diff --git a/.examples/lanthipeptide_lactobacillus/df_regions_antismash_7.0.0.csv b/.examples/lanthipeptide_lactobacillus/df_regions_antismash_7.0.0.csv deleted file mode 100644 index 6f4494b5..00000000 --- a/.examples/lanthipeptide_lactobacillus/df_regions_antismash_7.0.0.csv +++ /dev/null @@ -1,5 +0,0 @@ -bgc_id,genome_id,region,accession,start_pos,end_pos,contig_edge,product,region_length,source,gbk_path -CR954253.1.region001,GCA_000056065.1,1.1,CR954253.1,17407,39909,False,['lanthipeptide-class-iii'],22502,bgcflow,data/interim/antismash/7.0.0/GCA_000056065.1/CR954253.1.region001.gbk -CR954253.1.region003,GCA_000056065.1,1.3,CR954253.1,1745672,1767868,False,['lanthipeptide-class-iv'],22196,bgcflow,data/interim/antismash/7.0.0/GCA_000056065.1/CR954253.1.region003.gbk -CP000156.1.region002,GCA_000191165.1,1.2,CP000156.1,1767251,1789447,False,['lanthipeptide-class-iv'],22196,bgcflow,data/interim/antismash/7.0.0/GCA_000191165.1/CP000156.1.region002.gbk -CP000412.1.region001,GCA_000014405.1,1.1,CP000412.1,17283,39785,False,['lanthipeptide-class-iii'],22502,bgcflow,data/interim/antismash/7.0.0/GCA_000014405.1/CP000412.1.region001.gbk diff --git a/.examples/lanthipeptide_lactobacillus/df_regions_antismash_7.1.0.csv b/.examples/lanthipeptide_lactobacillus/df_regions_antismash_7.1.0.csv new file mode 100644 index 00000000..1bdb59b0 --- /dev/null +++ b/.examples/lanthipeptide_lactobacillus/df_regions_antismash_7.1.0.csv @@ -0,0 +1,8 @@ +bgc_id,genome_id,region,accession,start_pos,end_pos,contig_edge,product,region_length,most_similar_known_cluster_id,most_similar_known_cluster_description,most_similar_known_cluster_type,similarity,source,gbk_path +CR954253.1.region001,GCA_000056065.1,1.1,CR954253.1,17407,39909,False,['lanthipeptide-class-iii'],22502,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000056065.1/CR954253.1.region001.gbk +CR954253.1.region002,GCA_000056065.1,1.2,CR954253.1,125153,136119,False,['RiPP-like'],10966,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000056065.1/CR954253.1.region002.gbk +CR954253.1.region003,GCA_000056065.1,1.3,CR954253.1,1745672,1767868,False,['lanthipeptide-class-iv'],22196,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000056065.1/CR954253.1.region003.gbk +CP000156.1.region001,GCA_000191165.1,1.1,CP000156.1,117260,128451,False,['RiPP-like'],11191,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000191165.1/CP000156.1.region001.gbk +CP000156.1.region002,GCA_000191165.1,1.2,CP000156.1,1767251,1789447,False,['lanthipeptide-class-iv'],22196,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000191165.1/CP000156.1.region002.gbk +CP000412.1.region001,GCA_000014405.1,1.1,CP000412.1,17283,39785,False,['lanthipeptide-class-iii'],22502,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000014405.1/CP000412.1.region001.gbk +CP000412.1.region002,GCA_000014405.1,1.2,CP000412.1,120275,131241,False,['RiPP-like'],10966,,,,,bgcflow,data/interim/antismash/7.1.0/GCA_000014405.1/CP000412.1.region002.gbk diff --git a/.examples/lanthipeptide_lactobacillus/project_config.yaml b/.examples/lanthipeptide_lactobacillus/project_config.yaml index 86f707c0..06bd3a46 100644 --- a/.examples/lanthipeptide_lactobacillus/project_config.yaml +++ b/.examples/lanthipeptide_lactobacillus/project_config.yaml @@ -1,7 +1,7 @@ name: lanthipeptide_lactobacillus pep_version: 2.1.0 description: 'A selection of lanthipeptides from Lactobacillus delbrueckii' -sample_table: df_regions_antismash_7.0.0.csv +sample_table: df_regions_antismash_7.1.0.csv rules: bigslice: TRUE