "PA IR" EXACT []
synonym: "PA IRES" EXACT []
synonym: "PA-IR" EXACT []
synonym: "PA-IRES" EXACT []
synonym: "planar array infra-red emission spectrometry" EXACT []
synonym: "planar array infrared emission spectrometry" EXACT []
synonym: "planar array infrared emission spectroscopy" EXACT []
synonym: "planar array IR emission spectrometry" EXACT []
synonym: "planar array IR emission spectroscopy" EXACT []
synonym: "planar array IRES" EXACT []
is_a: CHMO:0000649 ! infrared emission spectroscopy

[Term]
id: CHMO:0000655
name: single-photon infrared emission spectroscopy
def: "Spectroscopy where the sample is heated using ultraviolet excitation (single photon) and the infrared radiation (0.78–1000 μm) emitted during cooling is detected." [https://doi.org/10.1021/jp9724434]
synonym: "single photon infra-red emission spectrometry" EXACT []
synonym: "single photon infra-red emission spectroscopy" EXACT []
synonym: "single-photon infra-red emission spectrometry" EXACT []
synonym: "single-photon infrared emission spectroscopy" EXACT []
synonym: "SPIRES" EXACT []
is_a: CHMO:0000649 ! infrared emission spectroscopy

[Term]
id: CHMO:0000656
name: Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, usually from a laser in the visible, near infrared, or near ultraviolet range by a sample is detected." [FIX:0000058, https://orcid.org/0000-0002-0640-0422]
synonym: "Raman scattering spectrometry" EXACT []
synonym: "Raman scattering spectroscopy" EXACT []
synonym: "Raman spectrometry" EXACT []
is_a: CHMO:0002414 ! scattering spectroscopy

[Term]
id: CHMO:0000657
name: chiral Raman spectroscopy
def: "Spectroscopy where vibrational optical activity is measured by means of a small difference in the intensity of Raman scattering from chiral molecules of right- and left-circularly polarised incident light." [https://doi.org/10.1016/j.vibspec.2006.04.020]
synonym: "chiral Raman" EXACT []
synonym: "chiral Raman spectrometry" EXACT []
synonym: "Raman optical activity" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000658
name: coherent Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light from three lasers (known as pump, probe and Stokes/anti-Stokes) by a sample is detected. multiphoton excitation is used to produce a signal in which the emitted waves are coherent." [https://orcid.org/0000-0002-0640-0422]
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000659
name: coherent Stokes Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light by a sample is detected. An anti-Stokes frequency stimulation beam is used and a Stokes frequency beam is observed. multiphoton excitation is used to produce a signal in which the emitted waves are coherent." [https://orcid.org/0000-0002-0640-0422]
synonym: "coherent Stokes Raman scattering spectrometry" EXACT []
synonym: "coherent Stokes Raman scattering spectroscopy" EXACT []
synonym: "coherent Stokes Raman spectrometry" EXACT []
synonym: "CSRS" EXACT []
is_a: CHMO:0000658 ! coherent Raman spectroscopy

[Term]
id: CHMO:0000660
name: coherent Stokes resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light by a sample is detected. An anti-Stokes frequency stimulation beam is used and a Stokes frequency beam is observed and the difference between the pump and the Stokes beams coincides with the frequency of an electronic transition within the molecule. multiphoton excitation is used to produce a signal in which the emitted waves are coherent." [https://orcid.org/0000-0002-0640-0422]
is_a: CHMO:0000659 ! coherent Stokes Raman spectroscopy

[Term]
id: CHMO:0000661
name: coherent anti-Stokes Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light by a sample is detected. A Stokes frequency stimulation beam is used and an anti-Stokes frequency beam is observed. multiphoton excitation is used to produce a signal in which the emitted waves are coherent." [FIX:0000075, https://orcid.org/0000-0002-0640-0422]
synonym: "CARS" EXACT []
synonym: "coherent anti-Stokes Raman scattering spectrometry" EXACT []
synonym: "coherent anti-Stokes Raman scattering spectroscopy" EXACT []
synonym: "coherent anti-Stokes Raman spectrometry" EXACT []
is_a: CHMO:0000658 ! coherent Raman spectroscopy

[Term]
id: CHMO:0000662
name: coherent anti-Stokes resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light by a sample is detected. A Stokes frequency stimulation beam is used and an anti-Stokes frequency beam is observed and the difference between the pump and the anti-Stokes beams coincides with the frequency of an electronic transition within the molecule. multiphoton excitation is used to produce a signal in which the emitted waves are coherent." [https://orcid.org/0000-0002-0640-0422]
is_a: CHMO:0000661 ! coherent anti-Stokes Raman spectroscopy

[Term]
id: CHMO:0000663
name: confocal Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light is detected. An aperture is used to discriminate between Raman signal coming from the focused laser spot and Raman signal coming from the out-of-focus region of the sample." [ISBN:0824703693]
synonym: "confocal Raman spectrometry" EXACT []
synonym: "CRS" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000664
name: confocal Raman microscopy
def: "The collection of spatially resolved Raman spectra of a sample during optical microscopy. An aperture is used to discriminate between Raman signal coming from the laser spot and that coming from the out-of-focus region of the sample." [ISBN:0824703693]
synonym: "confocal micro Raman" EXACT []
synonym: "confocal Raman microanalysis" EXACT []
synonym: "confocal Raman microspectrometry" EXACT []
synonym: "confocal Raman microspectroscopy" EXACT []
is_a: CHMO:0000056 ! Raman microscopy
is_a: CHMO:0000663 ! confocal Raman spectroscopy

[Term]
id: CHMO:0000665
name: Fourier transform Raman spectroscopy
def: "Spectroscopy where the Raman scattering of light (produced by a single laser pulse) by a sample is detected and the spectrum is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "Fourier transform Raman spectrometry" EXACT []
synonym: "FT-Raman" EXACT []
xref: FIX:0000384
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000666
name: hyper Raman spectroscopy
def: "Spectroscopy where the Raman scattering of light by a (liquid) sample is detected. During scattering, photons from the incident laser (with frequency ω) are scattered by sample into photons of the second harmonic (photons with frequency 2ω)." [https://orcid.org/0000-0002-0640-0422]
synonym: "hyper Raman scattering spectrometry" EXACT []
synonym: "hyper Raman scattering spectroscopy" EXACT []
synonym: "hyper Raman spectrometry" EXACT []
synonym: "hyper-Raman scattering spectrometry" EXACT []
synonym: "hyper-Raman scattering spectroscopy" EXACT []
synonym: "hyper-Raman spectrometry" EXACT []
synonym: "hyper-Raman spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000667
name: polarised Raman spectroscopy
def: "Spectroscopy where the polarisation of light which has been subjected to Raman scattering by a sample is determined." [https://orcid.org/0000-0002-0640-0422]
synonym: "polarised Raman spectrometry" EXACT []
synonym: "polarized Raman spectrometry" EXACT []
synonym: "polarized Raman spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000668
name: resonance Raman spectroscopy
def: "Raman spectroscopy where the energy of the incoming laser is adjusted such that it or the scattered light coincides with an electronic transition in the sample." [https://orcid.org/0000-0002-0640-0422]
synonym: "resonance Raman spectrometry" EXACT []
synonym: "resonant Raman spectrometry" EXACT []
synonym: "resonant Raman spectroscopy" EXACT []
synonym: "RR spectrometry" EXACT []
synonym: "RR spectroscopy" EXACT []
synonym: "RRS" RELATED []
xref: FIX:0000060
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000669
name: Kerr-gated resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, usually from a laser in the visible, near infrared, or near ultraviolet range, by a sample is detected. The energy of the incoming laser is adjusted such that it or the scattered light coincides with an electronic transition within the sample, and the laser is combined with a Kerr gate fluorescence rejection system." [https://orcid.org/0000-0002-0640-0422]
synonym: "Kerr-gated Raman spectrometry" EXACT []
is_a: CHMO:0000668 ! resonance Raman spectroscopy

[Term]
id: CHMO:0000670
name: surface-enhanced resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a visible laser, by a sample adsorbed onto a metal (Au, Ag or Cu) surface is detected. The energy of the incoming laser is adjusted such that it or the scattered light coincides with an electronic transition within the sample." [https://orcid.org/0000-0002-0640-0422]
synonym: "SERRS" EXACT []
synonym: "surface enhanced resonance Raman scattering spectrometry" EXACT []
synonym: "surface enhanced resonance Raman scattering spectroscopy" EXACT []
synonym: "surface enhanced resonance Raman spectrometry" EXACT []
xref: FIX:0000077
is_a: CHMO:0000668 ! resonance Raman spectroscopy
is_a: CHMO:0000677 ! surface-enhanced Raman spectroscopy

[Term]
id: CHMO:0000671
name: ultraviolet resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from an ultraviolet laser, by a sample is detected. The energy of the incoming laser is adjusted such that it or the scattered light coincides with an electronic transition within the sample." [https://doi.org/10.1039/b702944f]
synonym: "ultra-violet resonance Raman spectroscopy" EXACT []
synonym: "UVRR" EXACT []
synonym: "UVRRS" EXACT []
is_a: CHMO:0000668 ! resonance Raman spectroscopy

[Term]
id: CHMO:0000672
name: deep ultra-violet resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a deep ultraviolet (<300 nm) laser, by a sample is detected. The energy of the incoming laser is adjusted such that it or the scattered light coincides with an electronic transition within the sample." [https://doi.org/10.1039/b702944f]
is_a: CHMO:0000671 ! ultraviolet resonance Raman spectroscopy

[Term]
id: CHMO:0000674
name: spatially-offset Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a laser, by a sample is detected. Scattered light is collected from regions laterally offset from the excitation laser spot." [https://orcid.org/0000-0002-0640-0422]
synonym: "SORS" EXACT []
synonym: "SORSS" EXACT []
synonym: "spatially offset Raman scattering spectrometry" EXACT []
synonym: "spatially offset Raman scattering spectroscopy" EXACT []
synonym: "spatially offset Raman spectrometry" EXACT []
synonym: "spatially offset Raman spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000675
name: stimulated Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from two lasers ('pump' and 'probe') by a sample is detected." [ISBN:0-471-96523-5]
synonym: "SRS" EXACT []
synonym: "stimulated Raman scattering spectroscopy" EXACT []
synonym: "stimulated Raman spectrometry" EXACT []
synonym: "stimulated scattering spectrometry" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000676
name: femosecond stimulated Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a femtosecond laser pulse, by a sample is detected. The laser pulse is generated by the mixing of two lasers ('pump' and 'probe')." [https://doi.org/10.1088/1742-6596/28/1/007]
synonym: "emtosecond broadband stimulated Raman scattering spectrometry" EXACT []
synonym: "femosecond stimulated Raman scattering spectrometry" EXACT []
synonym: "femosecond stimulated Raman scattering spectroscopy" EXACT []
synonym: "femosecond stimulated Raman spectrometry" EXACT []
synonym: "femtosecond broadband stimulated Raman scattering spectroscopy" EXACT []
synonym: "femtosecond broadband stimulated Raman spectrometry" EXACT []
synonym: "femtosecond broadband stimulated Raman spectroscopy" EXACT []
synonym: "FSRS" EXACT []
synonym: "FSRSS" EXACT []
is_a: CHMO:0000675 ! stimulated Raman spectroscopy

[Term]
id: CHMO:0000677
name: surface-enhanced Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a visible laser, by a sample adsorbed onto a metal (Au, Ag or Cu) surface is detected." [FIX:0000076, https://orcid.org/0000-0002-0640-0422]
synonym: "SERS" EXACT []
synonym: "SERS spectroscopy" EXACT []
synonym: "surface enhanced Raman scattering" EXACT []
synonym: "surface enhanced Raman spectrometry" EXACT []
synonym: "surface enhanced Raman spectroscopy" EXACT []
synonym: "surface-enhanced Raman scattering" EXACT []
synonym: "surface-enhanced Raman scattering (SERS) spectroscopy" EXACT []
synonym: "surface-enhanced Raman spectrometry" EXACT []
synonym: "surface-enhanced Raman spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000678
name: tip-enhanced Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a visible laser (500–650 nm), by metal surfaces, where scattering is enhanced by the optical near-field of a metal-coated scanning probe microscopy tip, is detected." [https://doi.org/10.1002/anie.200460656, https://doi.org/10.1039/b9nr00156e]
synonym: "TERS" EXACT []
synonym: "tip-enhanced Raman scattering spectrometry" EXACT []
synonym: "tip-enhanced Raman scattering spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000679
name: ultra-high vacuum tip-enhanced Raman spectroscopy
def: "Spectroscopy where the Raman scattering of visible laser light, by metal surfaces, where scattering is enhanced by the optical near field of a scanning tunnelling tip, under ultra-high vacuum is detected." [https://orcid.org/0000-0002-0640-0422]
synonym: "UHV-TERS" EXACT []
is_a: CHMO:0000678 ! tip-enhanced Raman spectroscopy

[Term]
id: CHMO:0000680
name: ultraviolet Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from an ultraviolet laser, by a sample is detected." [https://doi.org/10.1021/ja044708f]
synonym: "ultra-violet Raman spectrometry" EXACT []
synonym: "ultra-violet Raman spectroscopy" EXACT []
synonym: "ultraviolet Raman spectrometry" EXACT []
synonym: "ultraviolet Raman spectroscopy" EXACT []
synonym: "UVR" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000763
name: attenuated total reflectance Fourier transform infrared spectroscopy
def: "Spectroscopy where infrared light is introduced into a prism at an angle exceeding the critical angle for internal reflection. This produces an evanescent wave at the reflecting surface (a surface which is transparent to infrared such as thallium bromide) on which the sample is supported. The distortion of the evanescent wave by the sample is measured producing a spectrum which is then subject to a Fourier transform." [FIX:0000644, ISBN:0-471-96523-5]
synonym: "ATR FT-IR spectroscopy" EXACT []
synonym: "ATR FTIR spectroscopy" EXACT []
synonym: "ATR-FTIR" EXACT []
synonym: "ATR-FTIR spectroscopy" EXACT []
synonym: "attenuated total reflectance Fourier transform infra-red spectroscopy" EXACT []
synonym: "attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy" EXACT []
synonym: "Fourier transform attenuated total reflectance infra-red" EXACT []
synonym: "Fourier transform attenuated total reflectance infra-red spectroscopy" EXACT []
synonym: "Fourier transform attenuated total reflectance infrared" EXACT []
synonym: "Fourier transform attenuated total reflectance infrared spectroscopy" EXACT []
synonym: "Fourier transform infrared attenuated total reflectance (FTIR-ATR) spectroscopy" EXACT []
synonym: "Fourier transform infrared attenuated total reflectance spectroscopy" EXACT []
synonym: "Fourier transform infrared attenuated total reflection (FTIR-ATR) spectroscopy" EXACT []
synonym: "FTIR-ATR" EXACT []
is_a: CHMO:0000648 ! attenuated total reflectance infrared spectroscopy

[Term]
id: CHMO:0000770
name: single molecule surface-enhanced Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a visible laser, by a single molecule sample adsorbed onto a metal (Au, Ag or Cu) surface is detected." [https://doi.org/10.1021/cr980133r]
synonym: "single molecule surface enhanced Raman scattering" EXACT []
synonym: "single molecule surface enhanced Raman scattering spectroscopy" EXACT []
synonym: "single molecule surface-enhanced Raman scattering" EXACT []
synonym: "single molecule surface-enhanced Raman scattering spectroscopy" EXACT []
synonym: "single molecule surface-enhanced Raman spectroscopy" EXACT []
synonym: "SM SERS" EXACT []
synonym: "SM-SERRS" EXACT []
synonym: "SM-SERS" EXACT []
synonym: "SM-SERS spectroscopy" EXACT []
synonym: "SMSERS" EXACT []
is_a: CHMO:0000677 ! surface-enhanced Raman spectroscopy

[Term]
id: CHMO:0000793
name: assay output
def: "An information content entity that is output by an assay." [https://orcid.org/0000-0001-5985-7429, https://orcid.org/0000-0002-0640-0422]
synonym: "experimental data" EXACT []
is_a: IAO:0000027 ! data item
intersection_of: IAO:0000027 ! data item
intersection_of: OBI:0000312 OBI:0000070 ! is_specified_output_of assay
relationship: OBI:0000312 OBI:0000070 ! is_specified_output_of assay

[Term]
id: CHMO:0000800
name: spectrum
def: "A plot of a measured quantity against some experimental parameter." [https://orcid.org/0000-0001-5985-7429]
synonym: "spectra" EXACT []
synonym: "spectrum plot" EXACT []
is_a: CHMO:0000793 ! assay output
relationship: OBI:0000312 CHMO:0000228 ! is_specified_output_of spectroscopy

[Term]
id: CHMO:0000823
name: Raman spectrum
def: "A plot of intensity vs. Raman shift (cm-1) obtained by measuring the Raman scattering of monochromatic light from a sample." [https://doi.org/10.1021/jp001661l]
synonym: "Raman spectra" EXACT []
is_a: CHMO:0000800 ! spectrum

[Term]
id: CHMO:0000859
name: thermogravimetry-Fourier transform infrared spectroscopy
def: "The FTIR analysis of volatile compounds released during the measurement of the mass of a sample as a function of temperature." [https://orcid.org/0000-0002-0640-0422]
synonym: "TG-FT-IR" EXACT []
synonym: "TG-FTIR" EXACT []
synonym: "TG/FTIR" EXACT []
synonym: "TGA-FT-IR" EXACT []
synonym: "TGA-FTIR" EXACT []
synonym: "thermogravimetry coupled to Fourier transform infrared spectroscopy" EXACT []
synonym: "thermogravimetry-FTIR" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy

[Term]
id: CHMO:0000870
name: near-infrared Raman spectroscopy
def: "Spectroscopy where the Raman scattering of near-infrared radiation (radiation in the range 0.8–2 μm) is detected." [https://orcid.org/0000-0002-0640-0422]
synonym: "near-infrared Raman" EXACT []
synonym: "NIR Raman" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy

[Term]
id: CHMO:0000875
name: electrochemical surface-enhanced Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a visible laser, at a metal (Au, Ag or Cu) electrochemcial interface is detected." [https://doi.org/jp809363m]
synonym: "EC-SERS" EXACT []
synonym: "electrochemical SERS" EXACT []
synonym: "electrochemical surface enhanced Raman scattering" EXACT []
synonym: "electrochemical surface-enhanced Raman scattering" EXACT []
synonym: "electrochemical surface-enhanced Raman spectroscopy" EXACT []
is_a: CHMO:0000677 ! surface-enhanced Raman spectroscopy

[Term]
id: CHMO:0000885
name: surface-enhanced chiral Raman spectroscopy
def: "Spectroscopy where vibrational optical activity from a sample absorbed onto a metal (Au, Ag or Cu) surface is measured by means of a small difference in the intensity of Raman scattering from chiral molecules of right- and left-circularly polarised incident light." [https://orcid.org/0000-0002-0640-0422]
synonym: "SEROA" EXACT []
synonym: "surface enhanced chiral Raman spectroscopy" EXACT []
synonym: "surface enhanced Raman optical activity" EXACT []
synonym: "surface-enhanced Raman optical activity" EXACT []
is_a: CHMO:0000657 ! chiral Raman spectroscopy

[Term]
id: CHMO:0000953
name: microscope
def: "A piece of apparatus which is used to generate an image of the surface of a specimen, whether by focusing reflected light onto where it can be collected or by scanning a given area of the surface." [https://orcid.org/0000-0001-5985-7429]
is_a: OBI:0000968 ! device

[Term]
id: CHMO:0001078
name: polarization modulation infrared reflection–adsorption spectroscopy
def: "Spectroscopy where the differential absorption and reflection of low incident angle p- and s-polarized infrared light by the surface molecules of a highly reflective or polished sample is measured. The ultra-thin layers on metal surfaces interact with the p-polarized component of light, but not with the s-polarized component." [https://orcid.org/0000-0002-0640-0422]
synonym: "PM-IRRAS" EXACT []
synonym: "polarization modulation infrared reflection adsorption spectroscopy" EXACT []
synonym: "polarization modulation-infrared reflection-adsorption spectroscopy" EXACT []
is_a: CHMO:0000647 ! reflection–absorption infrared spectroscopy

[Term]
id: CHMO:0001157
name: single pulse–pulsed laser polymerization–near-infrared technique
def: "A technique for measuring the time-resolved concentration of monomers during polymerisation reactions. The polymerisation is initiated by a single pulse of laser radiation and the monomer concentration is monitored by measuring absorbance in the near-infrared (0.8–2 μm) region." [ISBN:386727682X]
synonym: "single pulse-pulsed laser polymerization-near-infrared" EXACT []
synonym: "SP-PLP-NIR" EXACT []
is_a: CHMO:0000638 ! near-infrared absorption spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-03-13T11:42:53Z

[Term]
id: CHMO:0001234
name: spectrometer
def: "A piece of apparatus used to measure a spectrum." [https://orcid.org/0000-0002-0640-0422]
synonym: "spectrograph" EXACT []
synonym: "spectroscope" EXACT []
is_a: CHMO:0002793 ! sensor
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-03-25T01:54:09Z

[Term]
id: CHMO:0001235
name: Raman spectrometer
def: "A piece of apparatus that consists of a laser, a beam splitter, an interferometer and a detector and is used to measure Raman spectra." [https://orcid.org/0000-0002-0640-0422]
is_a: CHMO:0001234 ! spectrometer
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-03-25T01:55:39Z

[Term]
id: CHMO:0001262
name: gas chromatography-infrared spectroscopy
def: "Any method where a sample mixture is first separated by column chromatography where the mobile phase is a gas, then the absorption of radiation from the infrared region by the sample is measured." [https://orcid.org/0000-0002-0640-0422]
synonym: "gas chromatography infrared spectrometry" EXACT []
synonym: "gas chromatography infrared spectroscopy" EXACT []
synonym: "gas chromatography-infrared spectrometry" EXACT []
synonym: "GC IR" EXACT []
synonym: "GC-IR" EXACT []
synonym: "GC/IR" EXACT []
synonym: "GCIR" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-04-06T11:47:54Z

