vibso-base.obo

format-version: 1.2
data-version: vibso/releases/2024-09-23/vibso-base.owl
idspace: dce http://purl.org/dc/elements/1.1/ 
idspace: dcterms http://purl.org/dc/terms/ 
idspace: DOI http://doi.org/ 
idspace: ex https://example.instances/ 
idspace: ORCID http://orcid.org/ 
idspace: prov http://www.w3.org/ns/prov# 
idspace: ROR http://ror.org/ 
idspace: schema http://schema.org/ 
idspace: skos http://www.w3.org/2004/02/skos/core# 
idspace: wikipedia https://en.wikipedia.org/wiki/ 
ontology: vibso/vibso-base
property_value: dce:type IAO:8000001
property_value: dcterms:contributor https://orcid.org/0000-0001-7694-5519
property_value: dcterms:contributor https://orcid.org/0000-0002-1595-3213
property_value: dcterms:contributor https://orcid.org/0000-0002-2239-3955
property_value: dcterms:contributor https://orcid.org/0000-0002-4378-6061
property_value: dcterms:creator https://www.wikidata.org/wiki/Q96678459
property_value: dcterms:creator "VIBSO Workgroup" xsd:string
property_value: dcterms:description "_WIP - NOT READY FOR PRODUCTION_ The Vibration Spectroscopy Ontology (VIBSO) is used to represent information regarding the excution and analysis of vibrational spectroscopy assays." xsd:string
property_value: dcterms:license https://creativecommons.org/licenses/by/4.0/
property_value: dcterms:title "Vibrational Spectroscopy Ontology" xsd:string
property_value: owl:versionInfo "2024-09-23" xsd:string

[Term]
id: VIBSO:0000000
name: vibrational spectrometer configuration specification
def: "A setting datum that specifies the needed settings of a spectrometer used in vibrational spectroscopy." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/39

[Term]
id: VIBSO:0000001
name: Raman spectrometer configuration
def: "A device setting that represents the measured or set physical qualities which make up the configuration state of a Raman spectrometer at the time of a measurement (e.g. operating temperature, exitation wavelength, groove density, ...)." []
is_a: OBI:0000654
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000112 "The set of meassured configuration characteristics of a Raman spectrometer, like the operating temperature of a Raman spectrometer." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/47

[Term]
id: VIBSO:0000002
name: integration time setting
def: "A setting datum that specifies the length of time that a photo detector is allowed to collect photons before passing the accumulated charge to the A/D converter for processing. The minimum integration time is the shortest integration time the device supports and is dependent on how fast the detector can read out all of the pixel information. Integration time should not be confused with data transfer speed." [] {dce:source="i"}
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: IAO:0000118 "integration period setting" xsd:string
property_value: IAO:0000118 "integration time" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/40

[Term]
id: VIBSO:0000003
name: preamplifier gain setting
def: "A setting datum that specifies the preamplifier gain in CCD sensors." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/41

[Term]
id: VIBSO:0000004
name: horizontal shift speed setting
def: "A setting datum that specifies the horizontal shift speed in CCD sensors." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/42

[Term]
id: VIBSO:0000005
name: vertical shift speed setting
def: "A setting datum that specifies the vertical shift speed in CCD sensors." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/42

[Term]
id: VIBSO:0000006
name: device temperature setting
def: "A setting datum that specifies the operating temperature of a device." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/43

[Term]
id: VIBSO:0000007
name: number of accumulations
def: "A setting datum that specifies the desired number of measurements a spectrometer has to perform on the same location, without position change to produce an usable spectrum. This setting datum is relevant to improve the signal to noise ratio." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class might better be defined in a more general device ontology." xsd:string
property_value: IAO:0000118 "number of acquisitions" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/30

[Term]
id: VIBSO:0000008
name: CCD sensor binning read mode setting
def: "A setting datum that specifies the binning read mode of a device with a CCD sensor." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/46

