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@Mye-InfoBank

Mye-InfoBank

COST Action CA20117 - Mye-InfoBank is dedicated to converting molecular profiles of myeloid cells into biomarkers for inflammation and cancer.

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  1. scRAFIKI scRAFIKI Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Nextflow 9

  2. scib scib Public

    Forked from theislab/scib

    Benchmarking analysis of data integration tools

    Python

  3. cellxgene_VIP cellxgene_VIP Public

    Forked from interactivereport/cellxgene_VIP

    Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…

    HTML

  4. cellxgene cellxgene Public

    Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    JavaScript

  5. SIMBA-QC SIMBA-QC Public

    This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.

    Python

  6. SIMBA-Downstream SIMBA-Downstream Public

    This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.

    Python

Repositories

Showing 7 of 7 repositories
  • scHPL Public Forked from lcmmichielsen/scHPL
    Mye-InfoBank/scHPL’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Sep 6, 2024
  • SIMBA-Downstream Public

    This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.

    Mye-InfoBank/SIMBA-Downstream’s past year of commit activity
    Python 0 0 1 0 Updated Jul 16, 2024
  • scRAFIKI Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Mye-InfoBank/scRAFIKI’s past year of commit activity
    Nextflow 9 BSD-3-Clause 0 5 0 Updated Jun 30, 2024
  • SIMBA-QC Public

    This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.

    Mye-InfoBank/SIMBA-QC’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 20, 2024
  • scib Public Forked from theislab/scib

    Benchmarking analysis of data integration tools

    Mye-InfoBank/scib’s past year of commit activity
    Python 0 MIT 64 0 0 Updated Apr 9, 2024
  • cellxgene Public Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    Mye-InfoBank/cellxgene’s past year of commit activity
    JavaScript 0 MIT 118 0 0 Updated Mar 13, 2024
  • cellxgene_VIP Public Forked from interactivereport/cellxgene_VIP

    Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

    Mye-InfoBank/cellxgene_VIP’s past year of commit activity
    HTML 0 MIT 46 0 0 Updated Feb 24, 2024

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