[Term]
id: CHMO:0001263
name: pyrolysis gas chromatography-infrared spectroscopy
def: "Any method where a sample mixture is first chemically degraded by heating then separated by column chromatography where the mobile phase is a gas, then the absorption of radiation from the infrared region by the sample is measured." [https://orcid.org/0000-0002-0640-0422]
synonym: "Py-GC-IR" EXACT []
synonym: "py-GC-IR" EXACT []
synonym: "pyrolysis gas chromatography infrared spectrometry" EXACT []
synonym: "pyrolysis gas chromatography infrared spectroscopy" EXACT []
synonym: "pyrolysis-gas chromatography-infrared spectrometry" EXACT []
synonym: "pyrolysis-gas chromatography-infrared spectroscopy" EXACT []
is_a: CHMO:0001262 ! gas chromatography-infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-04-06T11:52:44Z

[Term]
id: CHMO:0001264
name: pyrolysis infrared spectroscopy
def: "Spectroscopy where the sample is first chemically degraded by heating then its absorption of radiation from the infrared region (0.78–1000 μm) is measured." [OrangeBook:5.3]
synonym: "Py-IR" EXACT []
synonym: "py-IR" EXACT []
synonym: "Py/IR" EXACT []
synonym: "pyrolysis IR" EXACT []
synonym: "pyrolysis-IR" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-04-06T11:56:10Z

[Term]
id: CHMO:0001288
name: sum-frequency generation spectroscopy
def: "A method for generating surface-specific vibrational spectra by mixing two light beams at a surface and detecting the output beam, which has frequency equal to the sum of the two input frequencies." [https://doi.org/10.1021/ja9831453]
synonym: "SFG" EXACT []
synonym: "SFG spectroscopy" EXACT []
synonym: "SFG vibrational spectroscopy" EXACT []
synonym: "sum frequency generation (SFG) spectroscopy" EXACT []
synonym: "sum frequency generation (SFG) vibrational spectroscopy" EXACT []
synonym: "sum frequency generation spectroscopy" EXACT []
synonym: "vibrational sum-frequency generation (VSFG) spectroscopy" EXACT []
synonym: "vibrational sum-frequency generation spectroscopy" EXACT []
synonym: "VSFG spectroscopy" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-07T03:31:21Z

[Term]
id: CHMO:0001766
name: transmission Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, usually from a laser, by a sample is detected. The light is collected from the non-illuminated side of the sample." [https://orcid.org/0000-0002-0640-0422]
synonym: "transmission Raman" EXACT []
synonym: "transmission Raman scattering spectroscopy" EXACT []
synonym: "transmission Raman spectrometry" EXACT []
synonym: "TRS" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-20T10:12:23Z

[Term]
id: CHMO:0001767
name: optical tweezers Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, usually from a laser, by a sample (e.g. a biological cell) constrained using optical tweezers is detected." [https://doi.org/10.1039/b815253e]
synonym: "OTRS" EXACT []
synonym: "Raman tweezers" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-20T10:18:22Z

[Term]
id: CHMO:0001794
name: supercritical fluid extraction-Fourier transform infrared spectroscopy
def: "Fourier transform infrared spectroscopy where the sample is initially transferred from a matrix to a liquid phase using a supercritical fluid." [https://orcid.org/0000-0002-0640-0422]
synonym: "SFE-FTIR" EXACT []
synonym: "supercritical fluid extraction-Fourier transform infrared absorption spectroscopy" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-20T02:49:54Z

[Term]
id: CHMO:0001798
name: reflection–absorption Fourier transform infrared spectroscopy
def: "Spectroscopy where the absorption and reflection of low-incident-angle infrared light by the surface molecules of a highly reflective or polished sample is measured. The  sample absorbs a single pulse of radiation and the spectrum obtained is subject to a Fourier transform." [https://doi.org/10.1039/b821475a, ISBN:0-471-96523-5]
synonym: "Fourier transform infrared reflection absorption spectrometry" EXACT []
synonym: "Fourier transform infrared reflection absorption spectroscopy" EXACT []
synonym: "FT-IRAS" EXACT []
synonym: "FT-IRRAS" EXACT []
synonym: "RA FT-IR" EXACT []
synonym: "RA FTIR" EXACT []
synonym: "RA-FTIR" EXACT []
synonym: "reflection absorption (RA) FT-IR" EXACT []
synonym: "reflection absorption Fourier transform infra-red spectrometry" EXACT []
synonym: "reflection absorption Fourier transform infrared spectrometry" EXACT []
synonym: "reflection absorption Fourier transform infrared spectroscopy" EXACT []
synonym: "reflection-absorption Fourier transform infrared spectroscopy" EXACT []
is_a: CHMO:0000647 ! reflection–absorption infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-21T10:50:58Z

[Term]
id: CHMO:0001814
name: Raman microscope
alt_id: CHMO:0001236
def: "A piece of apparatus, consisting of a laser beam (<10 μm diameter), a monochromator and a detector coupled to an optical microscope, which is used to measure Raman spectra." [https://orcid.org/0000-0002-0640-0422]
synonym: "Raman microspectrometer" EXACT []
is_a: CHMO:0000953 ! microscope
is_a: CHMO:0001235 ! Raman spectrometer
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-26T01:03:35Z

[Term]
id: CHMO:0001818
name: vibrational microscopy
def: "A type of chemical imaging spectroscopy where an optical microscope is used to image the sample and locate a small area for spectral analysis that probes the vibrational degrees of freedom of a molecule." [FIX:0000695, https://orcid.org/0000-0002-0640-0422]
synonym: "vibrational microspectroscopy" EXACT []
synonym: "vibrational spectroscopic imaging" EXACT []
is_a: CHMO:0000581 ! microspectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-28T10:08:22Z

[Term]
id: CHMO:0001821
name: synchrotron Fourier transform infrared spectroscopy
def: "Spectroscopy where the sample absorbs a single pulse of radiation from the infrared region (0.78–1000 μm), produced in a synchrotron, and the spectrum obtained is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "S-FTIR" EXACT []
synonym: "S-FTIR spectrometry" EXACT []
synonym: "S-FTIR spectroscopy" EXACT []
synonym: "SFT-IR" EXACT []
synonym: "SFTIR" EXACT []
synonym: "synchrotron Fourier transform infra-red absorption spectroscopy" EXACT []
synonym: "synchrotron Fourier transform infra-red spectrometry" EXACT []
synonym: "synchrotron Fourier transform infrared (FT-IR) spectroscopy" EXACT []
synonym: "synchrotron Fourier transform infrared (S-FTIR)" EXACT []
synonym: "synchrotron Fourier transform infrared spectrometry" EXACT []
synonym: "synchrotron Fourier transform infrared spectroscopy" EXACT []
synonym: "synchrotron-based FTIR" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-05-28T10:47:32Z

[Term]
id: CHMO:0001907
name: rapid-scan infrared absorption spectroscopy
def: "Spectroscopy where the sample absorbs radiation from the infrared region (0.78–1000 μm). Spectra are collected at a rate of approx. 0.05 s per spectrum." [ISBN:1574445391]
synonym: "rapid scan infrared absorption spectroscopy" EXACT []
synonym: "rapid scan infrared spectroscopy" EXACT []
synonym: "rapid scan IR" EXACT []
synonym: "rapid scan IR spectroscopy" EXACT []
synonym: "rapid-scan infrared spectroscopy" EXACT []
synonym: "rapid-scan IR" EXACT []
synonym: "rapid-scan IR spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-03T10:09:14Z

[Term]
id: CHMO:0001908
name: ultra-rapid-scan infrared absorption spectroscopy
def: "Spectroscopy where the sample absorbs radiation from the infrared region  (0.78–1000 μm). Spectra are collected at a rate of approx. 0.001 s per spectrum." [ISBN:1574445391]
synonym: "ultra rapid scan infrared absorption spectroscopy" EXACT []
synonym: "ultra rapid scan infrared spectroscopy" EXACT []
synonym: "ultra rapid scan IR" EXACT []
synonym: "ultra rapid scan IR spectroscopy" EXACT []
synonym: "ultra-rapid-scan infrared spectroscopy" EXACT []
synonym: "ultra-rapid-scan IR" EXACT []
synonym: "ultra-rapid-scan IR spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-03T10:12:17Z

[Term]
id: CHMO:0001939
name: stimulated Raman gain spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light from two lasers ('pump' and 'probe') by a sample is detected. In stimulated Raman gain spectroscopy the probe laser has a lower frequency than the pump laser." [ISBN:0824705572]
synonym: "Raman gain spectroscopy" EXACT []
synonym: "SRGS" EXACT []
is_a: CHMO:0000675 ! stimulated Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-10T09:51:36Z

[Term]
id: CHMO:0001940
name: stimulated Raman loss spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light from two lasers ('pump' and 'probe') by a sample is detected. In stimulated Raman gain spectroscopy the pump laser has a lower frequency than the probe laser." [ISBN:0824705572]
synonym: "inverse Raman gain spectroscopy" EXACT []
synonym: "inverse Raman spectroscopy" EXACT []
synonym: "IRGS" EXACT []
synonym: "IRS" EXACT []
synonym: "Raman loss spectroscopy" EXACT []
synonym: "SRLS" EXACT []
is_a: CHMO:0000675 ! stimulated Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-10T09:55:17Z

[Term]
id: CHMO:0001941
name: photoacoustic Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light by a sample is detected. Two lasers ('pump and 'probe') are mixed and focused on the sample cell. When the frequency difference between the lasers corresponds to a Raman transition, an acoustic signal (a sound wave produced by an increase in pressure) is generated and detected by a sensitive microphone." [ISBN:0824705572]
synonym: "PARS" EXACT []
is_a: CHMO:0000675 ! stimulated Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-10T10:02:35Z

[Term]
id: CHMO:0001942
name: ionisation-detected stimulated Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from two lasers ('pump' and 'probe') by a sample is detected. The molecules in the sample are ionised using an ultraviolet laser in order to improve the signal-to-noise ratio of the spectrum." [ISBN:0824705572]
synonym: "IDSRS" EXACT []
synonym: "ionization-detected stimulated Raman spectroscopy" EXACT []
is_a: CHMO:0000675 ! stimulated Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-10T10:14:20Z

[Term]
id: CHMO:0001943
name: higher-order Raman spectral excitation spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a two-colour laser, by a sample is detected." [https://doi.org/10.1007/BF00750953]
synonym: "higher order Raman spectral excitation studies" EXACT []
synonym: "higher-order Raman spectral excitation spectroscopy" EXACT []
synonym: "higher-order Raman spectral excitation studies" EXACT []
synonym: "HORSES" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-10T10:23:02Z

[Term]
id: CHMO:0001986
name: non-resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, usually from a laser in the visible, near infrared, or near ultraviolet range by a sample is detected. The energy of the incoming laser is adjusted such that it or the scattered light does not coincide with an electronic transition in the sample." [FIX:0000026, https://orcid.org/0000-0002-0640-0422]
synonym: "non resonance Raman spectroscopy" EXACT []
synonym: "non resonant Raman spectroscopy" EXACT []
synonym: "non-resonance Raman" EXACT []
synonym: "non-resonant Raman" EXACT []
synonym: "non-resonant Raman spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-06-17T03:24:06Z

[Term]
id: CHMO:0002165
name: drop coating deposition Raman spectroscopy
def: "A type of Raman spectroscopy where the spectral signal is enhanced by pre-concentration of the sample. Drops of the sample in solution are deposited onto a surface and dry in a 'coffee-ring' pattern. Spectra are then obtained from this ring of excess of material, after evaporation has completed." [https://doi.org/10.1039/b701541k]
synonym: "DCD Raman spectroscopy" EXACT []
synonym: "DCDR" EXACT []
synonym: "DCDR spectroscopy" EXACT []
synonym: "drop coating deposition Raman (DCDR) spectroscopy" EXACT []
synonym: "drop-coating deposition Raman spectroscopy" EXACT []
synonym: "drop-coating-deposition Raman spectroscopy" EXACT []
is_a: CHMO:0000656 ! Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-07-14T10:12:49Z

[Term]
id: CHMO:0002286
name: polarised Fourier transform infrared spectroscopy
def: "Spectroscopy where the sample absorbs a single pulse of polarised radiation from the infrared region (0.78–1000 μm) and the spectrum obtained is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "polarised Fourier transform infra-red absorption spectroscopy" EXACT []
synonym: "polarised Fourier transform infra-red spectrometry" EXACT []
synonym: "polarised Fourier transform infrared (FT-IR) spectroscopy" EXACT []
synonym: "polarised Fourier transform infrared spectrometry" EXACT []
synonym: "polarised Fourier transform infrared spectroscopy" EXACT []
synonym: "polarised FTIR" EXACT []
synonym: "polarized Fourier transform infra-red absorption spectroscopy" EXACT []
synonym: "polarized Fourier transform infra-red spectrometry" EXACT []
synonym: "polarized Fourier transform infrared (FT-IR) spectroscopy" EXACT []
synonym: "polarized Fourier transform infrared spectrometry" EXACT []
synonym: "polarized Fourier transform infrared spectroscopy" EXACT []
synonym: "polarized FTIR" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-08-24T12:48:20Z

[Term]
id: CHMO:0002287
name: pyrolysis Fourier transform infrared spectroscopy
def: "Spectroscopy where the sample is first chemically degraded by heating then its absorption of radiation from the infrared region (0.78–1000 μm) is measured and the spectrum obtained is subject to a Fourier transform." [https://doi.org/10.1021/jp972162w]
synonym: "P-FTIR" EXACT []
synonym: "P/FTIR" EXACT []
synonym: "PFTIR" EXACT []
synonym: "Py-FTIR" EXACT []
synonym: "py-FTIR" EXACT []
synonym: "Py/FTIR" EXACT []
synonym: "pyrolysis FTIR" EXACT []
synonym: "pyrolysis-FTIR" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy
is_a: CHMO:0001264 ! pyrolysis infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-08-24T12:53:20Z

[Term]
id: CHMO:0002288
name: time-resolved polarised Fourier transform infrared spectroscopy
def: "Spectroscopy where the sample absorbs a single pulse of polarised radiation from the infrared region (0.78–1000 μm) and the spectrum obtained, recorded as a function of time, is subject to a Fourier transform." [https://orcid.org/0000-0002-0640-0422]
synonym: "time-resolved polarised Fourier transform infra-red absorption spectroscopy" EXACT []
synonym: "time-resolved polarised Fourier transform infra-red spectrometry" EXACT []
synonym: "time-resolved polarised Fourier transform infrared (FT-IR) spectroscopy" EXACT []
synonym: "time-resolved polarised Fourier transform infrared spectrometry" EXACT []
synonym: "time-resolved polarised Fourier transform infrared spectroscopy" EXACT []
synonym: "time-resolved polarised FTIR" EXACT []
synonym: "time-resolved polarized Fourier transform infra-red absorption spectroscopy" EXACT []
synonym: "time-resolved polarized Fourier transform infra-red spectrometry" EXACT []
synonym: "time-resolved polarized Fourier transform infrared (FT-IR) spectroscopy" EXACT []
synonym: "time-resolved polarized Fourier transform infrared spectrometry" EXACT []
synonym: "time-resolved polarized Fourier transform infrared spectroscopy" EXACT []
synonym: "time-resolved polarized FTIR" EXACT []
is_a: CHMO:0002286 ! polarised Fourier transform infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-08-24T12:55:24Z

[Term]
id: CHMO:0002289
name: fast Fourier transform infrared spectroscopy
def: "Spectroscopy where the sample absorbs a single pulse of radiation from the infrared region (0.78–1000 μm) and the spectrum obtained is subject to a fast Fourier transform." [FIX:0000647, https://doi.org/10.1021/ie960134e]
synonym: "FFT-FTIR" EXACT []
synonym: "FFT/FTIR" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-08-24T01:00:06Z

[Term]
id: CHMO:0002290
name: infrared transmission spectroscopy
def: "Spectroscopy where the transmission of infrared radiation (0.78–1000 μm) through a sample is detected." [FIX:0000661]
synonym: "infrared transmittance spectroscopy" EXACT []
synonym: "IR transmission spectroscopy" EXACT []
synonym: "IR transmittance spectroscopy" EXACT []
synonym: "transmission IR" EXACT []
is_a: CHMO:0000628 ! vibrational spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-08-24T01:02:36Z

[Term]
id: CHMO:0002291
name: dispersive infrared spectroscopy
def: "Spectroscopy where the sample absorbs radiation from the infrared region (0.78–1000 μm). The infrared beam is passed through a diffraction grating which separates (or disperses) the wavelength of the light and directs each wavelength individually through a slit to a detector." [FIX:0000649, http://www.thermo.com/eThermo/CMA/PDFs/Product/productPDF_21615.pdf]
is_a: CHMO:0000630 ! infrared absorption spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-08-24T01:12:29Z

[Term]
id: CHMO:0002373
name: surface-enhanced non-resonance Raman spectroscopy
def: "Spectroscopy where the Raman scattering of monochromatic light, from a visible laser, by a sample adsorbed onto a metal (Au, Ag or Cu) surface is detected. The energy of the incoming laser is adjusted such that it or the scattered light does not coincide with an electronic transition within the sample." [https://orcid.org/0000-0002-0640-0422]
xref: FIX:0000078
is_a: CHMO:0000668 ! resonance Raman spectroscopy
is_a: CHMO:0000677 ! surface-enhanced Raman spectroscopy
is_a: CHMO:0001986 ! non-resonance Raman spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-09-15T05:14:57Z

[Term]
id: CHMO:0002414
name: scattering spectroscopy
def: "Any method that measures the amount of light that a substance scatters at certain wavelengths, incident angles, and polarization angles." [FIX:0000057]
is_a: CHMO:0000228 ! spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-09-17T04:09:34Z

[Term]
id: CHMO:0002627
name: infrared–visible sum-frequency generation spectroscopy
def: "A method for generating surface-specific vibrational spectra by mixing two light beams (visible and IR) at a surface and detecting the output beam, which has frequency equal to the sum of the two input frequencies." [https://doi.org/10.1021/ja9831453]
synonym: "infrared-visible sum-frequency generation (SFG) spectroscopy" EXACT []
synonym: "infrared-visible sum-frequency generation spectroscopy" EXACT []
is_a: CHMO:0001288 ! sum-frequency generation spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2009-12-01T09:35:28Z

[Term]
id: CHMO:0002651
name: thermogravimetry-differential thermal analysis
def: "The measurement of the temperature difference between the sample and a reference material during the measurement of the mass of the sample as a function of temperature." [https://orcid.org/0000-0002-0640-0422]
synonym: "differential thermal analysis and thermal gravimetry analysis" EXACT []
synonym: "differential thermalgravimetric analysis" EXACT []
synonym: "DTA-TG" EXACT []
synonym: "DTA-TGA" EXACT []
synonym: "DTA/TG" EXACT []
synonym: "DTA/TGA" EXACT []
synonym: "TG-DTA" EXACT []
synonym: "TGA-DTA" EXACT []
synonym: "TGDTA" EXACT []
synonym: "thermogravimetric and differential thermal analyses" EXACT []
synonym: "thermogravimetry coupled to differential thermal analysis" EXACT []
is_a: CHMO:0000636 ! Fourier transform infrared spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2010-01-04T04:19:21Z

[Term]
id: CHMO:0002675
name: electronic sum-frequency generation spectroscopy
def: "A method for generating surface-specific electronic spectra by mixing two light beams at a surface and detecting the output beam, which has frequency equal to the sum of the two input frequencies." [https://doi.org/10.1039/b908097j]
synonym: "electronic sum frequency generation spectroscopy" EXACT []
synonym: "electronic sum-frequency generation (ESFG) spectroscopy" EXACT []
synonym: "ESFG spectroscopy" EXACT []
is_a: CHMO:0001288 ! sum-frequency generation spectroscopy
created_by: https://orcid.org/0000-0001-5985-7429
creation_date: 2010-01-13T04:01:47Z

[Term]
id: CHMO:0002710
name: two-dimensional infrared spectroscopy
def: "Spectroscopy where the sample absorbs radiation from the infrared region (0.78–1000 \\μm) over two frequency axes. Cross peaks in the spectrum encode the couplings and orientation between vibrations." [FIX:0001069]
synonym: "2D IR" EXACT []
synonym: "2D-IR" EXACT []
synonym: "2DIR" EXACT []
synonym: "two dimensional infrared spectroscopy" EXACT []
synonym: "two-dimensional infrared (2D-IR) spectroscopy" EXACT []
synonym: "two-dimensional IR spectroscopy" EXACT []
is_a: CHMO:0000630 ! infrared absorption spectroscopy
created_by: Hils
creation_date: 2010-07-24T11:15:46Z

[Term]
id: CHMO:0002793
name: sensor
def: "A piece of apparatus that is used to measure a physical quantity." [https://orcid.org/0000-0001-5985-7429]
is_a: OBI:0000968 ! device

[Term]
id: CHMO:0002813
name: in situ diffuse reflectance infrared Fourier transform spectroscopy
def: "Diffuse reflectance infrared Fourier transform spectroscopy of a sample that is carried out in the environment where the sample might be used." [https://orcid.org/0000-0001-5985-7429]
comment: For example, the sample might be a catalyst, so during those catalytic processes.
synonym: "in situ DRIFT" EXACT []
synonym: "in situ DRIFTS" EXACT []
is_a: CHMO:0000645 ! diffuse reflectance infrared Fourier transform spectroscopy

[Term]
id: CHMO:0002820
name: concentration
def: "Experimental method output expressing the contribution of one constituent to the composition of a mixture." [https://orcid.org/0000-0001-5985-7429]
comment: based heavily on https://doi.org/10.1351/goldbook.C01222
is_a: CHMO:0000793 ! assay output
relationship: IAO:0000136 CHEBI:60004 ! is about mixture

[Term]
id: CHMO:0002821
name: mass concentration
def: "Experimental method output expressing a concentration in terms of the mass of a constituent divided by the volume of the mixture." [https://orcid.org/0000-0001-5985-7429]
comment: based heavily on https://doi.org/10.1351/goldbook.M03713
is_a: CHMO:0002820 ! concentration

[Term]
id: CHMO:0002822
name: amount concentration
def: "Experimental method output expressing a concentration in terms of the amount of a constituent divided by the volume of the mixture." [https://orcid.org/0000-0001-5985-7429]
comment: based heavily on https://doi.org/10.1351/goldbook.A00295
synonym: "amount-of-substance concentration" EXACT []
synonym: "molarity" EXACT []
synonym: "substance concentration" EXACT []
is_a: CHMO:0002820 ! concentration