[Term]
id: VIBSO:0000009
name: groove density
def: "A physical quality inhering in a diffraction grating device by virtue of the device's function to diffract light. This quality specifically depends on the number of grooves per area of the grating device and is usually expressed in grooves per millimeter." [] {dce:source="wikipedia:Diffraction_grating", dce:source=":~:text=The%20groove%20density%20(or%20groove,of%20the%20operational%20wavelength%20range"}
is_a: PATO:0001018
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "temp class until NTR in PATO has been accepted and merged (https://github.com/pato-ontology/pato/issues/541)" xsd:string
property_value: IAO:0000118 "groove frequency" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/45

[Term]
id: VIBSO:0000010
name: groove density setting
def: "A setting datum that specifies the number of grooves in a diffraction grating device." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: IAO:0000118 "grating" xsd:string
property_value: IAO:0000118 "grating setting" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/45

[Term]
id: VIBSO:0000011
name: diffraction grating
def: "A device that is an optical component with a periodic structure that diffracts light into several beams travelling in different directions (i.e. different diffraction angles)" [] {dce:source="wikipedia:Diffraction_grating"}
is_a: OBI:0000968
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/49

[Term]
id: VIBSO:0000012
name: deprecated_excitation wavelength
def: "A physical quality of the light source that is used used to excite a system to a higher energy state." []
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class is not needed, as PATO:wavelength is sufficient, if this quality of a Raman device is really needed." xsd:string
property_value: IAO:0000231 IAO:0000103
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/48
is_obsolete: true
replaced_by: PATO:0001242

[Term]
id: VIBSO:0000013
name: excitation wavelength setting
def: "A setting datum that specifies the wavelength of an electromagnetic radiation source (e.g. a laser) which has the function to excite the energy state of a target material." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000116 "This class should better be defined in a more general device ontology or a domain ontology with the scope of optical devices." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/48

[Term]
id: VIBSO:0000014
name: objective magnification factor setting
def: "A setting datum that specifies the magnification factor of the objective collecting the scattered light." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "100x" xsd:string
property_value: IAO:0000118 "magnification" xsd:string
property_value: IAO:0000118 "magnification setting" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/24%20

[Term]
id: VIBSO:0000015
name: spectral window range maximum
def: "A setting datum that specifies the upper boundary of the spectral window range utilized during the acquisition of spectroscopic data." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000112 "210 cm^-1" xsd:string
property_value: IAO:0000116 "It needs to be determined, if this is also part of another kind of spectrum, such as a vibrational spectrum in general. We also need to decide, if we need to also model the terms window size and window center, from which this term is derived." xsd:string
property_value: IAO:0000118 "acquisition band maximum" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/31

[Term]
id: VIBSO:0000016
name: spectral window range minimum
def: "A setting datum that specifies the lower boundary of the spectral window range utilized during the acquisition of spectroscopic data." []
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: IAO:0000112 "1960 cm^-1" xsd:string
property_value: IAO:0000116 "It needs to be determined, if this is also part of another kind of spectrum, such as a vibrational spectrum in general. We also need to decide, if we need to also model the terms window size and window center, from which this term is derived." xsd:string
property_value: IAO:0000118 "acquisition band minimum" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/31

[Term]
id: VIBSO:0000017
name: incident light power datum
def: "A scalar measurement datum that is the result of measuring the incoming light power before the sample holder and which depends on the laser power and on the dispersive behaviour of the filters and optical components." []
comment: The incident power is an elementary measurement parameter allowing to compare among measurements conducted with the same setup. A thorough investigation of the effects of light irradiation onto the sample depends on the local irradiance (power per unit area) and requires deeper knowledge of the irradiation geometry, e.g. width, depth and shape of the focal spot.
is_a: IAO:0000032
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: IAO:0000112 "200 mW" xsd:string
property_value: IAO:0000118 "excitation light power" xsd:string
property_value: IAO:0000118 "light power on the sample" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/29

[Term]
id: VIBSO:0000018
name: region of interest
def: "A site that refers to a user-defined portion of the image area in which data will be acquired. The remainder of the image area will be discarded." [] {dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q57"}
is_a: BFO:0000029
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000116 "See also https://w3id.org/reproduceme#ROI & http://purl.obolibrary.org/obo/NCIT_C85402" xsd:string
property_value: IAO:0000118 "imaging region of interest" xsd:string
property_value: IAO:0000118 "ROI" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000019
name: region of interest width
def: "A setting datum that specifies the width (length in the X direction) of the region of interest." []
comment: region of interest width = (point distance X) * (number of measurements X)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "1 mm" xsd:string
property_value: IAO:0000118 "ROI horizontal length" xsd:string
property_value: IAO:0000118 "ROI width" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000020
name: region of interest breadth
def: "A setting datum that specifies the height (length in the Y direction) of the region of interest." []
comment: region of interest breadth = (point distance Y) * (number of measurements Y)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "0.5 mm" xsd:string
property_value: IAO:0000118 "ROI breadth" xsd:string
property_value: IAO:0000118 "ROI lateral length" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000021
name: region of interest depth
def: "A setting datum that specifies the depth (length in the Z direction) of the region of interest." []
comment: region of interest depth = (point distance Z) * (number of measurements Z)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "0.1 mm" xsd:string
property_value: IAO:0000118 "ROI depth" xsd:string
property_value: IAO:0000118 "ROI vertical length" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000022
name: point distance X
def: "A setting datum that specifies the equal distance which the incident light beam will be moved laterally in the X direction on a given sample within the region of interest after each measurement, when performing a spatially resolved spectroscopy." []
comment: point distance X = (region of interest width) / (number of measurements X)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "20 µm" xsd:string
property_value: IAO:0000118 "sampling pace in the X direction" xsd:string
property_value: IAO:0000118 "sampling step in the X direction" xsd:string
property_value: IAO:0000118 "voxel distance in the X direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000023
name: point distance Y
def: "A setting datum that specifies the equal distance which the incident light beam will be moved laterally in the Y direction on a given sample within the region of interest after each measurement, when performing a spatially resolved spectroscopy." []
comment: point distance Y = (region of interest breadth) / (number of measurements Y)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "10 µm" xsd:string
property_value: IAO:0000118 "sampling pace in the Y direction" xsd:string
property_value: IAO:0000118 "sampling step in the Y direction" xsd:string
property_value: IAO:0000118 "voxel distance in the Y direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000024
name: point distance Z
def: "A setting datum that specifies the equal distance which the incident light beam will moved along the focal axis within the region of interest, when performing a spatially resolved spectroscopy." []
comment: point distance Z = (region of interest depth) / (number of measurements Z)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "10 µm" xsd:string
property_value: IAO:0000118 "axial mapping distance" xsd:string
property_value: IAO:0000118 "sampling pace in the Z direction" xsd:string
property_value: IAO:0000118 "sampling step in the Z direction" xsd:string
property_value: IAO:0000118 "vertical mapping distance" xsd:string
property_value: IAO:0000118 "voxel distance in the Z direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000025
name: number of measurements X
def: "A setting datum that specifies how many equally configured measurements of a sample are to be performed along the X-axis of a certain region of interest. Together with the point distance X, this setting defines the region of interest width." []
comment: number of measurements X = (region of interest width) / (point distance X)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "50" xsd:string
property_value: IAO:0000118 "number of points in the X direction" xsd:string
property_value: IAO:0000118 "number of points per line" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000026
name: number of measurements Y
def: "A setting datum that specifies how many equally configured measurements of a sample are to be performed along the Y-axis of a certain region of interest. Together with the point distance Y, this setting defines the region of interest breadth." []
comment: number of measurements = (region of interest breadth) / (point distance Y)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "100" xsd:string
property_value: IAO:0000118 "number of lines per layer" xsd:string
property_value: IAO:0000118 "number of points in the Y direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000027
name: number of measurements Z
def: "A setting datum that specifies how many equally configured measurements of a sample are to be performed in the vertical direction (on the Z-axis) of a certain region of interest. Together with the focal point distance, this setting defines the region of interest depth." []
comment: number of measurements Z = (region of interest depth) / (point distance Z)
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0001-7694-5519
property_value: dce:contributor ORCID:0000-0002-2239-3956
property_value: IAO:0000112 "10" xsd:string
property_value: IAO:0000118 "number of layers per acquisition" xsd:string
property_value: IAO:0000118 "number of points in the Z direction" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32