[Term]
id: CHMO:0002823
name: volume concentration
def: "Experimental method output expressing a concentration in terms of the volume of a constituent divided by the volume of the mixture." [https://orcid.org/0000-0001-5985-7429]
comment: based heavily on https://doi.org/10.1351/goldbook.C01222
is_a: CHMO:0002820 ! concentration

[Term]
id: CHMO:0002824
name: number concentration
def: "Experimental method output expressing a concentration in terms of the number of entities of a constituent divided by the volume of the mixture." [https://orcid.org/0000-0001-5985-7429]
comment: based heavily on https://doi.org/10.1351/goldbook.N04260
is_a: CHMO:0002820 ! concentration

[Term]
id: FOODON:00004086
name: device specification
def: "A directive information entity which specifies a device and its settings for use within a plan specification." []
is_a: IAO:0000033 ! directive information entity
property_value: dcterms:date "2021-11-29T21:53:39Z" xsd:dateTime
property_value: IAO:0000114 IAO:0000428
property_value: IAO:0000117 ORCID:0000-0002-8844-9165

[Term]
id: IAO:0000003
name: measurement unit label
def: "A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure." []
is_a: IAO:0000009 ! datum label
property_value: IAO:0000111 "measurement unit label" xsd:string
property_value: IAO:0000112 "Examples of measurement unit labels are liters, inches, weight per volume." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "2009-03-16: provenance: a term measurement unit was\nproposed for OBI (OBI_0000176) , edited by Chris Stoeckert and\nCristian Cocos, and subsequently moved to IAO where the objective for\nwhich the original term was defined was satisfied with the definition\nof this, different, term." xsd:string
property_value: IAO:0000116 "2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string

[Term]
id: IAO:0000005
name: objective specification
def: "A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved." []
is_a: IAO:0000033 ! directive information entity
property_value: IAO:0000111 "objective specification" xsd:string
property_value: IAO:0000112 "In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "2009-03-16: original definition when imported from OBI read: \"objective is an non realizable information entity which can serve as that  proper part of a plan towards which the realization of the plan is directed.\"" xsd:string
property_value: IAO:0000116 "2014-03-31: In the example of usage (\"In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction\") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that." xsd:string
property_value: IAO:0000116 "Answers the question, why did you do this experiment?" xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Barry Smith" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string
property_value: IAO:0000118 "goal specification" xsd:string
property_value: IAO:0000119 "OBI Plan and Planned Process/Roles Branch" xsd:string
property_value: IAO:0000119 "OBI_0000217" xsd:string

[Term]
id: IAO:0000007
name: action specification
def: "A directive information entity that describes an action the bearer will take." []
is_a: IAO:0000033 ! directive information entity
property_value: IAO:0000112 "Pour the contents of flask 1 into flask 2" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000119 "OBI Plan and Planned Process branch" xsd:string

[Term]
id: IAO:0000009
name: datum label
def: "A label is a symbol that is part of some other datum and is used to either partially define  the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label" []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "datum label" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000116 "http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n" xsd:string
property_value: IAO:0000117 "GROUP: IAO" xsd:string
property_value: IAO:0000232 "9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum. \n" xsd:string

[Term]
id: IAO:0000015
name: information carrier
def: "A quality of an information bearer that imparts the information content" []
is_a: BFO:0000019 ! quality
intersection_of: BFO:0000019 ! quality
intersection_of: RO:0000059 IAO:0000030 ! concretizes information content entity
relationship: RO:0000059 IAO:0000030 ! concretizes information content entity
property_value: IAO:0000111 "information carrier" xsd:string
property_value: IAO:0000112 "In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'." xsd:string
property_value: IAO:0000116 "2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000119 "Smith, Ceusters, Ruttenberg, 2000 years of philosophy" xsd:string

[Term]
id: IAO:0000017
name: model number
def: "A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar  that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots." []
is_a: IAO:0000028 ! symbol
property_value: IAO:0000111 "model number" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "manufactered items may have more than one model number, sometimes by rebranding, or because companies are sold and the products issued new model numbers" xsd:string
property_value: IAO:0000117 "Person: Alan Ruttenberg" xsd:string

[Term]
id: IAO:0000027
name: data item
def: "An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements." []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "data item" xsd:string
property_value: IAO:0000112 "Data items include counts of things, analyte concentrations, and statistical summaries." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers." xsd:string
property_value: IAO:0000116 "2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum." xsd:string
property_value: IAO:0000116 "2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym." xsd:string
property_value: IAO:0000116 "2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/" xsd:string
property_value: IAO:0000116 "JAR: datum     -- well, this will be very tricky to define, but maybe some \ninformation-like stuff that might be put into a computer and that is \nmeant, by someone, to denote and/or to be interpreted by some \nprocess... I would include lists, tables, sentences... I think I might \ndefer to Barry, or to Brian Cantwell Smith\n\nJAR: A data item is an approximately justified approximately true approximate belief" xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Chris Stoeckert" xsd:string
property_value: IAO:0000117 "PERSON: Jonathan Rees" xsd:string
property_value: IAO:0000118 "data" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ogms.owl

[Term]
id: IAO:0000028
name: symbol
def: "An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity." []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "symbol" xsd:string
property_value: IAO:0000112 "a serial number such as \"12324X\"" xsd:string
property_value: IAO:0000112 "a stop sign" xsd:string
property_value: IAO:0000112 "a written proper name such as \"OBI\"" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "20091104, MC: this needs work and will most probably change" xsd:string
property_value: IAO:0000116 "2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154)." xsd:string
property_value: IAO:0000117 "PERSON: James A. Overton" xsd:string
property_value: IAO:0000117 "PERSON: Jonathan Rees" xsd:string
property_value: IAO:0000119 "based on Oxford English Dictionary" xsd:string

[Term]
id: IAO:0000030
name: information content entity
def: "A generically dependent continuant that is about some thing." []
is_a: BFO:0000031 ! generically dependent continuant
relationship: IAO:0000136 BFO:0000001 ! is about entity
property_value: IAO:0000111 "information content entity" xsd:string
property_value: IAO:0000112 "Examples of information content entites include journal articles, data, graphical layouts, and graphs." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)." xsd:string
property_value: IAO:0000116 "information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).\n\nPrevious. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity." xsd:string
property_value: IAO:0000117 "PERSON: Chris Stoeckert" xsd:string
property_value: IAO:0000119 "OBI_0000142" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ogms.owl

[Term]
id: IAO:0000032
name: scalar measurement datum
def: "A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label." []
is_a: IAO:0000109 ! measurement datum
property_value: IAO:0000112 "10 feet. 3 ml." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000116 "2009-03-16: we decided to keep datum singular in scalar measurement datum, as in\nthis case we explicitly refer to the singular form" xsd:string
property_value: IAO:0000116 "Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string

[Term]
id: IAO:0000033
name: directive information entity
def: "An information content entity whose concretizations indicate to their bearer how to realize them in a process." []
is_a: IAO:0000030 ! information content entity
relationship: IAO:0000136 BFO:0000017 ! is about realizable entity
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was  \"is the specification of a process that can be concretized and realized by an actor\" with alternative term  \"instruction\".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term." xsd:string
property_value: IAO:0000116 "2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it." xsd:string
property_value: IAO:0000116 "8/6/2009 Alan Ruttenberg: Changed label from \"information entity about a realizable\" after discussions at ICBO" xsd:string
property_value: IAO:0000116 "Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan" xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string

[Term]
id: IAO:0000038
name: graph
def: "A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way." []
is_a: IAO:0000309 ! diagram
property_value: IAO:0000111 "graph" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "PERSON: Lawrence Hunter" xsd:string
property_value: IAO:0000117 "person:Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "person:Allyson Lister" xsd:string
property_value: IAO:0000119 "group:OBI" xsd:string
property_value: IAO:0000119 "OBI_0000240" xsd:string

[Term]
id: IAO:0000064
name: algorithm
def: "A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata." []
is_a: IAO:0000104 ! plan specification
property_value: IAO:0000111 "algorithm" xsd:string
property_value: IAO:0000112 "PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000117 "PlanAndPlannedProcess Branch" xsd:string
property_value: IAO:0000119 "adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)" xsd:string
property_value: IAO:0000119 "OBI_0000270" xsd:string

[Term]
id: IAO:0000078
name: curation status specification
def: "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." []
is_a: IAO:0000102 ! data about an ontology part
property_value: IAO:0000111 "curation status specification" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" xsd:string
property_value: IAO:0000117 "PERSON:Bill Bug" xsd:string
property_value: IAO:0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>" xsd:string
property_value: IAO:0000119 "OBI_0000266" xsd:string

[Term]
id: IAO:0000101
name: image
def: "An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface." []
is_a: IAO:0000308 ! figure
property_value: IAO:0000111 "image" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "person:Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "person:Allyson" xsd:string
property_value: IAO:0000117 "person:Chris Stoeckert" xsd:string
property_value: IAO:0000119 "group:OBI" xsd:string
property_value: IAO:0000119 "OBI_0000030" xsd:string

[Term]
id: IAO:0000102
name: data about an ontology part
def: "Data about an ontology part is a data item about a part of an ontology, for example a term" []
is_a: IAO:0000027 ! data item
property_value: IAO:0000111 "data about an ontology part" xsd:string
property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string

[Term]
id: IAO:0000104
name: plan specification
def: "A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified." []
def: "A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified." []
comment: 2/3/2009 Comment from OBI review.\n\nAction specification not well enough specified.\nConditional specification not well enough specified.\nQuestion whether all plan specifications have objective specifications.\n\nRequest that IAO either clarify these or change definitions not to use them
is_a: IAO:0000033 ! directive information entity
relationship: BFO:0000051 IAO:0000005 ! has part objective specification
relationship: BFO:0000051 IAO:0000007 ! has part action specification
property_value: IAO:0000111 "plan specification" xsd:string
property_value: IAO:0000112 "PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was \" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan\". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term." xsd:string
property_value: IAO:0000116 "2014-03-31: A plan specification can have other parts, such as conditional specifications." xsd:string
property_value: IAO:0000116 "2022-01-16 Updated definition to that proposed by Clint Dowloand, IAO Issue 231." xsd:string
property_value: IAO:0000116 "Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved" xsd:string
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "Clint Dowland" xsd:string
property_value: IAO:0000119 "OBI Plan and Planned Process branch" xsd:string
property_value: IAO:0000119 "OBI_0000344" xsd:string
property_value: seeAlso "https://github.com/information-artifact-ontology/IAO/issues/231#issuecomment-1010455131" xsd:string

[Term]
id: IAO:0000109
name: measurement datum
def: "A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device." []
is_a: IAO:0000027 ! data item
relationship: OBI:0001938 OBI:0001933 ! has value specification value specification
property_value: IAO:0000111 "measurement datum" xsd:string
property_value: IAO:0000112 "Examples of measurement data are the recoding of the weight of a mouse as {40,mass,\"grams\"}, the recording of an observation of the behavior of the mouse {,process,\"agitated\"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "2/2/2009 is_specified_output of some assay?" xsd:string
property_value: IAO:0000117 "person:Chris Stoeckert" xsd:string
property_value: IAO:0000119 "group:OBI" xsd:string
property_value: IAO:0000119 "OBI_0000305" xsd:string

[Term]
id: IAO:0000140
name: setting datum
def: "A settings datum is a datum that denotes some configuration of an instrument." []
is_a: IAO:0000027 ! data item
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000116 "2/3/2009 Feedback from OBI\n\nThis should be a \"setting specification\". There is a question of whether it is information about a realizable or not.\n\nPro other specification are about realizables.\nCons sometimes specifies a quality which is not a realizable." xsd:string
property_value: IAO:0000116 "Alan grouped these in placeholder for the moment. Name by analogy to measurement datum." xsd:string

[Term]
id: IAO:0000178
name: material information bearer
def: "A material entity in which a concretization of an information content entity inheres." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000111 "material information bearer" xsd:string
property_value: IAO:0000112 "a brain" xsd:string
property_value: IAO:0000112 "a hard drive" xsd:string
property_value: IAO:0000112 "A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "GROUP: IAO" xsd:string

[Term]
id: IAO:0000184
name: scatter plot
def: "A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis." []
is_a: IAO:0000038 ! graph
property_value: IAO:0000111 "scatter plot" xsd:string
property_value: IAO:0000112 "Comparison of gene expression values in two samples can be displayed in a scatter plot" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON:Chris Stoeckert" xsd:string
property_value: IAO:0000117 "PERSON:James Malone" xsd:string
property_value: IAO:0000117 "PERSON:Melanie Courtot" xsd:string
property_value: IAO:0000118 "scattergraph" xsd:string
property_value: IAO:0000119 "WEB: http://en.wikipedia.org/wiki/Scatterplot" xsd:string

[Term]
id: IAO:0000225
name: obsolescence reason specification
def: "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." []
is_a: IAO:0000102 ! data about an ontology part
property_value: IAO:0000111 "obsolescence reason specification" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string

[Term]
id: IAO:0000300
name: textual entity
def: "A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc." []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "textual entity" xsd:string
property_value: IAO:0000112 "Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000116 "AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc." xsd:string
property_value: IAO:0000116 "MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities." xsd:string
property_value: IAO:0000117 "PERSON: Lawrence Hunter" xsd:string
property_value: IAO:0000118 "text" xsd:string

[Term]
id: IAO:0000308
name: figure
def: "An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something." []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "figure" xsd:string
property_value: IAO:0000112 "Any picture, diagram or table" xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: Lawrence Hunter" xsd:string

[Term]
id: IAO:0000309
name: diagram
def: "A figure that expresses one or more propositions" []
is_a: IAO:0000308 ! figure
property_value: IAO:0000111 "diagram" xsd:string
property_value: IAO:0000112 "A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: Lawrence Hunter" xsd:string

[Term]
id: IAO:0000310
name: document
def: "A collection of information content entities intended to be understood together as a whole" []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "document" xsd:string
property_value: IAO:0000112 "A journal article, patent application, laboratory notebook, or a book" xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: Lawrence Hunter" xsd:string

[Term]
id: IAO:0000311
name: publication
def: "A document that is the output of a publishing process." []
comment: Revisit the term in Octorber 2020. Improve the defintion.
is_a: IAO:0000310 ! document
intersection_of: IAO:0000310 ! document
intersection_of: OBI:0000312 IAO:0000444 {all_only="true"} ! is_specified_output_of publishing process
property_value: IAO:0000111 "publication" xsd:string
property_value: IAO:0000112 "journal article, newspaper story, book, etc." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: Chris Stoeckert" xsd:string
property_value: IAO:0000117 "PERSON: Jie Zheng" xsd:string
property_value: IAO:0000117 "PERSON: Lawrence Hunter" xsd:string
property_value: IAO:0000118 "published document" xsd:string
property_value: IAO:0000233 https://github.com/information-artifact-ontology/IAO/issues/232

[Term]
id: IAO:0000408
name: length measurement datum
def: "A scalar measurement datum that is the result of measurement of length quality" []
is_a: IAO:0000032 ! scalar measurement datum
relationship: IAO:0000039 UO:0000001 ! has measurement unit label length unit
relationship: IAO:0000221 PATO:0000122 ! is quality measurement of length
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string

[Term]
id: IAO:0000409
name: denotator type
def: "A denotator type indicates how a term should be interpreted from an ontological perspective." []
is_a: IAO:0000102 ! data about an ontology part
property_value: IAO:0000111 "denotator type" xsd:string
property_value: IAO:0000112 "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." xsd:string
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000119 "Barry Smith, Werner Ceusters" xsd:string

[Term]
id: IAO:0000414
name: mass measurement datum
def: "A scalar measurement datum that is the result of measurement of mass quality" []
is_a: IAO:0000032 ! scalar measurement datum
relationship: IAO:0000039 UO:0000002 ! has measurement unit label mass unit
relationship: IAO:0000221 PATO:0000125 ! is quality measurement of mass
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000116 "2009/09/28 Alan Ruttenberg. Fucoidan-use-case" xsd:string
property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string

[Term]
id: IAO:0000444
name: publishing process
def: "A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free." []
is_a: OBI:0000011 ! planned process
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "Person: Jie Zheng" xsd:string
property_value: IAO:0000119 "https://en.wikipedia.org/wiki/Publishing" xsd:string
property_value: IAO:0000233 https://github.com/information-artifact-ontology/IAO/issues/232
property_value: IAO:0000234 "VEuPathDB" xsd:string

[Term]
id: IAO:0000572
name: documenting
def: "A planned process in which a document is created or added to by including the specified input in it." []
is_a: OBI:0000011 ! planned process
relationship: OBI:0000293 IAO:0000030 ! has_specified_input information content entity
relationship: OBI:0000299 IAO:0000310 ! has_specified_output document
property_value: IAO:0000112 "Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape" xsd:string
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "wikipedia http://en.wikipedia.org/wiki/Documenting" xsd:string

[Term]
id: IAO:0000577
name: centrally registered identifier symbol
def: "A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry." []
is_a: IAO:0000028 ! symbol
relationship: BFO:0000050 IAO:0000578 ! part of centrally registered identifier
property_value: IAO:0000112 "The sentence \"The article has Pubmed ID 12345.\" contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bill Hogan" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000118 "CRID symbol" xsd:string
property_value: IAO:0000119 "Original proposal from Bjoern, discussions at IAO calls" xsd:string

[Term]
id: IAO:0000578
name: centrally registered identifier
def: "An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs." []
is_a: IAO:0020000 ! identifier
relationship: BFO:0000051 IAO:0000577 ! has part centrally registered identifier symbol
property_value: IAO:0000112 "The sentence \"The article has Pubmed ID 12345.\" contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000116 "2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records')." xsd:string
property_value: IAO:0000116 "Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation." xsd:string
property_value: IAO:0000116 "Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bill Hogan" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000118 "CRID" xsd:string
property_value: IAO:0000119 "Original proposal from Bjoern, discussions at IAO calls" xsd:string

[Term]
id: IAO:0000579
name: centrally registered identifier registry
def: "A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process." []
is_a: IAO:0020020 ! code set
property_value: IAO:0000112 "PubMed is a CRID registry. It has a code set of PubMed identifiers associated with journal articles. " xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "Justin Whorton" xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bill Hogan" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000118 "CRID registry" xsd:string
property_value: IAO:0000119 "Original proposal from Bjoern, discussions at IAO calls" xsd:string
property_value: IAO:0000233 "https://github.com/information-artifact-ontology/IAO/issues/237" xsd:string

[Term]
id: IAO:0020000
name: identifier
def: "An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity." []
comment: Sep 29, 2016: The current definition has been amended from the previous version: "A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity." to more accuratly reflect the necessary and sufficient condition on the class. (MB)
is_a: IAO:0000030 ! information content entity
intersection_of: IAO:0000030 ! information content entity
intersection_of: IAO:0000219 BFO:0000001 ! denotes entity
intersection_of: OBI:0000312 IAO:0020010 ! is_specified_output_of identifier creating process
relationship: IAO:0000219 BFO:0000001 ! denotes entity
relationship: OBI:0000312 IAO:0020010 ! is_specified_output_of identifier creating process
property_value: dce:creator "Mathias Brochhausen" xsd:string
property_value: IAO:0000111 "identifier" xsd:string
property_value: IAO:0000117 "Justin Whorton" xsd:string
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "proper name" xsd:string
property_value: IAO:0000233 "https://github.com/information-artifact-ontology/IAO/issues/237" xsd:string

[Term]
id: IAO:0020010
name: identifier creating process
def: "A planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity." []
is_a: OBI:0000011 ! planned process
intersection_of: OBI:0000011 ! planned process
intersection_of: OBI:0000299 IAO:0020000 ! has_specified_output identifier
relationship: OBI:0000299 IAO:0020000 ! has_specified_output identifier
property_value: dce:creator "Mathias Brochhausen" xsd:string
property_value: IAO:0000117 "Justin Whorton" xsd:string
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "dubbing process" xsd:string
property_value: IAO:0000118 "naming" xsd:string
property_value: IAO:0000233 "https://github.com/information-artifact-ontology/IAO/issues/237" xsd:string

[Term]
id: IAO:0020020
name: code set
def: "An information content entity that is a collection of other information content entities that has been created to identify or annotate things in a specified domain, and where the intention of its creators is that the collection has a one-to-one correspondence with those things." []
comment: Code sets might include non-entities/things (e.g. missing thumbs).
comment: Does not imply absence vs. presence of any taxonomy.
comment: Does not imply that aggregated entities denote particulars, universals, or defined classes (a.k.a. attributive collections) or even that they denote only one of these three types of entities.
comment: Each aggregated entity is often (but not necessarily) associated with a text string—variously called a “description,” “name,” “title,” or “label”—that helps humans reach the target of denotation.\n\nWhen there is no such string, it is almost always because the entities take the form of human language words. For example, a “sex” or “gender” code set could contain “MALE” and “FEMALE,” or even “M” and “F” (by convention, we understand what these mean).
comment: For each given domain, there can potentially exist multiple code sets. The multiplicity of code sets is partially due to the different specific purposes of those code sets.
comment: For National Drug Codes (NDCs) and similar code sets, there doesn’t even have to be a single, fully-concretized copy somewhere (for example, for NDCs there is no centralized database or repository where they all live as one instance of concretization of code set). The code set can be “distributively” concretized. This seems like an unusual exception, but it also likely applies to Universal Product Codes (UPCs) and their follow on Global Trade Item Numbers (GTINs).
comment: Many code sets are created for a specific purpose in addition to merely identifying or annotating core ideas of a specified domain.
comment: The information content entities do not denote each other.
is_a: IAO:0000030 ! information content entity
relationship: BFO:0000051 IAO:0020000 ! has part identifier
property_value: dce:contributor "Alan Ruttenberg" xsd:string
property_value: dce:contributor "Clint Dowland" xsd:string
property_value: dce:contributor "Matt Diller" xsd:string
property_value: dce:contributor "Sarah Bost" xsd:string
property_value: dce:contributor "William R. Hogan" xsd:string
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "Justin Whorton" xsd:string
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "code map" xsd:string
property_value: IAO:0000118 "code system" xsd:string
property_value: IAO:0000118 "codeset" xsd:string
property_value: IAO:0000118 "coding system" xsd:string
property_value: IAO:0000118 "controlled vocabulary" xsd:string
property_value: IAO:0000233 "https://github.com/information-artifact-ontology/IAO/issues/237" xsd:string

[Term]
id: IAO:8000000
name: ontology module
is_a: IAO:0000102 ! data about an ontology part
property_value: IAO:0000111 "ontology module" xsd:string
property_value: IAO:0000116 "I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it." xsd:string
property_value: IAO:0000118 "ontology file" xsd:string
property_value: IAO:0000232 "This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology." xsd:string

[Term]
id: IAO:8000001
name: base ontology module
def: "An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "base ontology module" xsd:string
property_value: seeAlso https://github.com/INCATools/ontology-starter-kit/issues/50

[Term]
id: IAO:8000002
name: editors ontology module
def: "An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "editors ontology module" xsd:string
property_value: IAO:0000118 "source ontology module" xsd:string

[Term]
id: IAO:8000003
name: main release ontology module
def: "An ontology module that is intended to be the primary release product and the one consumed by the majority of tools." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "main release ontology module" xsd:string
property_value: IAO:0000116 "TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module" xsd:string

[Term]
id: IAO:8000004
name: bridge ontology module
def: "An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "bridge ontology module" xsd:string
property_value: seeAlso https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies

[Term]
id: IAO:8000005
name: import ontology module
def: "A subset ontology module that is intended to be imported from another ontology." []
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "import ontology module" xsd:string
property_value: IAO:0000116 "TODO: add axioms that indicate this is the output of a module extraction process." xsd:string
property_value: IAO:0000118 "import file" xsd:string
property_value: seeAlso http://robot.obolibrary.org/extract

[Term]
id: IAO:8000006
name: subset ontology module
def: "An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "subset ontology module" xsd:string
property_value: IAO:0000118 "ontology slim" xsd:string
property_value: IAO:0000118 "subset ontology" xsd:string
property_value: seeAlso http://robot.obolibrary.org/filter
property_value: seeAlso http://www.geneontology.org/page/go-slim-and-subset-guide

[Term]
id: IAO:8000007
name: curation subset ontology module
def: "A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation." []
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "curation subset ontology module" xsd:string

[Term]
id: IAO:8000008
name: analysis subset ontology module
def: "An ontology module that is intended for usage in analysis or discovery applications." []
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "analysis ontology module" xsd:string

[Term]
id: IAO:8000009
name: single layer subset ontology module
def: "A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint." []
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "single layer ontology module" xsd:string
property_value: IAO:0000118 "ribbon subset" xsd:string

[Term]
id: IAO:8000010
name: exclusion subset ontology module
def: "A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes." []
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "exclusion subset ontology module" xsd:string
property_value: IAO:0000118 "antislim" xsd:string

[Term]
id: IAO:8000011
name: external import ontology module
def: "An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach." []
is_a: IAO:8000005 ! import ontology module
property_value: IAO:0000111 "external import ontology module" xsd:string
property_value: IAO:0000118 "external import" xsd:string

[Term]
id: IAO:8000012
name: species subset ontology module
def: "A subset ontology that is crafted to either include or exclude a taxonomic grouping of species." []
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "species subset ontology module" xsd:string
property_value: IAO:0000118 "taxon subset" xsd:string
property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints

[Term]
id: IAO:8000013
name: reasoned ontology module
def: "An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "reasoned ontology module" xsd:string
property_value: seeAlso http://robot.obolibrary.org/reason

[Term]
id: IAO:8000014
name: generated ontology module
def: "An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV." []
is_a: IAO:8000000 ! ontology module
property_value: IAO:0000111 "generated ontology module" xsd:string
property_value: IAO:0000116 "TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process" xsd:string

[Term]
id: IAO:8000015
name: template generated ontology module
def: "An ontology module that is automatically generated from a template specification and fillers for slots in that template." []
is_a: IAO:8000014 ! generated ontology module
property_value: IAO:0000111 "template generated ontology module" xsd:string
property_value: seeAlso http://robot.obolibrary.org/template
property_value: seeAlso https://doi.org/10.1186/s13326-017-0126-0
property_value: seeAlso https://github.com/dosumis/dead_simple_owl_design_patterns/

[Term]
id: IAO:8000016
name: taxonomic bridge ontology module
is_a: IAO:8000004 ! bridge ontology module
property_value: IAO:0000111 "taxonomic bridge ontology module" xsd:string

[Term]
id: IAO:8000017
name: ontology module subsetted by expressivity
is_a: IAO:8000006 ! subset ontology module
property_value: IAO:0000111 "ontology module subsetted by expressivity" xsd:string

[Term]
id: IAO:8000018
name: obo basic subset ontology module
def: "A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.\n\nExamples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).\n\nAn ontology is OBO Basic if and only if it has the following characteristics:\nDAG\nUnidirectional\nNo Dangling Clauses\nFully Asserted\nFully Labeled\nNo equivalence axioms\nSingly labeled edges\nNo qualifier lists\nNo disjointness axioms\nNo owl-axioms header\nNo imports" []
is_a: IAO:8000017 ! ontology module subsetted by expressivity
property_value: IAO:0000111 "obo basic subset ontology module" xsd:string
property_value: seeAlso 6.2

[Term]
id: IAO:8000019
name: ontology module subsetted by OWL profile
is_a: IAO:8000017 ! ontology module subsetted by expressivity
property_value: IAO:0000111 "ontology module subsetted by OWL profile" xsd:string

[Term]
id: IAO:8000020
name: EL++ ontology module
is_a: IAO:8000019 ! ontology module subsetted by OWL profile
property_value: IAO:0000111 "EL++ ontology module" xsd:string

[Term]
id: NCBITaxon:9606
name: Homo sapiens
name: person
is_a: OBI:0100026 ! organism
property_value: IAO:0000111 "Homo sapiens" xsd:string
property_value: IAO:0000118 "human" xsd:string
property_value: IAO:0000118 "human being" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ncbitaxon.owl

[Term]
id: OBI:0000011
name: planned process
def: "A process that realizes a plan which is the concretization of a plan specification." []
is_a: BFO:0000015 ! process
property_value: IAO:0000111 "planned process" xsd:string
property_value: IAO:0000111 "planned process" xsd:string
property_value: IAO:0000112 "Injecting mice with a vaccine in order to test its efficacy" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)" xsd:string
property_value: IAO:0000116 "We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some \nobjectives is a planned process." xsd:string
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "branch derived" xsd:string
property_value: IAO:0000232 "6/11/9: Edited at workshop. Used to include: is initiated by an agent" xsd:string
property_value: IAO:0000232 "This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl

[Term]
id: OBI:0000047
name: processed material
def: "Is a material entity that is created or changed during material processing." []
is_a: BFO:0000040 ! material entity
intersection_of: BFO:0000040 ! material entity
intersection_of: OBI:0000312 OBI:0000094 ! is_specified_output_of material processing
relationship: OBI:0000312 OBI:0000094 ! is_specified_output_of material processing
property_value: IAO:0000111 "processed material" xsd:string
property_value: IAO:0000112 "Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string

[Term]
id: OBI:0000066
name: investigation
def: "a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s)." []
is_a: OBI:0000011 ! planned process
relationship: BFO:0000051 IAO:0000572 ! has part documenting
relationship: BFO:0000051 OBI:0000338 ! has part drawing a conclusion based on data
relationship: BFO:0000051 OBI:0000471 ! has part study design execution
property_value: IAO:0000111 "investigation" xsd:string
property_value: IAO:0000112 "Lung cancer investigation using expression profiling, a stem cell transplant investigation, biobanking is not an investigation, though it may be part of an investigation" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "OBI branch derived" xsd:string
property_value: IAO:0000232 "Could add specific objective specification" xsd:string
property_value: IAO:0000232 "Following OBI call November 2012,26th: it was decided there was no need for adding \"achieves objective of drawing conclusion\" as existing relations were providing equivalent ability. this note closes the issue and validates the class definition to be part of the OBI core\neditor = PRS" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl
property_value: OBI:0001847 "study" xsd:string

[Term]
id: OBI:0000067
name: evaluant role
def: "a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role" []
is_a: BFO:0000023 ! role
relationship: BFO:0000054 OBI:0000070 {all_only="true"} ! realized in assay
relationship: RO:0000052 BFO:0000040 ! inheres in material entity
property_value: IAO:0000111 "evaluant role" xsd:string
property_value: IAO:0000112 "When a specimen of blood is assayed for glucose concentration, the blood has the evaluant role. When measuring the mass of a mouse, the evaluant is the mouse. When measuring the time of DNA replication, the evaluant is the DNA. When measuring the intensity of light on a surface, the evaluant is the light source." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "examples of features that could be described in an evaluant: quality.... e.g. \"contains 10 pg/ml IL2\", or \"no glucose detected\")" xsd:string
property_value: IAO:0000116 "Role call - 17nov-08: JF and MC think an evaluant role is always specified input of a process. Even in the case where we have an assay taking blood as evaluant and outputting blood, the blood is not the specified output at the end of the assay (the concentration of glucose in the blood is)" xsd:string
property_value: IAO:0000117 "GROUP:  Role Branch" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
property_value: IAO:0000232 "Feb 10, 2009.  changes after discussion at OBI Consortium Workshop Feb 2-6, 2009.  accepted as core term." xsd:string

[Term]
id: OBI:0000070
name: assay
def: "A planned process that has the objective to produce information about a material entity (the evaluant) by examining it." []
is_a: OBI:0000011 ! planned process
disjoint_from: OBI:0000339 ! planning
disjoint_from: OBI:0200000 ! data transformation
relationship: BFO:0000055 OBI:0000067 ! realizes evaluant role
relationship: OBI:0000417 OBI:0000441 ! achieves_planned_objective assay objective
property_value: IAO:0000111 "assay" xsd:string
property_value: IAO:0000112 "Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "12/3/12: BP: the reference to the 'physical examination' is included to point out that a prediction is not an assay, as that does not require physical examiniation." xsd:string
property_value: IAO:0000116 "Discussion on OBI call 2023-05-01 resulted in an agreement to revise the textual definition of 'assay'.  https://github.com/obi-ontology/obi/issues/1683." xsd:string
property_value: IAO:0000117 "PlanAndPlannedProcess Branch" xsd:string
property_value: IAO:0000118 "measuring" xsd:string
property_value: IAO:0000118 "scientific observation" xsd:string
property_value: IAO:0000119 "OBI branch derived" xsd:string
property_value: OBI:0001847 "study assay" xsd:string
property_value: OBI:9991118 "any method" xsd:string

[Term]
id: OBI:0000073
name: sample preparation for assay
def: "A sample_preparation_for_assay is a protocol_application including material_enrollments and biomaterial_transformations. definition_source: OBI." []
is_a: OBI:0000094 ! material processing
property_value: IAO:0000111 "sample preparation for assay" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "PlanAndPlannedProcess Branch" xsd:string
property_value: IAO:0000118 "study" xsd:string
property_value: IAO:0000119 "OBI branch derived" xsd:string

[Term]
id: OBI:0000094
name: material processing
def: "A planned process which results in physical changes in a specified input material" []
is_a: OBI:0000011 ! planned process
relationship: OBI:0000293 BFO:0000040 {all_only="true"} ! has_specified_input material entity
relationship: OBI:0000299 OBI:0000047 ! has_specified_output processed material
relationship: OBI:0000417 OBI:0000456 ! achieves_planned_objective material transformation objective
property_value: IAO:0000111 "material processing" xsd:string
property_value: IAO:0000112 "A cell lysis, production of a cloning vector, creating a buffer." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Frank Gibson" xsd:string
property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca Serra" xsd:string
property_value: IAO:0000118 "material transformation" xsd:string
property_value: IAO:0000119 "OBI branch derived" xsd:string

[Term]
id: OBI:0000112
name: specimen role
def: "a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation" []
is_a: BFO:0000023 ! role
property_value: IAO:0000111 "specimen role" xsd:string
property_value: IAO:0000112 "liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "22Jun09.  The definition includes whole organisms, and can include a human.  The link between specimen role and study subject role has been removed.  A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role." xsd:string
property_value: IAO:0000116 "blood taken from animal: animal continues in study, whereas blood has role specimen.\nsomething taken from study subject, leaves the study and becomes the specimen." xsd:string
property_value: IAO:0000116 "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation." xsd:string
property_value: IAO:0000116 "parasite example\n- when parasite in people we study people, people are subjects and parasites are specimen\n- when parasite extracted, they become subject in the following study\nspecimen can later be subject." xsd:string
property_value: IAO:0000117 "GROUP:  Role Branch" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
property_value: IAO:0000233 https://github.com/obi-ontology/obi/issues/1013

[Term]
id: OBI:0000185
name: imaging assay
def: "An assay that produces a picture of an entity." []
is_a: OBI:0000070 ! assay
relationship: OBI:0000299 IAO:0000101 ! has_specified_output image
property_value: IAO:0000111 "imaging assay" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "PlanAndPlannedProcess Branch" xsd:string
property_value: IAO:0000119 "OBI branch derived" xsd:string

[Term]
id: OBI:0000202
name: investigation agent role
def: "A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing." []
comment: Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)
is_a: BFO:0000023 ! role
relationship: BFO:0000054 OBI:0000066 {all_only="true"} ! realized in investigation
property_value: IAO:0000111 "investigation agent role" xsd:string
property_value: IAO:0000112 "The person perform microarray experiments and submit microarray results (including raw data, processed data) with experiment description to ArrayExpress." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "Implementing a study means carrying out or performing the study and providing reagents or other materials used in the study and other tasks without which the study would not happen." xsd:string
property_value: IAO:0000116 "Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable representing investigations run by robot scientists such as ADAM (King et al, Science, 2009)" xsd:string
property_value: IAO:0000117 "GROUP:  Role Branch" xsd:string
property_value: IAO:0000118 "investigator" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
property_value: IAO:0000232 "Feb 10, 2009.  changes after discussion at OBI Consortium Workshop Feb 2-6, 2009.  accepted as core term." xsd:string
property_value: OBI:0001847 "study person role" xsd:string

[Term]
id: OBI:0000245
name: organization
def: "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000111 "organization" xsd:string
property_value: IAO:0000112 "PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that.  The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based:\n\n1) there are organization_member_roles (president, treasurer, branch\neditor), with individual persons as bearers\n\n2) there are organization_roles (employer, owner, vendor, patent holder)\n\n3) an organization has a charter / rules / bylaws, which specify what roles\nthere are, how they should be realized, and how to modify the\ncharter/rules/bylaws themselves.\n\nIt is debatable what the organization itself is (some kind of dependent\ncontinuant or an aggregate of people). This also determines who/what the\nbearer of organization_roles' are. My personal favorite is still to define\norganization as a kind of 'legal entity', but thinking it through leads to\nall kinds of questions that are clearly outside the scope of OBI.\n\nInterestingly enough, it does not seem to matter much where we place\norganization itself, as long as we can subclass it (University, Corporation,\nGovernment Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO,\nW3C, University of Oklahoma), and have it play roles.\n\nThis leads to my proposal: We define organization through the statements 1 -\n3 above, but without an 'is a' statement for now. We can leave it in its\ncurrent place in the is_a hierarchy (material entity) or move it up to\n'continuant'. We leave further clarifications to BFO, and close this issue\nfor now." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca-Serra" xsd:string
property_value: IAO:0000117 "PERSON: Susanna Sansone" xsd:string
property_value: IAO:0000119 "GROUP: OBI" xsd:string

[Term]
id: OBI:0000272
name: protocol
def: "A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process." []
is_a: IAO:0000104 ! plan specification
property_value: IAO:0000111 "protocol" xsd:string
property_value: IAO:0000112 "PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PlanAndPlannedProcess Branch" xsd:string
property_value: IAO:0000119 "OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)" xsd:string
property_value: OBI:0001847 "study protocol" xsd:string

[Term]
id: OBI:0000338
name: drawing a conclusion based on data
def: "A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion" []
is_a: OBI:0000011 ! planned process
relationship: OBI:0000293 IAO:0000027 ! has_specified_input data item
property_value: IAO:0000111 "interpreting data" xsd:string
property_value: IAO:0000112 "Concluding that a gene is upregulated in a tissue sample based on the band intensity in a western blot.  Concluding that a patient has a infection based on measurement of an elevated body temperature and reported headache. Concluding that there were problems in an investigation because data from PCR and microarray are conflicting. Concluding that 'defects in gene XYZ cause cancer due to improper DNA repair' based on data from experiments in that study that gene XYZ is involved in DNA repair, and the conclusion of a previous study that cancer patients have an increased number of mutations in this gene." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string
property_value: IAO:0000119 "Bjoern Peters" xsd:string

[Term]
id: OBI:0000339
name: planning
def: "a process of creating or modifying a plan specification" []
property_value: IAO:0000111 "planning" xsd:string
property_value: IAO:0000112 "The process of a scientist thinking about and deciding what reagents to use as part of a protocol for an experiment. Note that the scientist could be human or a \"robot scientist\" executing software." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "7/18/2011 BP: planning used to itself be a planned process. Barry Smith pointed out that this would lead to an infinite regression, as there would have to be a plan to conduct a planning process, which in itself would be the result of planning etc. Therefore, the restrictions on 'planning' were loosened to allow for informal processes that result in an 'ad hoc plan '. This required changing from 'has_specified_output some plan specifiction' to 'has_participant some plan specification'." xsd:string
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "Plans and Planned Processes Branch" xsd:string

[Term]
id: OBI:0000369
name: magnify function
def: "A magnify function is a function to increase the size of a transmitted object image through the precise arrangement of energy diffraction elements along an imaging path." []
is_a: BFO:0000034 ! function
property_value: IAO:0000111 "magnify function" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Bill Bug" xsd:string
property_value: IAO:0000117 "Daniel Schober" xsd:string
property_value: IAO:0000117 "Frank Gibson" xsd:string
property_value: IAO:0000117 "Melanie Courtot" xsd:string

[Term]
id: OBI:0000374
name: excitation function
def: "A excitation function is a function  to inject energy by bombarding a material with energetic particles (e.g., photons) thereby imbuing internal material components such as electrons with additional energy.  These internal, 'excited' particles may lead to the rupturing of covalent chemical bonds or may quickly relax back to there unexcited state with an exponential time course thereby locally emitting energy in the form of photons." []
is_a: BFO:0000034 ! function
property_value: IAO:0000111 "excitation function" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Bill Bug" xsd:string
property_value: IAO:0000117 "Daniel Schober" xsd:string
property_value: IAO:0000117 "Frank Gibson" xsd:string
property_value: IAO:0000117 "Melanie Courtot" xsd:string

[Term]
id: OBI:0000397
name: image acquisition function
def: "An image acquisition function is a function to acquire an image of a material" []
is_a: OBI:0000453 ! measure function
relationship: BFO:0000054 OBI:0001007 {all_only="true"} ! realized in image creation
relationship: RO:0000052 OBI:0000398 ! inheres in image creation device
property_value: IAO:0000111 "image acquisition function" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Frank Gibson" xsd:string

[Term]
id: OBI:0000398
name: image creation device
def: "An image creation device is a device which captures a digitized image of an object" []
is_a: OBI:0000832 ! measurement device
intersection_of: OBI:0000968 ! device
intersection_of: RO:0000085 OBI:0000397 ! has function image acquisition function
relationship: RO:0000085 OBI:0000397 ! has function image acquisition function
property_value: IAO:0000111 "image acquisition device" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "Frank Gibson" xsd:string
property_value: IAO:0000118 "image acquisition device" xsd:string
property_value: IAO:0000119 "sep:00096" xsd:string

[Term]
id: OBI:0000399
name: solid support function
def: "A solid support function is a function of a device on which an entity is kept in a defined position and prevented in its movement" []
is_a: BFO:0000034 ! function
property_value: IAO:0000111 "solid support function" xsd:string
property_value: IAO:0000112 "Taped, glued, pinned, dried or molecularly bonded to a solid support" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Daniel Schober" xsd:string
property_value: IAO:0000117 "Frank Gibson" xsd:string
property_value: IAO:0000117 "Melanie Courtot" xsd:string

[Term]
id: OBI:0000441
name: assay objective
def: "an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role)" []
is_a: IAO:0000005 ! objective specification
property_value: IAO:0000111 "assay objective" xsd:string
property_value: IAO:0000112 "the objective to determine the weight of a mouse." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PPPB branch" xsd:string
property_value: IAO:0000119 "PPPB branch" xsd:string

[Term]
id: OBI:0000453
name: measure function
def: "Measure function is a function that is borne by a processed material  and realized in a process in which information about some entity is expressed relative to some reference." []
is_a: BFO:0000034 ! function
relationship: RO:0000079 OBI:0000047 ! function of processed material
property_value: IAO:0000111 "measure function" xsd:string
property_value: IAO:0000112 "A glucometer measures blood glucose concentration, the glucometer has a measure function." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Daniel Schober" xsd:string
property_value: IAO:0000117 "PERSON: Helen Parkinson" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000117 "PERSON:Frank Gibson" xsd:string

[Term]
id: OBI:0000456
name: material transformation objective
def: "an objective specifiction that creates an specific output object from input materials." []
is_a: IAO:0000005 ! objective specification
property_value: IAO:0000111 "material transformation objective" xsd:string
property_value: IAO:0000112 "The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Frank Gibson" xsd:string
property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca-Serra" xsd:string
property_value: IAO:0000118 "artifact  creation objective" xsd:string
property_value: IAO:0000119 "GROUP: OBI PlanAndPlannedProcess Branch" xsd:string

[Term]
id: OBI:0000457
name: manufacturing
def: "A planned process with the objective to produce a processed material which will have a function for future use." []
is_a: OBI:0000094 ! material processing
relationship: OBI:0000293 BFO:0000040 ! has_specified_input material entity
relationship: OBI:0000417 OBI:0000458 ! achieves_planned_objective manufacturing objective
property_value: IAO:0000111 "manufacturing" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "A person or organization (having manufacturer role) is a participant in this process" xsd:string
property_value: IAO:0000116 "Manufacturing implies reproducibility and responsibility AR" xsd:string
property_value: IAO:0000116 "This includes a single scientist making a processed material for personal use." xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Frank Gibson" xsd:string
property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "GROUP: OBI PlanAndPlannedProcess Branch" xsd:string