[Term]
id: VIBSO:0000028
name: Raman raw data
def: "A measurement datum that is obtained from a calibrated and ready Raman spectrometer and prior to be submitted to any mathematical modification. The only corrections on the data shall be the one associated with the spectrometer. The data will assign pixels readouts with nm as per calibration of the spectrometer and a.u. as intensity readout but will not be corrected in relationship of the incident monochromatic beam." [] {dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q64"}
is_a: IAO:0000109
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000118 "raw Raman data" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/77

[Term]
id: VIBSO:0000029
name: lens numerical aperture
def: "A setting datum that, as a dimensionless number, represents the quality which characterizes the range of angles over which an optical system can accept or emit light [dc:source wikidata:Numerical_aperture]. It gets calculated by the sine of one half of the vertex angle of the largest cone of meridional rays that can enter or leave an optical system or element, multiplied by the refractive index of the medium in which the cone is located." [] {dce:source="wikipedia:Numerical_aperture", dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q385"}
is_a: IAO:0000140
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "The light was focused onto the embedded sample using a 100× objective with a numerical aperture of 0.9, resulting in a diffraction-limited in-plane laser spot size of <1 μm." xsd:string
property_value: IAO:0000116 "possible equivalents in other terminologies: http://purl.obolibrary.org/obo/NCIT_C181921 & https://w3id.org/reproduceme#LensNA" xsd:string
property_value: IAO:0000118 "numerical aperture" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/76

[Term]
id: VIBSO:0000030
name: primary Raman data
def: "A data item that is obtained by processing raw Raman data." []
is_a: IAO:0000027
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/132