[Term]
id: OBI:0000458
name: manufacturing objective
def: "is the objective to manufacture a material of a certain function (device)" []
is_a: OBI:0000456 ! material transformation objective
property_value: IAO:0000111 "manufacturing objective" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Frank Gibson" xsd:string
property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "GROUP: OBI PlanAndPlannedProcess Branch" xsd:string

[Term]
id: OBI:0000471
name: study design execution
def: "a planned process that carries out a study design" []
is_a: OBI:0000011 ! planned process
property_value: IAO:0000111 "study design execution" xsd:string
property_value: IAO:0000112 "injecting a mouse with PBS solution, weighing it, and recording the weight according to a study design." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "removed axiom has_part some (assay or 'data transformation') per discussion on protocol application mailing list to improve reasoner performance. The axiom is still desired." xsd:string
property_value: IAO:0000119 "branch derived" xsd:string
property_value: IAO:0000232 "6/11/9: edited at workshop. Used to be: study design execution is a process with the objective to generate data according to a concretized study design. The execution of a study design is part of an investigation, and minimally consists of an assay or data transformation." xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl

[Term]
id: OBI:0000571
name: manufacturer role
def: "Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process." []
is_a: BFO:0000023 ! role
relationship: BFO:0000054 OBI:0000457 {all_only="true"} ! realized in manufacturing
property_value: IAO:0000111 "manufacturer role" xsd:string
property_value: IAO:0000112 "With respect to The Accuri C6 Flow Cytometer System, the organization Accuri bears the role manufacturer role.  With respect to a transformed line of tissue culture cells derived by a specific lab, the lab whose personnel isolated the cll line bears the role manufacturer role.  With respect to a specific antibody produced by an individual scientist, the scientist who purifies, characterizes and distributes the anitbody bears the role manufacturer role." xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "GROUP:  Role Branch" xsd:string
property_value: IAO:0000119 "OBI" xsd:string

[Term]
id: OBI:0000654
name: device setting
def: "a quality inheres_in some device and is concretization of some (device_setting_specification and is_about a quality of the device" []
is_a: BFO:0000019 ! quality
relationship: RO:0000052 OBI:0000047 ! inheres in processed material
property_value: IAO:0000111 "device setting" xsd:string
property_value: IAO:0000112 "Examples, 300V for 4 hours, 200mvolts, 37degrees.A knob set a 300 V is the device setting, the protocol stating to set the instrument to 300V is a device setting specification" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000116 "There is some question of whether 'device setting' is really best modelled as a quality.  To be revisited after assay terms have been worked through. See https://github.com/obi-ontology/obi/issues/133" xsd:string
property_value: IAO:0000117 "PERSON: Frank Gibson" xsd:string

[Term]
id: OBI:0000659
name: specimen collection process
def: "A planned process with the objective of collecting a specimen." []
is_a: OBI:0000011 ! planned process
intersection_of: OBI:0000011 ! planned process
intersection_of: OBI:0000417 OBI:0000684 ! achieves_planned_objective specimen collection objective
relationship: OBI:0000293 BFO:0000040 ! has_specified_input material entity
relationship: OBI:0000299 OBI:0100051 ! has_specified_output specimen
relationship: OBI:0000417 OBI:0000684 ! achieves_planned_objective specimen collection objective
property_value: IAO:0000111 "specimen collection process" xsd:string
property_value: IAO:0000112 "drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "label  changed to 'specimen collection process' on 10/27/2014, details see tracker:\nhttp://sourceforge.net/p/obi/obi-terms/716/" xsd:string
property_value: IAO:0000116 "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation." xsd:string
property_value: IAO:0000116 "Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role." xsd:string
property_value: IAO:0000116 "Philly2013: The specimen_role for the specimen is created during the specimen collection process." xsd:string
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000118 "specimen collection" xsd:string
property_value: IAO:0000232 "5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession" xsd:string
property_value: IAO:0000232 "6/9/09: used at workshop" xsd:string

[Term]
id: OBI:0000674
name: center value
def: "A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data." []
is_a: IAO:0000027 ! data item
relationship: OBI:0000312 OBI:0200181 ! is_specified_output_of center calculation data transformation
property_value: IAO:0000111 "center value" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "PERSON: James Malone" xsd:string
property_value: IAO:0000117 "PERSON: Monnie McGee" xsd:string
property_value: IAO:0000118 "median" xsd:string

[Term]
id: OBI:0000684
name: specimen collection objective
def: "A objective specification to obtain a material entity for potential use as an input during an investigation." []
is_a: IAO:0000005 ! objective specification
property_value: IAO:0000111 "specimen collection objective" xsd:string
property_value: IAO:0000112 "The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "Bjoern Peters" xsd:string

[Term]
id: OBI:0000740
name: material sample role
def: "A material sample role is a specimen role borne by a material entity that is the output of a material sampling process." []
is_a: OBI:0000112 ! specimen role
property_value: IAO:0000111 "material sample role" xsd:string
property_value: IAO:0000112 "a role borne by a portion of blood taken to represent all the blood in an organism; the role borne by a population of humans with HIV enrolled in a study taken to represent patients with HIV in general." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "7/13/09: Note that this is a relational role: between the sample taken and the 'sampled' material of which the sample is thought to be representative off." xsd:string
property_value: IAO:0000233 https://github.com/obi-ontology/obi/issues/1013

[Term]
id: OBI:0000744
name: material sampling process
def: "A specimen gathering process with the objective to obtain a specimen that is representative of the input material entity" []
is_a: OBI:0000659 ! specimen collection process
intersection_of: OBI:0000659 ! specimen collection process
intersection_of: OBI:0000293 BFO:0000040 ! has_specified_input material entity
intersection_of: OBI:0000299 OBI:0000747 ! has_specified_output material sample
relationship: OBI:0000299 OBI:0000747 ! has_specified_output material sample
property_value: IAO:0000111 "material sampling process" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000118 "sample collection" xsd:string
property_value: IAO:0000118 "sampling" xsd:string
property_value: IAO:0000233 "https://github.com/obi-ontology/obi/issues/1002" xsd:string

[Term]
id: OBI:0000747
name: material sample
def: "A material entity that has the material sample role" []
is_a: OBI:0100051 ! specimen
intersection_of: BFO:0000040 ! material entity
intersection_of: RO:0000087 OBI:0000740 ! has role material sample role
relationship: RO:0000087 OBI:0000740 ! has role material sample role
property_value: IAO:0000111 "material sample" xsd:string
property_value: IAO:0000112 "blood drawn from patient to measure his systemic glucose level. A population of humans with HIV enrolled in a study taken to represent patients with HIV in general." xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "OBI: workshop" xsd:string
property_value: IAO:0000118 "sample population" xsd:string
property_value: IAO:0000233 https://github.com/obi-ontology/obi/issues/1013
property_value: OBI:0001847 "sample" xsd:string

[Term]
id: OBI:0000832
name: measurement device
def: "A device in which a measure function inheres." []
is_a: OBI:0000968 ! device
intersection_of: OBI:0000968 ! device
intersection_of: RO:0000085 OBI:0000453 ! has function measure function
relationship: RO:0000085 OBI:0000453 ! has function measure function
property_value: IAO:0000111 "measurement device" xsd:string
property_value: IAO:0000112 "A ruler, a microarray scanner, a Geiger counter." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "GROUP:OBI Philly workshop" xsd:string
property_value: IAO:0000119 "OBI" xsd:string

[Term]
id: OBI:0000835
name: manufacturer
def: "A person or organization that has a manufacturer role." []
is_a: BFO:0000040 ! material entity
relationship: RO:0000087 OBI:0000571 ! has role manufacturer role
property_value: IAO:0000111 "manufacturer" xsd:string
property_value: IAO:0000114 IAO:0000123

[Term]
id: OBI:0000953
name: processed specimen
def: "A specimen that has been intentionally physically modified." []
comment: A tissue sample that has been sliced and stained for a histology study.
is_a: OBI:0000047 ! processed material
is_a: OBI:0100051 ! specimen
intersection_of: OBI:0000047 ! processed material
intersection_of: OBI:0100051 ! specimen
property_value: IAO:0000111 "processed specimen" xsd:string
property_value: IAO:0000112 "A tissue sample that has been sliced and stained for a histology study.\nA blood specimen that has been centrifuged to obtain the white blood cells." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Bjoern Peters" xsd:string
property_value: IAO:0000119 "Bjoern Peters" xsd:string

[Term]
id: OBI:0000968
name: device
def: "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent." []
is_a: OBI:0000047 ! processed material
relationship: RO:0000085 BFO:0000034 ! has function function
property_value: IAO:0000111 "device" xsd:string
property_value: IAO:0000112 "A voltmeter is a measurement device which is intended to perform some measure function." xsd:string
property_value: IAO:0000112 "An autoclave is a device that sterlizes instruments or contaminated waste by applying high temperature and pressure." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "2012-12-17 JAO: In common lab usage, there is a distinction made between devices and reagents that is difficult to model. Therefore we have chosen to specifically exclude reagents from the definition of \"device\", and are enumerating the types of roles that a reagent can perform.\n\n2013-6-5 MHB: The following clarifications are outcomes of the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions.  Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear.  For example:\n\n(1) An HPLC machine is considered a device, but has a column that holds a stationary phase resin as an operational component.  This resin qualifies as a device if it participates purely in size exclusion, but bears a reagent role that is realized in the running of a column if it interacts electrostatically or chemically with the evaluant. The container the resin is in (“the column”) considered alone is a device. So the entire column as well as the entire HPLC machine are devices that have a reagent as an operating part.\n\n(2) A pH meter is a device, but its electrode component bears a reagent role in virtue of its interacting directly with the evaluant in execution of an assay.\n\n(3) A gel running  box  is a device that has a metallic lead as a component that participates in a chemical reaction with the running buffer when a charge is passed through it.  This metallic lead is considered to have a reagent role as a component of this device realized in the running of a gel.\n\nIn the examples above, a reagent is an operational component of a device, but the device itself does not realize a reagent role (as bearing a reagent role is not transitive across the part_of relation).  In this way, the asserted disjointness between a reagent and device holds, as both roles are never realized in the same bearer during execution of an assay." xsd:string
property_value: IAO:0000117 "PERSON: Helen Parkinson" xsd:string
property_value: IAO:0000118 "instrument" xsd:string
property_value: IAO:0000119 "OBI development call 2012-12-17." xsd:string

[Term]
id: OBI:0001007
name: image creation
def: "A planned process that captures an image of an object." []
is_a: OBI:0000011 ! planned process
relationship: OBI:0000293 BFO:0000040 ! has_specified_input material entity
relationship: OBI:0000299 IAO:0000101 ! has_specified_output image
property_value: IAO:0000111 "image acquisition" xsd:string
property_value: IAO:0000112 "Taking a polaroid picture of a patients skin lesion; Using a digital camera to take a picture of a gel" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "PERSON: Jie Zheng" xsd:string
property_value: IAO:0000118 "image acquisition" xsd:string

[Term]
id: OBI:0001896
name: investigation assay specification
def: "A plan specification which indicates the assay type used to obtain data." []
is_a: IAO:0000104 ! plan specification
relationship: BFO:0000050 OBI:0500000 ! part of study design
relationship: IAO:0000136 OBI:0000070 ! is about assay
property_value: dce:source "NIAID GSCID-BRC" xsd:string
property_value: IAO:0000111 "investigation assay specification" xsd:string
property_value: IAO:0000112 "Some examples of Project Method are Sequence, Array, Mass Spectrometry" xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: Chris Stoeckert, Jie Zheng" xsd:string
property_value: IAO:0000119 "NIAID GSCID-BRC metadata working group" xsd:string
property_value: OBI:0001886 "Project Method" xsd:string

[Term]
id: OBI:0001930
name: categorical value specification
def: "A value specification that is specifies one category out of a fixed number of nominal categories" []
is_a: OBI:0001933 ! value specification
property_value: IAO:0000111 "categorical value specification" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "PERSON:Bjoern Peters" xsd:string

[Term]
id: OBI:0001931
name: scalar value specification
def: "A value specification that consists of two parts: a numeral and a unit label" []
is_a: OBI:0001933 ! value specification
property_value: IAO:0000111 "scalar value specification" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "PERSON:Bjoern Peters" xsd:string

[Term]
id: OBI:0001933
name: value specification
def: "An information content entity that specifies a value within a classification scheme or on a quantitative scale." []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "value specification" xsd:string
property_value: IAO:0000112 "The value of 'positive' in a classification scheme of \"positive or negative\"; the value of '20g' on the quantitative scale of mass." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "This term is currently a descendant of 'information content entity', which requires that it 'is about' something. A value specification of '20g' for a measurement data item of the mass of a particular mouse 'is about' the mass of that mouse. However there are cases where a value specification is not clearly about any particular. In the future we may change 'value specification' to remove the 'is about' requirement." xsd:string
property_value: IAO:0000117 "PERSON:Bjoern Peters" xsd:string

[Term]
id: OBI:0002076
name: collection of specimens
def: "A material entity that has two or more specimens as its parts." []
is_a: BFO:0000040 ! material entity
intersection_of: BFO:0000040 ! material entity
intersection_of: RO:0002351 OBI:0100051 {all_only="true"} ! has member specimen
property_value: dce:source "Biobank" xsd:string
property_value: IAO:0000111 "collection of specimens" xsd:string
property_value: IAO:0000112 "Blood cells collected from multiple donors over the course of a study." xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "Details see tracker: https://sourceforge.net/p/obi/obi-terms/778/" xsd:string
property_value: IAO:0000117 "Person: Chris Stoeckert, Jie Zheng" xsd:string
property_value: IAO:0000119 "OBIB, OBI" xsd:string

[Term]
id: OBI:0002119
name: microscopy assay
def: "An imaging assay that utilizes a microscope to magnify features of the visualized material of interest that are not visible to naked eye." []
is_a: OBI:0000185 ! imaging assay
intersection_of: OBI:0000185 ! imaging assay
intersection_of: OBI:0000293 OBI:0400169 {all_some="true"} ! has_specified_input microscope
relationship: OBI:0000293 OBI:0400169 ! has_specified_input microscope
property_value: IAO:0000111 "microscopy assay" xsd:string
property_value: IAO:0000112 "Lung, liver, and spleen tissue samples were collected from female BALB/c mice and fixed in 100% formalin solution, embedded in paraffin, sectioned, and stained with hematoxylin and eosin. The stained samples were examined for signs of pathological changes under light microscopy." xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "ImmPort" xsd:string
property_value: IAO:0000119 "PMID:21685355" xsd:string

[Term]
id: OBI:0100026
name: organism
def: "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000111 "organism" xsd:string
property_value: IAO:0000112 "animal" xsd:string
property_value: IAO:0000112 "fungus" xsd:string
property_value: IAO:0000112 "plant" xsd:string
property_value: IAO:0000112 "virus" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')" xsd:string
property_value: IAO:0000116 "13-02-2009:\nOBI doesn't take position as to  when an organism starts or ends being an organism - e.g. sperm, foetus.\nThis issue is outside the scope of OBI." xsd:string
property_value: IAO:0000117 "GROUP: OBI Biomaterial Branch" xsd:string
property_value: IAO:0000119 "WEB: http://en.wikipedia.org/wiki/Organism" xsd:string

[Term]
id: OBI:0100051
name: specimen
def: "A material entity that has the specimen role." []
is_a: BFO:0000040 ! material entity
intersection_of: BFO:0000040 ! material entity
intersection_of: RO:0000087 OBI:0000112 ! has role specimen role
relationship: RO:0000087 OBI:0000112 ! has role specimen role
property_value: IAO:0000111 "specimen" xsd:string
property_value: IAO:0000112 "Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation." xsd:string
property_value: IAO:0000117 "PERSON: James Malone" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "GROUP: OBI Biomaterial Branch" xsd:string
property_value: IAO:0000233 https://github.com/obi-ontology/obi/issues/1013

[Term]
id: OBI:0200000
name: data transformation
def: "A planned process that produces output data from input data." []
is_a: OBI:0000011 ! planned process
relationship: OBI:0000293 IAO:0000027 {all_only="true"} ! has_specified_input data item
relationship: OBI:0000417 OBI:0200166 ! achieves_planned_objective data transformation objective
property_value: IAO:0000111 "data transformation" xsd:string
property_value: IAO:0000112 "The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Elisabetta Manduchi" xsd:string
property_value: IAO:0000117 "Helen Parkinson" xsd:string
property_value: IAO:0000117 "James Malone" xsd:string
property_value: IAO:0000117 "Melanie Courtot" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000117 "Richard Scheuermann" xsd:string
property_value: IAO:0000117 "Ryan Brinkman" xsd:string
property_value: IAO:0000117 "Tina Hernandez-Boussard" xsd:string
property_value: IAO:0000118 "data analysis" xsd:string
property_value: IAO:0000118 "data processing" xsd:string
property_value: IAO:0000119 "Branch editors" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl

[Term]
id: OBI:0200166
name: data transformation objective
def: "An objective specification to transformation input data into output data" []
is_a: IAO:0000005 ! objective specification
property_value: IAO:0000111 "data transformation objective" xsd:string
property_value: IAO:0000112 "normalize objective" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "Modified definition in 2013 Philly OBI workshop" xsd:string
property_value: IAO:0000117 "James Malone" xsd:string
property_value: IAO:0000119 "PERSON: James Malone" xsd:string

[Term]
id: OBI:0200177
name: center calculation objective
def: "A center calculation objective is a data transformation objective where the aim is to calculate the center of an input data set." []
is_a: OBI:0200166 ! data transformation objective
property_value: IAO:0000111 "center calculation objective" xsd:string
property_value: IAO:0000112 "A mean calculation which has center calculation objective is a data transformation in which the center of the input data is discovered through the calculation of a mean average." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "James Malone" xsd:string
property_value: IAO:0000119 "PERSON: James Malone" xsd:string

[Term]
id: OBI:0200181
name: center calculation data transformation
def: "A center calculation data transformation is a data transformation that has objective of center calculation." []
is_a: OBI:0200000 ! data transformation
property_value: IAO:0000111 "center calculation data transformation" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "James Malone" xsd:string
property_value: IAO:0000119 "PERSON: James Malone" xsd:string

[Term]
id: OBI:0400169
name: microscope
def: "A microscope is an instrument which magnifies the view on objects (too small to be viewed by the naked eye) under increased resolution. A microscope can be an optical instrument but also and electronic instrument. There are various kind of optical microscopes, e.g confocal microscope, epifluoresence microscope)" []
is_a: OBI:0000398 ! image creation device
relationship: RO:0000085 OBI:0000369 ! has function magnify function
property_value: IAO:0000111 "microscope" xsd:string
property_value: IAO:0000112 "PMID:18466942. A light and transmission electron microscope study of hepatic portal tracts in the rhesus monkey (Macacus rhesus). Tissue Cell. 2008 May 6" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "PERSON: Phillippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "wikipedia" xsd:string

[Term]
id: OBI:0400170
name: microscope slide
def: "A microscope slide is a device usually made of glass which is used as a solid matrix for (biological) material deposited on its surface and which is compatible for use with a microscope instrument" []
is_a: OBI:0000968 ! device
relationship: RO:0000085 OBI:0000399 ! has function solid support function
property_value: IAO:0000111 "microscope slide" xsd:string
property_value: IAO:0000112 "PMID: 9668975.Microscope slide for enhanced analysis of DNA damage using the comet assay." xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "PERSON: Phillippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "OBI biomaterial branch" xsd:string

[Term]
id: OBI:0500000
name: study design
def: "A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution." []
is_a: IAO:0000104 ! plan specification
relationship: BFO:0000051 OBI:0000272 ! has part protocol
property_value: IAO:0000111 "study design" xsd:string
property_value: IAO:0000112 "a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "Editor note: there is at least an implicit restriction on the kind of data transformations that can be done based on the measured data available." xsd:string
property_value: IAO:0000117 "PERSON: Chris Stoeckert" xsd:string
property_value: IAO:0000118 "experimental design" xsd:string
property_value: IAO:0000232 "rediscussed at length (MC/JF/BP). 12/9/08). The definition was clarified to differentiate it from protocol." xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl

[Term]
id: PATO:0000001
name: quality
namespace: quality
alt_id: PATO:0000072
def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG]
is_a: BFO:0000020 ! specifically dependent continuant

[Term]
id: PATO:0000033
name: concentration of
namespace: quality
def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [Wikipedia:http\://en.wikipedia.org/wiki/concentration]
subset: attribute_slim
subset: relational_slim
subset: scalar_slim
synonym: "concentration" EXACT []
is_a: PATO:0000070 ! amount

[Term]
id: PATO:0000051
name: morphology
namespace: quality
def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0001241 ! physical object quality

[Term]
id: PATO:0000070
name: amount
namespace: quality
alt_id: PATO:0000053
alt_id: PATO:0000071
alt_id: PATO:0001169
alt_id: PATO:0001226
def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG]
comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10.
subset: attribute_slim
synonym: "count in organism" RELATED []
synonym: "number" RELATED []
synonym: "presence" RELATED []
synonym: "presence or absence in organism" EXACT []
synonym: "quantitative" EXACT []
is_a: PATO:0103000 ! quantitative
relationship: RO:0015012 PATO:0001555 ! has number of

[Term]
id: PATO:0000117
name: size
namespace: quality
def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0000051 ! morphology

[Term]
id: PATO:0000119
name: height
namespace: quality
def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension." [PATOC:GVG]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001708 ! 1-D extent

[Term]
id: PATO:0000122
name: length
namespace: quality
def: "A 1-D extent quality which is equal to the distance between two points." [PATOC:GVG]
comment: Length often refers to the longer or longest dimension of an object, however, this is not always true. See https://github.com/pato-ontology/pato/issues/337 for full discussion.
subset: attribute_slim
subset: mpath_slim
subset: scalar_slim
is_a: PATO:0001708 ! 1-D extent
property_value: seeAlso "https://github.com/pato-ontology/pato/issues/337" xsd:string

[Term]
id: PATO:0000125
name: mass
namespace: quality
def: "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." [PATOC:GVG]
comment: For any biological use of PATO, the concept that should be used is 'mass' and not 'weight'. For example, increased weight of an organism.
subset: attribute_slim
subset: relational_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality

[Term]
id: PATO:0000133
name: orientation
namespace: quality
alt_id: PATO:0000137
def: "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." [PATOC:JE]
subset: attribute_slim
subset: relational_slim
synonym: "amount of rotation" RELATED []
synonym: "angle" RELATED []
synonym: "angular magnitude" RELATED []
synonym: "angular placement" EXACT []
synonym: "plane angle" RELATED []
is_a: PATO:0000140 ! position

[Term]
id: PATO:0000140
name: position
namespace: quality
alt_id: PATO:0001032
alt_id: PATO:0001631
def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." [PATOC:GVG]
subset: attribute_slim
synonym: "location" EXACT []
synonym: "placement" EXACT []
synonym: "relational spatial quality" EXACT []
is_a: PATO:0001018 ! physical quality

[Term]
id: PATO:0000146
name: temperature
namespace: quality
def: "A physical quality of the thermal energy of a system." [PATOC:GVG]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality

[Term]
id: PATO:0000921
name: width
namespace: quality
def: "A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite." [PATOC:GVG]
comment: Width often refers to the dimension that is greater than the extent in only one of the other two orthogonal dimensions, however, this is not always true. See https://github.com/pato-ontology/pato/issues/337 for full discussion.
subset: attribute_slim
subset: scalar_slim
synonym: "breadth" RELATED []
is_a: PATO:0001708 ! 1-D extent
property_value: seeAlso "https://github.com/pato-ontology/pato/issues/337" xsd:string

[Term]
id: PATO:0001018
name: physical quality
namespace: quality
alt_id: PATO:0002079
def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG]
subset: attribute_slim
synonym: "relational physical quality" EXACT []
xref: Wikipedia:Physical_property
is_a: PATO:0001241 ! physical object quality

[Term]
id: PATO:0001019
name: mass density
namespace: quality
def: "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size." [WordNet:WordNet]
subset: attribute_slim
subset: scalar_slim
synonym: "density" RELATED []
is_a: PATO:0001018 ! physical quality

[Term]
id: PATO:0001241
name: physical object quality
namespace: quality
alt_id: PATO:0001237
alt_id: PATO:0001238
def: "A quality which inheres in a continuant." [PATOC:GVG]
comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.
synonym: "monadic quality of a continuant" EXACT []
synonym: "monadic quality of an object" NARROW []
synonym: "monadic quality of continuant" NARROW []
synonym: "multiply inhering quality of a physical entity" EXACT []
synonym: "quality of a continuant" EXACT []
synonym: "quality of a single physical entity" EXACT []
synonym: "quality of an object" EXACT []
synonym: "quality of continuant" EXACT []
xref: snap:Quality
is_a: PATO:0000001 ! quality

[Term]
id: PATO:0001242
name: wavelength
namespace: quality
def: "A physical quality which is equal to the distance between repeating units of a wave pattern." [PATOC:GVG]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality

[Term]
id: PATO:0001555
name: has number of
namespace: quality
def: "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." [PATOC:CJM]
subset: attribute_slim
subset: relational_slim
synonym: "cardinality" RELATED []
synonym: "extra or missing physical or functional parts" EXACT []
synonym: "has or lacks parts of type" EXACT []
synonym: "mereological quality" EXACT []
synonym: "number" RELATED []
synonym: "number of" EXACT []
xref: OBO_REL:has_part
is_a: PATO:0000070 ! amount

[Term]
id: PATO:0001595
name: depth
namespace: quality
def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimension." [WordNet:WordNet]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001708 ! 1-D extent

[Term]
id: PATO:0001708
name: 1-D extent
namespace: quality
def: "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension." [PATOC:GVG]
subset: attribute_slim
synonym: "1-D size" EXACT []
is_a: PATO:0000117 ! size

[Term]
id: PATO:0002497
name: lateral orientation
namespace: quality
def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally." [PATOC:WD]
subset: value_slim
synonym: "laterally directed" EXACT []
is_a: PATO:0000133 ! orientation
property_value: dcterms:contributor https://orcid.org/0000-0002-2061-091X
creation_date: 2013-10-10T05:16:45Z

[Term]
id: PATO:0005024
name: longitudinal orientation
namespace: quality
def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis." [PATOC:WD]
subset: value_slim
is_a: PATO:0000133 ! orientation
property_value: dcterms:contributor https://orcid.org/0000-0003-3162-7490
creation_date: 2014-10-17T14:24:19Z

[Term]
id: PATO:0103000
name: quantitative
namespace: quality
def: "A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value." [https://libguides.macalester.edu/c.php?g=527786&p=3608639, https://www.nnlm.gov/guides/data-glossary/quantitative-data]
is_a: PATO:0000001 ! quality
created_by: https://orcid.org/0000-0001-8314-2140

[Term]
id: STATO:0000039
name: statistic
def: "a statistic is a measurement datum to describe a dataset or a variable. It is generated by a calculation on set of observed data." []
is_a: IAO:0000027 ! data item
relationship: IAO:0000136 IAO:0000100 ! is about
property_value: IAO:0000112 "" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Alejandra Gonzalez-Beltran" xsd:string
property_value: IAO:0000117 "Orlaith Burke" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "STATO, adapted from wikipedia (http://en.wikipedia.org/wiki/Statistic)." xsd:string
property_value: STATO:0000032 "statistic" xsd:string

[Term]
id: STATO:0000050
name: signal to noise ratio
def: "signal to noise ratio is a measurement datum comparing the amount of meaningful, useful or interesting data (the signal) to the amount of irrelevant or false data (the noise). Depending on the field and domain of application, different variables will be used to determinate a 'signal to noise ratio'. In statistics, the definition of signal to noise ratio is the ratio of the mean of a measurement to its standard deviation. It thus corresponds to the inverse of the coefficient of variation" []
is_a: STATO:0000184 ! ratio
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Alejandra Gonzalez-Beltran" xsd:string
property_value: IAO:0000117 "Orlaith Burke" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "adapted from Wikipedia:\nhttp://en.wikipedia.org/wiki/Signal-to-noise_ratio#Alternative_definition\nlast accessed: 2013-10-18" xsd:string
property_value: STATO:0000032 "S/N" xsd:string
property_value: STATO:0000032 "SNR" xsd:string
property_value: STATO:0000391 "http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.signaltonoise.html#scipy.stats.signaltonoise" xsd:string

[Term]
id: STATO:0000184
name: ratio
def: "A ratio is a data item which is formed with two numbers r and s is written r/s, where r is the numerator and s is the denominator. The ratio of r to s is equivalent to the quotient r/s." []
is_a: STATO:0000039 ! statistic
intersection_of: STATO:0000101 IAO:0000027 ! has numerator data item
intersection_of: STATO:0000259 IAO:0000027 ! has denominator data item
relationship: STATO:0000101 IAO:0000027 ! has numerator data item
relationship: STATO:0000259 IAO:0000027 ! has denominator data item
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "review formal definition as both numerator and denominator should be of the same type, not just some data item" xsd:string
property_value: IAO:0000117 "Alejandra Gonzalez-Beltran" xsd:string
property_value: IAO:0000117 "Orlaith Burke" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "adapted from Wolfram Alpha:\nhttps://www.wolframalpha.com/share/clip?f=d41d8cd98f00b204e9800998ecf8427efdcsig76g7" xsd:string

[Term]
id: UO:0000001
name: length unit
comment: "A unit which is a standard measure of the distance between two points." [Wikipedia:Wikipedia]
is_a: IAO:0000003 ! measurement unit label

[Term]
id: UO:0000002
name: mass unit
comment: "A unit which is a standard measure of the amount of matter/energy of a physical object." [Wikipedia:Wikipedia]
is_a: IAO:0000003 ! measurement unit label

[Term]
id: UO:0000008
name: meter
comment: "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second." [BIPM:BIPM, NIST:NIST]
synonym: "m" EXACT []
synonym: "metre" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0000009
name: kilogram
comment: "A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France." [BIPM:BIPM, NIST:NIST]
synonym: "kg" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000015
name: centimeter
comment: "A length unit which is equal to one hundredth of a meter or 10^[-2] m." [NIST:NIST]
synonym: "centimetre" EXACT []
synonym: "cm" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0000016
name: millimeter
comment: "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST]
synonym: "millimetre" EXACT []
synonym: "mm" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0000017
name: micrometer
comment: "A length unit which is equal to one millionth of a meter or 10^[-6] m." [NIST:NIST]
synonym: "micrometre" EXACT []
synonym: "micron" EXACT []
synonym: "um" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0000018
name: nanometer
comment: "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST]
synonym: "nanometre" EXACT []
synonym: "nm" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0000019
name: angstrom
comment: "A length unit which is equal to 10 [-10] m." [NIST:NIST]
synonym: "Å" EXACT []
is_a: UO:1000019 ! angstrom based unit

[Term]
id: UO:0000020
name: picometer
comment: "A length unit which is equal to 10^[-12] m." [NIST:NIST]
synonym: "picometre" EXACT []
synonym: "pm" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0000021
name: gram
comment: "A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg." [NIST:NIST]
synonym: "g" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000022
name: milligram
comment: "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG]
synonym: "mg" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000023
name: microgram
comment: "A mass unit which is equal to one millionth of a gram or 10^[-6] g." [UOC:GVG]
synonym: "ug" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000024
name: nanogram
comment: "A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g." [UOC:GVG]
synonym: "ng" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000025
name: picogram
comment: "A mass unit which is equal to 10^[-12] g." [UOC:GVG]
synonym: "pg" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000026
name: femtogram
comment: "A mass unit which is equal to 10^[-15] g." [NIST:NIST]
synonym: "fg" EXACT []
is_a: UO:1000021 ! gram based unit

[Term]
id: UO:0000051
name: concentration unit
comment: "A unit which represents a standard measurement of how much of a given substance there is mixed with another substance." [UOC:GVG]
is_a: IAO:0000003 ! measurement unit label

[Term]
id: UO:0000055
name: molar mass unit
comment: "A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules." [Wikipedia:Wikipedia]
is_a: UO:0000002 ! mass unit

[Term]
id: UO:0000061
name: unit of molarity
comment: "A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution." [UOC:GVG]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000062
name: molar
comment: "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L)." [UOC:GVG]
synonym: "M" EXACT []
is_a: UO:1000062 ! molar based unit

[Term]
id: UO:0000063
name: millimolar
comment: "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." [UOC:GVG]
synonym: "mM" EXACT []
is_a: UO:1000062 ! molar based unit

[Term]
id: UO:0000064
name: micromolar
comment: "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M." [UOC:GVG]
synonym: "uM" EXACT []
is_a: UO:1000062 ! molar based unit

[Term]
id: UO:0000065
name: nanomolar
comment: "A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M." [UOC:GVG]
synonym: "nM" EXACT []
is_a: UO:1000062 ! molar based unit

[Term]
id: UO:0000066
name: picomolar
comment: "A unit of molarity which is equal to 10^[-12] M." [UOC:GVG]
synonym: "pM" EXACT []
is_a: UO:1000062 ! molar based unit

[Term]
id: UO:0000067
name: unit of molality
comment: "A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent." [UOC:GVG]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000068
name: molal
comment: "A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg)." [UOC:GVG]
synonym: "m" EXACT []
is_a: UO:1000068 ! molal based unit

[Term]
id: UO:0000069
name: millimolal
comment: "A molality unit which is equal to one thousandth of a molal or 10^[-3] m." [UOC:GVG]
synonym: "mm" EXACT []
is_a: UO:1000068 ! molal based unit

[Term]
id: UO:0000070
name: micromolal
comment: "A molality unit which is equal to one millionth of a molal or 10^[-6] m." [UOC:GVG]
synonym: "um" EXACT []
is_a: UO:1000068 ! molal based unit

[Term]
id: UO:0000071
name: nanomolal
comment: "A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m." [UOC:GVG]
synonym: "nm" EXACT []
is_a: UO:1000068 ! molal based unit

[Term]
id: UO:0000072
name: picomolal
comment: "A molality unit which is equal to 10^[-12] m." [UOC:GVG]
synonym: "pm" EXACT []
is_a: UO:1000068 ! molal based unit

[Term]
id: UO:0000073
name: femtomolar
comment: "A unit of molarity which is equal to 10^[-15] M." [UOC:GVG]
synonym: "fM" EXACT []
is_a: UO:1000062 ! molar based unit

[Term]
id: UO:0000074
name: unit of normality
comment: "A unit of concentration which highlights the chemical nature of salts." [Wikipedia:Wikipedia]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000075
name: normal
comment: "A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule." [Wikipedia:Wikipedia]
synonym: "N" EXACT []
is_a: UO:1000075 ! normal based unit

[Term]
id: UO:0000076
name: mole fraction
comment: "A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution." [Wikipedia:Wikipedia]
synonym: "(x)" EXACT []
synonym: "chi" EXACT []
is_a: UO:1000076 ! mole fraction based unit

[Term]
id: UO:0000087
name: kilogram per mole
comment: "A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound." [NIST:NIST]
synonym: "kg/mol" EXACT []
is_a: UO:1000088 ! gram per mole based unit

[Term]
id: UO:0000088
name: gram per mole
comment: "A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound." [NIST:NIST]
synonym: "g/mol" EXACT []
is_a: UO:1000088 ! gram per mole based unit

[Term]
id: UO:0000163
name: mass percentage
comment: "A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture." [Wikipedia:Wikipedia]
synonym: "w/w" EXACT []
synonym: "weight-weight percentage" EXACT []
is_a: UO:1000163 ! mass percentage based unit

[Term]
id: UO:0000164
name: mass volume percentage
comment: "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG]
synonym: "(w/v)" EXACT []
synonym: "weight-volume percentage" EXACT []
is_a: UO:1000164 ! mass volume percentage based unit

[Term]
id: UO:0000165
name: volume percentage
comment: "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution." [UOC:GVG]
synonym: "% (v/v)" EXACT []
is_a: UO:1000165 ! volume percentage based unit

[Term]
id: UO:0000177
name: unit per volume unit
comment: "A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution." [Webmd:Webmd]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000178
name: unit per milliliter
comment: "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter." [Webmd:Webmd]
synonym: "U/ml" EXACT []
synonym: "unit per millilitre" EXACT []
is_a: UO:1000178 ! unit per milliliter based unit

[Term]
id: UO:0000179
name: unit per liter
comment: "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter." [UOC:GVG]
synonym: "U/l" EXACT []
synonym: "unit per litre" EXACT []
is_a: UO:1000179 ! unit per liter based unit

[Term]
id: UO:0000180
name: mass per unit volume
comment: "A concentration unit which is a standard measure of the mass of a substance in a given volume (density)." [Wikipedia:Wikipedia]
is_a: UO:1000180 ! mass per unit volume based unit

[Term]
id: UO:0000196
name: pH
comment: "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+)." [Wikipedia:Wikipedia]
is_a: UO:1000196 ! pH based unit

[Term]
id: UO:0000200
name: cell concentration unit
comment: "A concentration unit which denotes the average cell number in a given volume." [Bioedonline:Bioedonline]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000201
name: cells per milliliter
comment: "A unit of cell concentration which is equal to one cell in a volume of 1 milliliter." [Bioedonline:Bioedonline]
synonym: "cells per millilitre" EXACT []
synonym: "cells per ml" EXACT []
is_a: UO:1000201 ! cells per milliliter based unit

[Term]
id: UO:0000202
name: catalytic (activity) concentration unit
comment: "A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume." [UOC:GVG]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000203
name: katal per cubic meter
comment: "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter." [NIST:NIST]
synonym: "kat/m^[3]" EXACT []
synonym: "katal per cubic metre" EXACT []
is_a: UO:1000203 ! katal per cubic meter based unit

[Term]
id: UO:0000204
name: katal per liter
comment: "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter." [NIST:NIST]
synonym: "kat/l" EXACT []
synonym: "katal per litre" EXACT []
is_a: UO:1000204 ! katal per liter based unit

[Term]
id: UO:0000205
name: volume per unit volume
comment: "A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution." [NIST:NIST]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000206
name: milliliter per cubic meter
comment: "A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution." [NIST:NIST]
synonym: "millilitre per cubic metre" EXACT []
synonym: "ml/m^[3]" EXACT []
is_a: UO:0000205 ! volume per unit volume

[Term]
id: UO:0000207
name: milliliter per liter
comment: "A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution." [NIST:NIST]
synonym: "millilitre per litre" EXACT []
synonym: "ml/l" EXACT []
is_a: UO:0000205 ! volume per unit volume

[Term]
id: UO:0000212
name: colony forming unit per volume
comment: "A concentration unit which a measure of viable bacterial numbers in a given volume." [Wikipedia:Wikipedia]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000213
name: colony forming unit per milliliter
comment: "A colony forming unit which a measure of viable bacterial numbers in one milliliter." [Wikipedia:Wikipedia]
synonym: "cfu/ml" EXACT []
synonym: "colony forming unit per millilitre" EXACT []
is_a: UO:1000213 ! colony forming unit per milliliter based unit

[Term]
id: UO:0000214
name: plaque forming unit per volume
comment: "A concentration unit which a measure of plaque forming units in a given volume." [UOC:GVG]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000215
name: plaque forming unit per milliliter
comment: "A concentration unit which a measure of plaque forming units in one milliliter." [UOC:GVG]
synonym: "pfu/ml" EXACT []
synonym: "plaque forming unit per millilitre" EXACT []
is_a: UO:1000215 ! plaque forming unit per milliliter based unit

[Term]
id: UO:0000221
name: dalton
comment: "An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state." [Wikipedia:Wikipedia]
synonym: "amu" EXACT []
synonym: "Da" EXACT []
synonym: "u" EXACT []
synonym: "unified atomic mass unit" EXACT []
is_a: UO:1000221 ! dalton based unit

[Term]
id: UO:0000222
name: kilodalton
comment: "A mass unit which is equal to one thousand daltons." [Wikipedia:Wikipedia]
synonym: "kDa" EXACT []
is_a: UO:1000221 ! dalton based unit

[Term]
id: UO:0000276
name: amount per container
comment: "A concentration unit which is a standard measure of the amount of a substance in a given container." [UOC:GVG]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000277
name: ug/disk
comment: "A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited." [UOC:MD]
is_a: UO:0000276 ! amount per container

[Term]
id: UO:0000278
name: nmole/disk
comment: "A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited." [UOC:MD]
is_a: UO:0000276 ! amount per container

[Term]
id: UO:0000279
name: milliunits per milliliter
comment: "A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter." [UOC:GVG]
synonym: "milliunits per millilitre" EXACT []
synonym: "mU/ml" EXACT []
is_a: UO:0000177 ! unit per volume unit

[Term]
id: UO:0000307
name: dose unit
comment: "A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered to a recipient subject, expressed in terms of the size of the subject." [UO:PC]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000308
name: milligram per kilogram
comment: "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]
is_a: UO:0000307 ! dose unit

[Term]
id: UO:0000309
name: milligram per square meter
comment: "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per square meter of surface area of the recipient subject." [UO:PC]
is_a: UO:0000307 ! dose unit

[Term]
id: UO:0000310
name: dosage unit
comment: "A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered over time to a recipient subject, expressed in terms of the size of the subject." [UO:PC]
is_a: UO:1000310 ! dosage unit based unit

[Term]
id: UO:0000311
name: milligram per kilogram per day
comment: "A dosage unit which is equal to 1 milligram per day of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]
is_a: UO:0000310 ! dosage unit

[Term]
id: UO:0000316
name: cells per microliter
comment: "A unit of cell concentration which is equal to one cell in a volume of 1 microliter." [UO:GVG]
synonym: "cells per microlitre" EXACT []
synonym: "cells per ul" EXACT []
is_a: UO:0000200 ! cell concentration unit

[Term]
id: UO:0000317
name: cells per well
comment: "A unit of cell concentration which is equal to 1 cell in a well or discrete container of arbitrary volume." [UO:PC]
is_a: UO:0000200 ! cell concentration unit

[Term]
id: UO:0000319
name: radioactivity concentration
comment: "A concentration unit which is a standard measure of the amount of radioactivity in a given volume." [UO:GVG]
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:0000320
name: curie per liter
comment: "A unit of radioactivity concentration which is equal to one curie in a volume of 1 liter." [UO:GVG]
synonym: "curie per litre" EXACT []
is_a: UO:0000319 ! radioactivity concentration

[Term]
id: UO:0000321
name: microcurie per milliliter
comment: "A unit of radioactivity concentration which is equal to one micro curie in a volume of 1 liter." [UO:GVG]
synonym: "microcurie per millilitre" EXACT []
is_a: UO:0000319 ! radioactivity concentration

[Term]
id: UO:0000326
name: centiMorgan
comment: "A unit used to express distances on a genetic map. In genetic mapping, distances between markers are determined by measuring the rate of meoitic recombination between them, which increases proportionately with the distance separating them. A cM is defined as the length of an interval in which there is a 1% probability of recombination. On the average, 1 cM is roughly equivalent to 1 megabase (Mb) of DNA, although this can vary widely due to hot and cold spots of recombination." [NCBI:http\\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]
synonym: "cM" EXACT []
is_a: UO:0000001 ! length unit

[Term]
id: UO:0000327
name: centiRay
comment: "A unit of genetic map distance defined corresponding to an interval in which there is a 1% probability of X-irradiation induced breakage. To be completely specified, the unit must be qualified by the radiation in dosage in rads (e.g. cR8000), because this determines the actual breakage probability." [NCBI:http\\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]
synonym: "cR" EXACT []
is_a: UO:0000001 ! length unit

[Term]
id: UO:0010003
name: micromole per litre
comment: "A specific concentration unit which is equal to 1 micromole in a given volume of one thousandth of a cubic meter." [NIST:NIST]
is_a: UO:0000067 ! unit of molality

[Term]
id: UO:0010004
name: micromole per kilogram
comment: "A specific concentration unit which is equal to 1 micromole of a given substance per kilogram of solvent." [UOB:LKSR]
is_a: UO:0000067 ! unit of molality

[Term]
id: UO:0010009
name: milli
comment: "A mass unit which is equal to 1/12 the mass of 12C" [Wikipedia:Wikipedia]
synonym: "mDa" EXACT []
synonym: "milli unified atomic mass unit" EXACT []
synonym: "millidalton" EXACT []
synonym: "mmu" EXACT []
is_a: UO:0000002 ! mass unit