[Term]
id: VIBSO:0000031
name: resolution
def: "A physical quality of a measurement device that expresses (realizes) the device's capacity to distinguish between two distinct but closely related measurements of the same physical quality or type, often quantified as the smallest detectable difference (resolution interval) between measured values." []
is_a: PATO:0001018
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000032
name: resolution interval
def: "A data item that quantifies a resolution, by representing the minimum measurable difference between two measurements of the same physical quality or type, such that the measurements can be distinguished as different." []
is_a: IAO:0000027
relationship: IAO:0000136 VIBSO:0000031 ! resolution
relationship: OBI:0001938 OBI:0001933
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000033
name: resolution power
def: "A ratio that quantifies the ability of a measurement device to distinguish between small differences in measurement values, expressed as the ratio between a typical measurement datum and the corresponding resolution interval." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: STATO:0000184
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000034
name: spatial resolution interval
def: "A resolution interval that quantifies the minimum distance between two points such that they can be considered two separate points in a given microscope under specific experimental parameters." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000035
name: lateral resolution interval as angle
def: "A spatial resolution interval that quantifies the minimum angular separation between two points on a plane orthogonal to the light ray, expressed as an angle centered in the lens (Formula: δθ = 1.22 * λ / D)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δθ = 1.22cdotλ/D$
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000036
name: lateral resolution interval as length
def: "A spatial resolution interval that quantifies the minimum linear separation between two points on a plane orthogonal to the light ray, expressed as the distance from the center of the optical spot (Formula: δr = 0.61 * λ / NA)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δr = 0.61cdotλ/NA$ (Abbe formula, derived from the Rayleigh criterion with the Kirchhoff, Debye and paraxial approximation) $= 1.22 λcdot(f/sharp)$
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000037
name: axial resolution interval as length
def: "A spatial resolution interval that quantifies the minimum measurable separation between two points along the axis of propagation of the light ray, expressed as a linear distance (Formula: δz = 2 ⋅ n ⋅ λ / NA²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δz = 2cdot ncdotλ/NA²$
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000038
name: spectral resolution interval
def: "A resolution interval that quantifies the minimum separation between two narrow peaks in a spectrum such that they can be distinguished as two separate peaks." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000039
name: spectral resolution interval as wavelength
def: "A spectral resolution interval that quantifies the minimum separation between two wavelengths such that they can be distinguished as different (Formula: δλ = λ / (n * N))." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5", dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q22", dce:source="https://wiki.charisma.ideaconsult.net/wiki/Item:Q200"}
comment: $δλ = λ / (ncdot N) = RFcdot Δλcdot WS / n$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000040
name: spectral resolution interval as wavenumber
def: "A spectral resolution interval that quantifies the minimum separation between two wavenumbers such that they can be distinguished as different (Formula: δν~ = δλ / λ²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δbarν$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000041
name: spectral resolution interval as frequency
def: "A spectral resolution interval that quantifies the minimum separation between two frequencies such that they can be distinguished as different (Formula: δν = c * δν~ = c * δλ / λ²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δν$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000042
name: spectral resolution interval as energy
def: "A spectral resolution interval that quantifies the minimum separation between two energy levels such that they can be distinguished as different (Formula: δE = h * δν = h * c * δν~ = h * c * δλ / λ²)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: $δE$
is_a: VIBSO:0000038 ! spectral resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000043
name: radiometric resolution interval
def: "A resolution interval that quantifies the minimum difference in irradiated energy, often coded as gray level in a grayscale or look-up-table (LUT)." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000044
name: temporal resolution interval
def: "A resolution interval that quantifies the temporal separation between two measurements or frames, often expressed as the inverse of the frame rate. In techniques where temporal resolution is not directly derived from frame rate, it quantifies the minimum temporal interval between two resolvable events." [] {dce:source="http://www.w3.org/2002/07/ISBN%20081946043-5"}
comment: In techniques where the temporal resolution is not given directly from a temporal distance between subsequent measurements (e.g., pulsed time resolved pump-probe techniques), it can be used more properly as defined above
is_a: VIBSO:0000032 ! resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0000045
name: diffraction limit
def: "A spatial resolution interval that quantifies the theoretical maximum spatial resolution achievable by an optical system, constrained by the diffraction of light." [] {dce:source="d25805417e256"}
comment: The Abbe diffraction limit, is defined as λ/ (2 NA) in which λ is the wavelength of the illuminating light and NA is the numerical aperture.
is_a: VIBSO:0000034 ! spatial resolution interval
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: dce:contributor ORCID:0000-0003-2673-366X
property_value: IAO:0000116 "This class is actually to general for VIBSO's scope. It needs to be discussed with CHMO and OBI devs which of these is a better home, as there currently does not exist an optical device ontology within OBO Foundry. OBI contains most terms around optical devices so far." xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/125

[Term]
id: VIBSO:0003017
name: spectral window center
def: "A setting datum that specifies the middle wavelength/wavenumber of a spectrum, equal to the average of the maximum and minimum of the spectral window range utilized during the acquisition of spectroscopic data. It corresponds to the optimal alignment or centering of the spectrometer to ensure that the most relevant spectral features are captured effectively within the defined acquisition range." []
is_a: IAO:0000140
is_a: OBI:0000674
property_value: dce:contributor ORCID:0000-0002-1595-3213
property_value: dce:contributor ORCID:0000-0002-2239-3955
property_value: IAO:0000112 "560 cm^-1" xsd:string
property_value: seeAlso https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/88