[Term]
id: UO:0010011
name: inch
comment: "A length unit which is equal to 0.0254 metres." [Wikipedia:Wikpiedia]
synonym: "in" EXACT []
is_a: UO:1010011 ! inch based unit

[Term]
id: UO:0010012
name: thou
comment: "A length unit which is equal to 0.0254 millimetres." [Wikipedia:Wikpiedia]
synonym: "mil" EXACT []
synonym: "th" EXACT []
is_a: UO:1010012 ! thou based unit

[Term]
id: UO:0010013
name: foot
comment: "A length unit which is equal to 0.3048 metres, or 12 inches." [Wikipedia:Wikpiedia]
synonym: "ft" EXACT []
is_a: UO:1010013 ! foot based unit

[Term]
id: UO:0010014
name: yard
comment: "A length unit which is equal to 0.9144 metres, or 3 feet." [Wikipedia:Wikpiedia]
synonym: "yd" EXACT []
is_a: UO:1010014 ! yard based unit

[Term]
id: UO:0010015
name: chain
comment: "A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards." [Wikipedia:Wikpiedia]
synonym: "ch" EXACT []
is_a: UO:1010015 ! chain based unit

[Term]
id: UO:0010016
name: furlong
comment: "A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains." [Wikipedia:Wikpiedia]
synonym: "fur" EXACT []
is_a: UO:1010016 ! furlong based unit

[Term]
id: UO:0010017
name: mile
comment: "A length unit which is equal to 1,609.344 metres, or 8 furlongs." [Wikipedia:Wikpiedia]
synonym: "mi" EXACT []
is_a: UO:1010017 ! mile based unit

[Term]
id: UO:0010018
name: league
comment: "A length unit which is equal to 3 miles, or 4,828.032 metres" [Wikipedia:Wikpiedia]
synonym: "lea" EXACT []
is_a: UO:1010018 ! league based unit

[Term]
id: UO:0010019
name: maritime length unit
comment: "A maritime length unit is one used primarily at sea." [Wikipedia:Wikpiedia]
is_a: UO:1010019 ! maritime length unit based unit

[Term]
id: UO:0010020
name: fathom
comment: "A maritime length unit which is equal to 6.08 feet, or 1.853184 metres" [Wikipedia:Wikpiedia]
synonym: "ftm" EXACT []
is_a: UO:1010020 ! fathom based unit

[Term]
id: UO:0010021
name: cable
comment: "A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres" [Wikipedia:Wikpiedia]
is_a: UO:1010021 ! cable based unit

[Term]
id: UO:0010022
name: nautical mile
comment: "A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,853.184 metres" [Wikipedia:Wikpiedia]
is_a: UO:1010022 ! nautical mile based unit

[Term]
id: UO:0010031
name: grain
comment: "An imperial mass unit which is equivalent to 64.798,91 milligrams." [Wikipedia:Wikipedia]
synonym: "gr" EXACT []
is_a: UO:1010031 ! grain based unit

[Term]
id: UO:0010032
name: drachm
comment: "An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound." [Wikipedia:Wikipedia]
synonym: "dr" EXACT []
is_a: UO:1010032 ! drachm based unit

[Term]
id: UO:0010033
name: ounce
comment: "An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound." [Wikipedia:Wikipedia]
synonym: "oz" EXACT []
is_a: UO:1010033 ! ounce based unit

[Term]
id: UO:0010034
name: pound
comment: "An imperial mass unit which is equivalent to 453.592,37 grams." [Wikipedia:Wikipedia]
synonym: "lb" EXACT []
is_a: UO:1010034 ! pound based unit

[Term]
id: UO:0010035
name: stone
comment: "An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds." [Wikipedia:Wikipedia]
synonym: "st" EXACT []
is_a: UO:1010035 ! stone based unit

[Term]
id: UO:0010036
name: quarter
comment: "An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds." [Wikipedia:Wikipedia]
synonym: "qr" EXACT []
synonym: "qtr" EXACT []
is_a: UO:1010036 ! quarter based unit

[Term]
id: UO:0010037
name: hundredweight
comment: "An imperial mass unit which is equivalent to 50.802,345,44 kilograms, 112 pounds, or 8 stone." [Wikipedia:Wikipedia]
synonym: "cwt" EXACT []
is_a: UO:1010037 ! hundredweight based unit

[Term]
id: UO:0010038
name: ton
comment: "An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds." [Wikipedia:Wikipedia]
synonym: "t" EXACT []
is_a: UO:1010038 ! ton based unit

[Term]
id: UO:0010066
name: kilometer
comment: "A length unit which is equal to one thousand meters." [UOB:LKSR]
synonym: "kilometre" EXACT []
synonym: "km" EXACT []
is_a: UO:1000008 ! meter based unit

[Term]
id: UO:0010080
name: titer
comment: A concentration unit which denotes the minimum amount of a substance in a solution that still yields a positive reading, as determined by serial dilution.
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1000008
name: meter based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1000019
name: angstrom based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1000021
name: gram based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1000062
name: molar based unit
is_a: UO:0000061 ! unit of molarity

[Term]
id: UO:1000068
name: molal based unit
is_a: UO:0000067 ! unit of molality

[Term]
id: UO:1000075
name: normal based unit
is_a: UO:0000074 ! unit of normality

[Term]
id: UO:1000076
name: mole fraction based unit
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1000088
name: gram per mole based unit
is_a: UO:0000055 ! molar mass unit

[Term]
id: UO:1000163
name: mass percentage based unit
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1000164
name: mass volume percentage based unit
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1000165
name: volume percentage based unit
is_a: UO:0000205 ! volume per unit volume

[Term]
id: UO:1000178
name: unit per milliliter based unit
is_a: UO:0000177 ! unit per volume unit

[Term]
id: UO:1000179
name: unit per liter based unit
is_a: UO:0000177 ! unit per volume unit

[Term]
id: UO:1000180
name: mass per unit volume based unit
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1000196
name: pH based unit
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1000201
name: cells per milliliter based unit
is_a: UO:0000200 ! cell concentration unit

[Term]
id: UO:1000203
name: katal per cubic meter based unit
is_a: UO:0000202 ! catalytic (activity) concentration unit

[Term]
id: UO:1000204
name: katal per liter based unit
is_a: UO:0000202 ! catalytic (activity) concentration unit

[Term]
id: UO:1000213
name: colony forming unit per milliliter based unit
is_a: UO:0000212 ! colony forming unit per volume

[Term]
id: UO:1000215
name: plaque forming unit per milliliter based unit
is_a: UO:0000214 ! plaque forming unit per volume

[Term]
id: UO:1000221
name: dalton based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1000310
name: dosage unit based unit
is_a: UO:0000051 ! concentration unit

[Term]
id: UO:1010011
name: inch based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010012
name: thou based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010013
name: foot based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010014
name: yard based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010015
name: chain based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010016
name: furlong based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010017
name: mile based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010018
name: league based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010019
name: maritime length unit based unit
is_a: UO:0000001 ! length unit

[Term]
id: UO:1010020
name: fathom based unit
is_a: UO:0010019 ! maritime length unit

[Term]
id: UO:1010021
name: cable based unit
is_a: UO:0010019 ! maritime length unit

[Term]
id: UO:1010022
name: nautical mile based unit
is_a: UO:0010019 ! maritime length unit

[Term]
id: UO:1010031
name: grain based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010032
name: drachm based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010033
name: ounce based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010034
name: pound based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010035
name: stone based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010036
name: quarter based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010037
name: hundredweight based unit
is_a: UO:0000002 ! mass unit

[Term]
id: UO:1010038
name: ton based unit
is_a: UO:0000002 ! mass unit

[Term]
id: VIBSO:0000000
name: vibrational spectrometer configuration specification
def: "A setting datum that specifies the needed settings of a spectrometer used in vibrational spectroscopy." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/39

[Term]
id: VIBSO:0000001
name: Raman spectrometer configuration
def: "A device setting that represents the measured or set physical qualities which make up the configuration state of a Raman spectrometer at the time of a measurement (e.g. operating temperature, exitation wavelength, groove density, ...)." []
is_a: OBI:0000654 ! device setting
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000112 "The set of meassured configuration characteristics of a Raman spectrometer, like the operating temperature of a Raman spectrometer." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/47

[Term]
id: VIBSO:0000002
name: integration time setting
def: "A setting datum that specifies the length of time that a photo detector is allowed to collect photons before passing the accumulated charge to the A/D converter for processing. The minimum integration time is the shortest integration time the device supports and is dependent on how fast the detector can read out all of the pixel information. Integration time should not be confused with data transfer speed." [] {dce:source="i"}
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: IAO:0000118 "integration period setting" xsd:string
property_value: IAO:0000118 "integration time" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/40

[Term]
id: VIBSO:0000003
name: preamplifier gain setting
def: "A setting datum that specifies the preamplifier gain in CCD sensors." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/41

[Term]
id: VIBSO:0000004
name: horizontal shift speed setting
def: "A setting datum that specifies the horizontal shift speed in CCD sensors." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/42

[Term]
id: VIBSO:0000005
name: vertical shift speed setting
def: "A setting datum that specifies the vertical shift speed in CCD sensors." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/42

[Term]
id: VIBSO:0000006
name: device temperature setting
def: "A setting datum that specifies the operating temperature of a device." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/43

[Term]
id: VIBSO:0000007
name: number of accumulations
def: "A setting datum that specifies the desired number of measurements a spectrometer has to perform on the same location, without position change to produce an usable spectrum. This setting datum is relevant to improve the signal to noise ratio." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class might better be defined in a more general device ontology." xsd:string
property_value: IAO:0000118 "number of acquisitions" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/30

[Term]
id: VIBSO:0000008
name: CCD sensor binning read mode setting
def: "A setting datum that specifies the binning read mode of a device with a CCD sensor." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/46

[Term]
id: VIBSO:0000009
name: groove density
def: "A physical quality inhering in a diffraction grating device by virtue of the device's function to diffract light. This quality specifically depends on the number of grooves per area of the grating device and is usually expressed in grooves per millimeter." [] {dce:source="wikipedia:Diffraction_grating", dce:source=":~:text=The%20groove%20density%20(or%20groove,of%20the%20operational%20wavelength%20range"}
is_a: PATO:0001018 ! physical quality
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "temp class until NTR in PATO has been accepted and merged (https://github.com/pato-ontology/pato/issues/541)" xsd:string
property_value: IAO:0000118 "groove frequency" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/45

[Term]
id: VIBSO:0000010
name: groove density setting
def: "A setting datum that specifies the number of grooves in a diffraction grating device." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: IAO:0000118 "grating" xsd:string
property_value: IAO:0000118 "grating setting" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/45

[Term]
id: VIBSO:0000011
name: diffraction grating
def: "A device that is an optical component with a periodic structure that diffracts light into several beams travelling in different directions (i.e. different diffraction angles)" [] {dce:source="wikipedia:Diffraction_grating"}
is_a: OBI:0000968 ! device
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/49

[Term]
id: VIBSO:0000012
name: deprecated_excitation wavelength
def: "A physical quality of the light source that is used used to excite a system to a higher energy state." []
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class is not needed, as PATO:wavelength is sufficient, if this quality of a Raman device is really needed." xsd:string
property_value: IAO:0000231 IAO:0000103
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/48
is_obsolete: true
replaced_by: PATO:0001242

[Term]
id: VIBSO:0000013
name: excitation wavelength setting
def: "A setting datum that specifies the wavelength of an electromagnetic radiation source (e.g. a laser) which has the function to excite the energy state of a target material." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/48

[Term]
id: VIBSO:0000014
name: objective magnification factor setting
def: "A setting datum that specifies the magnification factor of the objective collecting the scattered light." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "100x" xsd:string
property_value: IAO:0000118 "magnification" xsd:string
property_value: IAO:0000118 "magnification setting" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/24%20

[Term]
id: VIBSO:0000015
name: spectral window range maximum
def: "A setting datum that specifies the upper boundary of the spectral window range utilized during the acquisition of spectroscopic data." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000112 "210 cm^-1" xsd:string
property_value: IAO:0000116 "It needs to be determined, if this is also part of another kind of spectrum, such as a vibrational spectrum in general. We also need to decide, if we need to also model the terms window size and window center, from which this term is derived." xsd:string
property_value: IAO:0000118 "acquisition band maximum" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/31

[Term]
id: VIBSO:0000016
name: spectral window range minimum
def: "A setting datum that specifies the lower boundary of the spectral window range utilized during the acquisition of spectroscopic data." []
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000112 "1960 cm^-1" xsd:string
property_value: IAO:0000116 "It needs to be determined, if this is also part of another kind of spectrum, such as a vibrational spectrum in general. We also need to decide, if we need to also model the terms window size and window center, from which this term is derived." xsd:string
property_value: IAO:0000118 "acquisition band minimum" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/31

[Term]
id: VIBSO:0000017
name: incident light power datum
def: "A scalar measurement datum that is the result of measuring the incoming light power before the sample holder and which depends on the laser power and on the dispersive behaviour of the filters and optical components." []
comment: The incident power is an elementary measurement parameter allowing to compare among measurements conducted with the same setup. A thorough investigation of the effects of light irradiation onto the sample depends on the local irradiance (power per unit area) and requires deeper knowledge of the irradiation geometry, e.g. width, depth and shape of the focal spot.
is_a: IAO:0000032 ! scalar measurement datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: IAO:0000112 "200 mW" xsd:string
property_value: IAO:0000118 "excitation light power" xsd:string
property_value: IAO:0000118 "light power on the sample" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/29

[Term]
id: VIBSO:0000018
name: region of interest
def: "A site that refers to a user-defined portion of the image area in which data will be acquired. The remainder of the image area will be discarded." [] {dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q57"}
is_a: BFO:0000029 ! site
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000116 "See also https://w3id.org/reproduceme#ROI & http://purl.obolibrary.org/obo/NCIT_C85402" xsd:string
property_value: IAO:0000118 "imaging region of interest" xsd:string
property_value: IAO:0000118 "ROI" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000019
name: region of interest width
def: "A setting datum that specifies the width (length in the X direction) of the region of interest." []
comment: region of interest width = (point distance X) * (number of measurements X)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "1 mm" xsd:string
property_value: IAO:0000118 "ROI horizontal length" xsd:string
property_value: IAO:0000118 "ROI width" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000020
name: region of interest breadth
def: "A setting datum that specifies the height (length in the Y direction) of the region of interest." []
comment: region of interest breadth = (point distance Y) * (number of measurements Y)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "0.5 mm" xsd:string
property_value: IAO:0000118 "ROI breadth" xsd:string
property_value: IAO:0000118 "ROI lateral length" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000021
name: region of interest depth
def: "A setting datum that specifies the depth (length in the Z direction) of the region of interest." []
comment: region of interest depth = (point distance Z) * (number of measurements Z)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "0.1 mm" xsd:string
property_value: IAO:0000118 "ROI depth" xsd:string
property_value: IAO:0000118 "ROI vertical length" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000022
name: point distance X
def: "A setting datum that specifies the equal distance which the incident light beam will be moved laterally in the X direction on a given sample within the region of interest after each measurement, when performing a spatially resolved spectroscopy." []
comment: point distance X = (region of interest width) / (number of measurements X)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "20 µm" xsd:string
property_value: IAO:0000118 "sampling pace in the X direction" xsd:string
property_value: IAO:0000118 "sampling step in the X direction" xsd:string
property_value: IAO:0000118 "voxel distance in the X direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000023
name: point distance Y
def: "A setting datum that specifies the equal distance which the incident light beam will be moved laterally in the Y direction on a given sample within the region of interest after each measurement, when performing a spatially resolved spectroscopy." []
comment: point distance Y = (region of interest breadth) / (number of measurements Y)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "10 µm" xsd:string
property_value: IAO:0000118 "sampling pace in the Y direction" xsd:string
property_value: IAO:0000118 "sampling step in the Y direction" xsd:string
property_value: IAO:0000118 "voxel distance in the Y direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000024
name: point distance Z
def: "A setting datum that specifies the equal distance which the incident light beam will moved along the focal axis within the region of interest, when performing a spatially resolved spectroscopy." []
comment: point distance Z = (region of interest depth) / (number of measurements Z)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "10 µm" xsd:string
property_value: IAO:0000118 "axial mapping distance" xsd:string
property_value: IAO:0000118 "sampling pace in the Z direction" xsd:string
property_value: IAO:0000118 "sampling step in the Z direction" xsd:string
property_value: IAO:0000118 "vertical mapping distance" xsd:string
property_value: IAO:0000118 "voxel distance in the Z direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000025
name: number of measurements X
def: "A setting datum that specifies how many equally configured measurements of a sample are to be performed along the X-axis of a certain region of interest. Together with the point distance X, this setting defines the region of interest width." []
comment: number of measurements X = (region of interest width) / (point distance X)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "50" xsd:string
property_value: IAO:0000118 "number of points in the X direction" xsd:string
property_value: IAO:0000118 "number of points per line" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000026
name: number of measurements Y
def: "A setting datum that specifies how many equally configured measurements of a sample are to be performed along the Y-axis of a certain region of interest. Together with the point distance Y, this setting defines the region of interest breadth." []
comment: number of measurements = (region of interest breadth) / (point distance Y)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "100" xsd:string
property_value: IAO:0000118 "number of lines per layer" xsd:string
property_value: IAO:0000118 "number of points in the Y direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000027
name: number of measurements Z
def: "A setting datum that specifies how many equally configured measurements of a sample are to be performed in the vertical direction (on the Z-axis) of a certain region of interest. Together with the focal point distance, this setting defines the region of interest depth." []
comment: number of measurements Z = (region of interest depth) / (point distance Z)
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3956
property_value: IAO:0000112 "10" xsd:string
property_value: IAO:0000118 "number of layers per acquisition" xsd:string
property_value: IAO:0000118 "number of points in the Z direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000028
name: Raman raw data
def: "A measurement datum that is obtained from a calibrated and ready Raman spectrometer and prior to be submitted to any mathematical modification. The only corrections on the data shall be the one associated with the spectrometer. The data will assign pixels readouts with nm as per calibration of the spectrometer and a.u. as intensity readout but will not be corrected in relationship of the incident monochromatic beam." [] {dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q64"}
is_a: IAO:0000109 ! measurement datum
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000118 "raw Raman data" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/77

[Term]
id: VIBSO:0000029
name: lens numerical aperture
def: "A setting datum that, as a dimensionless number, represents the quality which characterizes the range of angles over which an optical system can accept or emit light [dc:source wikidata:Numerical_aperture]. It gets calculated by the sine of one half of the vertex angle of the largest cone of meridional rays that can enter or leave an optical system or element, multiplied by the refractive index of the medium in which the cone is located." [] {dce:source="wikipedia:Numerical_aperture", dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q385"}
is_a: IAO:0000140 ! setting datum
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "The light was focused onto the embedded sample using a 100× objective with a numerical aperture of 0.9, resulting in a diffraction-limited in-plane laser spot size of <1 μm." xsd:string
property_value: IAO:0000116 "possible equivalents in other terminologies: http://purl.obolibrary.org/obo/NCIT_C181921 & https://w3id.org/reproduceme#LensNA" xsd:string
property_value: IAO:0000118 "numerical aperture" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/76

[Term]
id: VIBSO:0000030
name: primary Raman data
def: "A data item that is obtained by processing raw Raman data." []
is_a: IAO:0000027 ! data item
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/132

[Term]
id: VIBSO:0000031
name: resolution
def: "A physical quality of a measurement device that expresses (realizes) the device's capacity to distinguish between two distinct but closely related measurements of the same physical quality or type, often quantified as the smallest detectable difference (resolution interval) between measured values." []
is_a: PATO:0001018 ! physical quality
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000032
name: resolution interval
def: "A data item that quantifies a resolution, by representing the minimum measurable difference between two measurements of the same physical quality or type, such that the measurements can be distinguished as different." []
is_a: IAO:0000027 ! data item
relationship: IAO:0000136 VIBSO:0000031 ! is about resolution
relationship: OBI:0001938 OBI:0001933 ! has value specification value specification
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000033
name: resolution power
def: "A ratio that quantifies the ability of a measurement device to distinguish between small differences in measurement values, expressed as the ratio between a typical measurement datum and the corresponding resolution interval." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: STATO:0000184 ! ratio
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000034
name: spatial resolution interval
def: "A resolution interval that quantifies the minimum distance between two points such that they can be considered two separate points in a given microscope under specific experimental parameters." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000035
name: lateral resolution interval as angle
def: "A spatial resolution interval that quantifies the minimum angular separation between two points on a plane orthogonal to the light ray, expressed as an angle centered in the lens (Formula: δθ = 1.22 * λ / D)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δθ = 1.22cdotλ/D$
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000036
name: lateral resolution interval as length
def: "A spatial resolution interval that quantifies the minimum linear separation between two points on a plane orthogonal to the light ray, expressed as the distance from the center of the optical spot (Formula: δr = 0.61 * λ / NA)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δr = 0.61cdotλ/NA$ (Abbe formula, derived from the Rayleigh criterion with the Kirchhoff, Debye and paraxial approximation) $= 1.22 λcdot(f/sharp)$
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000037
name: axial resolution interval as length
def: "A spatial resolution interval that quantifies the minimum measurable separation between two points along the axis of propagation of the light ray, expressed as a linear distance (Formula: δz = 2 ⋅ n ⋅ λ / NA²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δz = 2cdot ncdotλ/NA²$
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000038
name: spectral resolution interval
def: "A resolution interval that quantifies the minimum separation between two narrow peaks in a spectrum such that they can be distinguished as two separate peaks." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000039
name: spectral resolution interval as wavelength
def: "A spectral resolution interval that quantifies the minimum separation between two wavelengths such that they can be distinguished as different (Formula: δλ = λ / (n * N))." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5", dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q22", dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q200"}
comment: $δλ = λ / (ncdot N) = RFcdot Δλcdot WS / n$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000040
name: spectral resolution interval as wavenumber
def: "A spectral resolution interval that quantifies the minimum separation between two wavenumbers such that they can be distinguished as different (Formula: δν~ = δλ / λ²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δbarν$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000041
name: spectral resolution interval as frequency
def: "A spectral resolution interval that quantifies the minimum separation between two frequencies such that they can be distinguished as different (Formula: δν = c * δν~ = c * δλ / λ²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δν$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000042
name: spectral resolution interval as energy
def: "A spectral resolution interval that quantifies the minimum separation between two energy levels such that they can be distinguished as different (Formula: δE = h * δν = h * c * δν~ = h * c * δλ / λ²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δE$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000043
name: radiometric resolution interval
def: "A resolution interval that quantifies the minimum difference in irradiated energy, often coded as gray level in a grayscale or look-up-table (LUT)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000044
name: temporal resolution interval
def: "A resolution interval that quantifies the temporal separation between two measurements or frames, often expressed as the inverse of the frame rate. In techniques where temporal resolution is not directly derived from frame rate, it quantifies the minimum temporal interval between two resolvable events." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: In techniques where the temporal resolution is not given directly from a temporal distance between subsequent measurements (e.g., pulsed time resolved pump-probe techniques), it can be used more properly as defined above
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000045
name: diffraction limit
def: "A spatial resolution interval that quantifies the theoretical maximum spatial resolution achievable by an optical system, constrained by the diffraction of light." [] {dce:source="d25805417e256"}
comment: The Abbe diffraction limit, is defined as λ/ (2 NA) in which λ is the wavelength of the illuminating light and NA is the numerical aperture.
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0003017
name: spectral window center
def: "A setting datum that specifies the middle wavelength/wavenumber of a spectrum, equal to the average of the maximum and minimum of the spectral window range utilized during the acquisition of spectroscopic data. It corresponds to the optimal alignment or centering of the spectrometer to ensure that the most relevant spectral features are captured effectively within the defined acquisition range." []
is_a: IAO:0000140 ! setting datum
is_a: OBI:0000674 ! center value
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "560 cm^-1" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/88

[Typedef]
id: BFO:0000050
name: part of
def: "a core relation that holds between a part and its whole" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
property_value: IAO:0000111 "is part of" xsd:string
property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string
property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string
property_value: IAO:0000118 "part_of" xsd:string
property_value: RO:0001900 RO:0001901
property_value: RO:0040042 BFO:0000002
property_value: RO:0040042 BFO:0000003
property_value: RO:0040042 BFO:0000004
property_value: RO:0040042 BFO:0000017
property_value: RO:0040042 BFO:0000019
property_value: RO:0040042 BFO:0000020
property_value: RO:0040042 BFO:0000031
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf
property_value: seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of" xsd:string
property_value: seeAlso "https://wiki.geneontology.org/Part_of" xsd:anyURI
is_transitive: true
is_a: RO:0002131 ! overlaps
inverse_of: BFO:0000051 ! has part

[Typedef]
id: BFO:0000051
name: has part
def: "a core relation that holds between a whole and its part" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
property_value: IAO:0000111 "has part" xsd:string
property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string
property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string
property_value: IAO:0000118 "has_part" xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
is_a: RO:0002131 ! overlaps

[Typedef]
id: BFO:0000054
name: realized in
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
property_value: IAO:0000111 "realized in" xsd:string
property_value: IAO:0000112 "this disease is realized in this disease course" xsd:string
property_value: IAO:0000112 "this fragility is realized in this shattering" xsd:string
property_value: IAO:0000112 "this investigator role is realized in this investigation" xsd:string
property_value: IAO:0000118 "is realized by" xsd:string
property_value: IAO:0000118 "realized_in" xsd:string
property_value: IAO:0000600 "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
domain: BFO:0000017 ! realizable entity
range: BFO:0000015 ! process
inverse_of: BFO:0000055 ! realizes

[Typedef]
id: BFO:0000055
name: realizes
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
property_value: IAO:0000111 "realizes" xsd:string
property_value: IAO:0000112 "this disease course realizes this disease" xsd:string
property_value: IAO:0000112 "this investigation realizes this investigator role" xsd:string
property_value: IAO:0000112 "this shattering realizes this fragility" xsd:string
property_value: IAO:0000600 "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/iao.owl
domain: BFO:0000015 ! process
range: BFO:0000017 ! realizable entity

[Typedef]
id: IAO:0000039
name: has measurement unit label
range: IAO:0000003 ! measurement unit label
is_functional: true
is_a: BFO:0000051 ! has part

[Typedef]
id: IAO:0000136
name: is about
def: "A (currently) primitive relation that relates an information artifact to an entity." []
property_value: IAO:0000112 "This document is about information artifacts and their representations" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of \"mentions\" relation. Weaken the is_about relationship to be primitive. \n\nWe will try to build it back up by elaborating the various subproperties that are more precisely defined.\n\nSome currently missing phenomena that should be considered \"about\" are predications - \"The only person who knows the answer is sitting beside me\" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic." xsd:string
property_value: IAO:0000117 "person:Alan Ruttenberg" xsd:string
property_value: IAO:0000119 "Smith, Ceusters, Ruttenberg, 2000 years of philosophy" xsd:string
domain: IAO:0000030 ! information content entity

[Typedef]
id: IAO:0000219
name: denotes
def: "A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically" []
property_value: IAO:0000112 "A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance \"Alan\" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between \"Alan\" and the person that is being named." xsd:string
property_value: IAO:0000116 "2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.\ng denotes r =def \nr is a portion of reality\nthere is some c that is a concretization of g \nevery c that is a concretization of g specifically denotes r" xsd:string
property_value: IAO:0000117 "person:Alan Ruttenberg" xsd:string
property_value: IAO:0000119 "Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan" xsd:string
domain: IAO:0000030 ! information content entity
range: BFO:0000001 ! entity
is_a: IAO:0000136 ! is about
inverse_of: IAO:0000235 ! denoted by

[Typedef]
id: IAO:0000221
name: is quality measurement of
def: "m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q" []
property_value: IAO:0000116 "8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later" xsd:string
property_value: IAO:0000116 "From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important]\n\nThis one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it \"measuring\" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.\n\nWerner suggests a solution based on \"Magnitudes\" a proposal for which we are awaiting details.\n--\nFrom the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009]\n\nunit of measure is a quality, e.g. the length of a ruler.\n\n[We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label]\n\n[Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory]\n\na represents b means either a denotes b or a describes\n\ndescribe:\na describes b means a is about b and a allows an inference of at least one quality of b\n\nWe have had a long discussion about denotes versus describes." xsd:string
property_value: IAO:0000116 "From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully.\n\na is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality." xsd:string
property_value: IAO:0000116 "From the second meeting on IAO:\n\nAn attempt at defining assay using Barry's \"reliability\" wording\n\nassay:\nprocess and has_input some material entity\nand has_output some information content entity \nand which is such that instances of this process type reliably generate \noutputs that describes the input." xsd:string
property_value: IAO:0000116 "This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it \"measuring\" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.\n\nWerner suggests a solution based on \"Magnitudes\" a proposal for which we are awaiting details." xsd:string
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
domain: IAO:0000109 ! measurement datum
range: BFO:0000019 ! quality
is_a: IAO:0000136 ! is about
inverse_of: IAO:0000417 ! is quality measured as

[Typedef]
id: IAO:0000235
name: denoted by
def: "inverse of the relation 'denotes'" []
property_value: IAO:0000117 "Person: Jie Zheng, Chris Stoeckert, Mike Conlon" xsd:string
property_value: IAO:0000233 https://github.com/information-artifact-ontology/IAO/issues/206
domain: BFO:0000001 ! entity
range: IAO:0000030 ! information content entity

[Typedef]
id: IAO:0000417
name: is quality measured as
def: "inverse of the relation of is quality measurement of" []
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000116 "2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship" xsd:string
property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string

[Typedef]
id: OBI:0000124
name: is_supported_by_data
def: "The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process" []
property_value: IAO:0000111 "is_supported_by_data" xsd:string
property_value: IAO:0000112 "The relation between the conclusion \"Gene tpbA is involved in EPS production\" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "OBI" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
property_value: IAO:0000119 "Philly 2011 workshop" xsd:string
range: IAO:0000027 ! data item

[Typedef]
id: OBI:0000293
name: has_specified_input
def: "The inverse property of is_specified_input_of" []
property_value: IAO:0000111 "has_specified_input" xsd:string
property_value: IAO:0000111 "has_specified_input" xsd:string
property_value: IAO:0000112 "see is_input_of example_of_usage" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Larry Hunter" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Coutot" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl
domain: OBI:0000011 ! planned process
is_a: RO:0000057 ! has participant
inverse_of: OBI:0000295 ! is_specified_input_of

[Typedef]
id: OBI:0000295
name: is_specified_input_of
def: "A relation between a planned process and a continuant participating in that process that is not created during  the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of." []
property_value: IAO:0000111 "is_specified_input_of" xsd:string
property_value: IAO:0000112 "some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON:Bjoern Peters" xsd:string
range: OBI:0000011 ! planned process
is_a: RO:0000056 ! participates in

[Typedef]
id: OBI:0000299
name: has_specified_output
def: "The inverse property of is_specified_output_of" []
property_value: IAO:0000111 "has_specified_output" xsd:string
property_value: IAO:0000111 "has_specified_output" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Larry Hunter" xsd:string
property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl
domain: OBI:0000011 ! planned process
is_a: RO:0000057 ! has participant
inverse_of: OBI:0000312 ! is_specified_output_of

[Typedef]
id: OBI:0000312
name: is_specified_output_of
def: "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of." []
property_value: IAO:0000111 "is_specified_output_of" xsd:string
property_value: IAO:0000111 "is_specified_output_of" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON:Bjoern Peters" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl
range: OBI:0000011 ! planned process
is_a: RO:0000056 ! participates in

[Typedef]
id: OBI:0000417
name: achieves_planned_objective
def: "This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process." []
property_value: IAO:0000111 "achieves_planned_objective" xsd:string
property_value: IAO:0000112 "A cell sorting process achieves the objective specification 'material separation objective'" xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "BP, AR, PPPB branch" xsd:string
property_value: IAO:0000119 "PPPB branch derived" xsd:string
property_value: IAO:0000232 "modified according to email thread from 1/23/09 in accordince with DT and PPPB branch" xsd:string
domain: OBI:0000011 ! planned process
range: IAO:0000005 ! objective specification
inverse_of: OBI:0000833 ! objective_achieved_by

[Typedef]
id: OBI:0000833
name: objective_achieved_by
def: "This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process." []
property_value: IAO:0000111 "objective_achieved_by" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "OBI" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
domain: IAO:0000005 ! objective specification
range: OBI:0000011 ! planned process

[Typedef]
id: OBI:0000846
name: is member of organization
def: "Relating a legal person or organization to an organization in the case where the legal person or organization has a role as member of the organization." []
property_value: IAO:0000111 "is member of organization" xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000116 "2009/10/01 Alan Ruttenberg. Barry prefers generic is-member-of. Question of what the range should be. For now organization. Is organization a population? Would the same relation be used to record members of a population" xsd:string
property_value: IAO:0000116 "JZ: Discussed on May 7, 2012 OBI dev call. Bjoern points out that we need to allow for organizations to be members of organizations. And agreed by the other OBI developers. So, human and organization were specified in 'Domains'. The textual definition was updated based on it." xsd:string
property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "Person:Helen Parkinson" xsd:string
property_value: IAO:0000119 "Person:Alan Ruttenberg" xsd:string
property_value: IAO:0000119 "Person:Helen Parkinson" xsd:string
property_value: IAO:0000232 "2009/09/28 Alan Ruttenberg. Fucoidan-use-case" xsd:string
range: OBI:0000245 ! organization
inverse_of: OBI:0001688 ! has organization member

[Typedef]
id: OBI:0001688
name: has organization member
def: "Relating an organization to a legal person or organization." []
property_value: IAO:0000111 "has organization member" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000116 "See tracker:\nhttps://sourceforge.net/tracker/index.php?func=detail&aid=3512902&group_id=177891&atid=886178" xsd:string
property_value: IAO:0000117 "Person: Jie Zheng" xsd:string
domain: OBI:0000245 ! organization

[Typedef]
id: OBI:0001927
name: specifies value of
def: "A relation between a value specification and an entity which the specification is about." []
property_value: IAO:0000111 "specifies value of" xsd:string
property_value: IAO:0000114 IAO:0000123
domain: OBI:0001933 ! value specification
is_a: IAO:0000136 ! is about

[Typedef]
id: OBI:0001938
name: has value specification
def: "A relation between an information content entity and a value specification that specifies its value." []
property_value: IAO:0000111 "has value specification" xsd:string
property_value: IAO:0000114 IAO:0000120
property_value: IAO:0000117 "PERSON: James A. Overton" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
domain: IAO:0000030 ! information content entity
range: OBI:0001933 ! value specification
is_a: BFO:0000051 ! has part

[Typedef]
id: OBI:0001950
name: has performer
def: "A relation between a planned process and a continuant where the continuant can be a person, organization or device (such as a robot controlled by software workflow management system) that performs the planned process." []
comment: The 'has performer' relation covers the need to report on who performed a planned processed. It has to cover processes done by People or Devices (such as a robot controlled by software  WF management system).
property_value: IAO:0000111 "has performer" xsd:string
property_value: IAO:0000114 IAO:0000428
property_value: IAO:0000117 "OBI" xsd:string
property_value: IAO:0000119 "OBI" xsd:string
domain: OBI:0000011 ! planned process
is_a: RO:0000057 ! has participant

[Typedef]
id: RO:0000052
name: characteristic of
name: inheres in
def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." []
def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" []
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
property_value: IAO:0000111 "inheres in" xsd:string
property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string
property_value: IAO:0000112 "this fragility is a characteristic of this vase" xsd:string
property_value: IAO:0000112 "this red color inheres in this apple" xsd:string
property_value: IAO:0000112 "this red color is a characteristic of this apple" xsd:string
property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string
property_value: IAO:0000118 "inheres_in" xsd:string
property_value: RO:0001900 RO:0001901
is_functional: true
is_a: RO:0002314 ! characteristic of part of
inverse_of: RO:0000053 ! bearer of

[Typedef]
id: RO:0000053
name: bearer of
name: has characteristic
def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" []
def: "Inverse of characteristic_of" []
property_value: IAO:0000111 "bearer of" xsd:string
property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string
property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string
property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string
property_value: IAO:0000118 "bearer_of" xsd:string
property_value: IAO:0000118 "is bearer of" xsd:string
property_value: RO:0001900 RO:0001901
range: BFO:0000020 ! specifically dependent continuant
is_inverse_functional: true

[Typedef]
id: RO:0000056
name: participates in
def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" []
property_value: IAO:0000111 "participates in" xsd:string
property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string
property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string
property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string
property_value: IAO:0000118 "participates_in" xsd:string
domain: BFO:0000002 ! continuant
range: BFO:0000003 ! occurrent
inverse_of: RO:0000057 ! has participant

[Typedef]
id: RO:0000057
name: has participant
def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" []
property_value: dce:source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" xsd:string
property_value: dcterms:source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" xsd:string
property_value: IAO:0000111 "has participant" xsd:string
property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string
property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string
property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string
property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string
property_value: IAO:0000118 "has_participant" xsd:string
domain: BFO:0000003 ! occurrent
range: BFO:0000002 ! continuant
holds_over_chain: BFO:0000051 RO:0000057

[Typedef]
id: RO:0000058
name: is concretized as
def: "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants." []
property_value: IAO:0000112 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)." xsd:string
property_value: IAO:0000112 "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)." xsd:string
domain: BFO:0000031 ! generically dependent continuant
range: BFO:0000020 ! specifically dependent continuant
inverse_of: RO:0000059 ! concretizes

[Typedef]
id: RO:0000059
name: concretizes
def: "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant." []
property_value: IAO:0000112 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)." xsd:string
property_value: IAO:0000112 "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)." xsd:string
domain: BFO:0000020 ! specifically dependent continuant
range: BFO:0000031 ! generically dependent continuant

[Typedef]
id: RO:0000079
name: function of
def: "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" []
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
property_value: IAO:0000112 "this catalysis function is a function of this enzyme" xsd:string
property_value: IAO:0000116 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." xsd:string
property_value: IAO:0000118 "function_of" xsd:string
property_value: IAO:0000118 "is function of" xsd:string
domain: BFO:0000034 ! function
is_a: RO:0000052 ! inheres in
inverse_of: RO:0000085 ! has function

[Typedef]
id: RO:0000080
name: quality of
def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" []
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string
property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string
property_value: IAO:0000118 "is quality of" xsd:string
property_value: IAO:0000118 "quality_of" xsd:string
is_a: RO:0000052 ! inheres in
inverse_of: RO:0000086 ! has quality

[Typedef]
id: RO:0000081
name: role of
def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" []
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
property_value: IAO:0000112 "this investigator role is a role of this person" xsd:string
property_value: IAO:0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string
property_value: IAO:0000118 "is role of" xsd:string
property_value: IAO:0000118 "role_of" xsd:string
is_a: RO:0000052 ! inheres in
inverse_of: RO:0000087 ! has role

[Typedef]
id: RO:0000085
name: has function
def: "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)" xsd:string
property_value: IAO:0000116 "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists." xsd:string
property_value: IAO:0000118 "has_function" xsd:string
domain: BFO:0000004 ! independent continuant
range: BFO:0000034 ! function
is_a: RO:0000053 ! bearer of

[Typedef]
id: RO:0000086
name: has quality
def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this apple has quality this red color" xsd:string
property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string
property_value: IAO:0000118 "has_quality" xsd:string
range: BFO:0000019 ! quality
is_a: RO:0000053 ! bearer of

[Typedef]
id: RO:0000087
name: has role
def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string
property_value: IAO:0000116 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string
property_value: IAO:0000118 "has_role" xsd:string
domain: BFO:0000004 ! independent continuant
range: BFO:0000023 ! role
is_a: RO:0000053 ! bearer of

[Typedef]
id: RO:0000091
name: has disposition
def: "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence" []
domain: BFO:0000004 ! independent continuant
range: BFO:0000016 ! disposition
is_a: RO:0000053 ! bearer of
inverse_of: RO:0000092 ! disposition of

[Typedef]
id: RO:0000092
name: disposition of
def: "inverse of has disposition" []
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
subset: RO:0002259
is_a: RO:0000052 ! inheres in

[Typedef]
id: RO:0002131
name: overlaps
def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_gocam
subset: ro-eco
property_value: IAO:0000114 IAO:0000125
property_value: RO:0001900 RO:0001901
holds_over_chain: BFO:0000050 BFO:0000050
holds_over_chain: BFO:0000051 BFO:0000050 {RO:0002582="true"}
holds_over_chain: BFO:0000051 RO:0002131
is_symmetric: true
is_a: RO:0002323 ! mereotopologically related to
transitive_over: BFO:0000050 ! part of
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" []

[Typedef]
id: RO:0002314
name: characteristic of part of
def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." []
property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000118 "inheres in part of" xsd:string
property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205
property_value: RO:0001900 RO:0001901
property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/
holds_over_chain: RO:0000052 BFO:0000050 {RO:0002582="true"}
is_a: RO:0002502 ! depends on
transitive_over: BFO:0000050 ! part of

[Typedef]
id: RO:0002323
name: mereotopologically related to
def: "A mereological relationship or a topological relationship" []
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string
property_value: RO:0001900 RO:0001901

[Typedef]
id: RO:0002350
name: member of
def: "is member of is a mereological relation between a item and a collection." []
property_value: IAO:0000112 "An organism that is a member of a population of organisms" xsd:string
property_value: IAO:0000118 "is member of" xsd:string
property_value: IAO:0000118 "member part of" xsd:string
property_value: IAO:0000119 "SIO" xsd:string
property_value: RO:0001900 RO:0001901
is_a: BFO:0000050 ! part of
inverse_of: RO:0002351 ! has member

[Typedef]
id: RO:0002351
name: has member
def: "has member is a mereological relation between a collection and an item." []
property_value: IAO:0000119 "SIO" xsd:string
property_value: RO:0001900 RO:0001901
is_a: BFO:0000051 ! has part

[Typedef]
id: RO:0002502
name: depends on
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: seeAlso BFO:0000169

[Typedef]
id: RO:0010001
name: generically depends on
def: "A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*." []
synonym: "g-depends on" EXACT []
property_value: IAO:0000112 "Genetic information generically depend on molecules of DNA." xsd:string
property_value: IAO:0000112 "The novel *War and Peace* generically depends on this copy of the novel." xsd:string
property_value: IAO:0000112 "The pattern shared by chess boards generically depends on any chess board." xsd:string
property_value: IAO:0000112 "The score of a symphony g-depends on a copy of the score." xsd:string
property_value: IAO:0000112 "This pdf file generically depends on this server." xsd:string
property_value: IAO:0000119 "[072-ISO]" xsd:string
domain: BFO:0000031 ! generically dependent continuant
range: BFO:0000004 ! independent continuant
holds_over_chain: RO:0000052 RO:0000058
inverse_of: RO:0010002 ! is carrier of

[Typedef]
id: RO:0010002
name: is carrier of
def: "*b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*" []
property_value: IAO:0000112 "Molecules of DNA are carriers of genetic information." xsd:string
property_value: IAO:0000112 "This copy of *War and Peace* is carrier of the novel written by Tolstoy." xsd:string
property_value: IAO:0000112 "This hard drive is carrier of these data items." xsd:string
property_value: IAO:0000119 "[072-ISO]" xsd:string
domain: BFO:0000004 ! independent continuant
range: BFO:0000031 ! generically dependent continuant
holds_over_chain: RO:0000059 RO:0000053

[Typedef]
id: STATO:0000101
name: has numerator
def: "the relationship between a fraction and the number above the line" []
property_value: IAO:0000117 "Alejandra Gonzalez-Beltran" xsd:string
property_value: IAO:0000117 "Orlaith Burke" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "AGB" xsd:string
is_asymmetric: true

[Typedef]
id: STATO:0000102
name: executes
def: "relationship between a planned process and the plan specification that it carries out; it is defined as equivalent to the composed relationship (realizes o concretizes)" []
property_value: IAO:0000117 "Alejandra Gonzalez-Beltran" xsd:string
property_value: IAO:0000117 "Orlaith Burke" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "AGB" xsd:string

[Typedef]
id: STATO:0000259
name: has denominator
def: "the relationship between a fraction and the number below the line (or divisor)" []
property_value: IAO:0000117 "Alejandra Gonzalez-Beltran" xsd:string
property_value: IAO:0000117 "Orlaith Burke" xsd:string
property_value: IAO:0000117 "Philippe Rocca-Serra" xsd:string
property_value: IAO:0000119 "AGB" xsd:string