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If pipeline_executor.py ... command is too long, it will fail silently #442

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nzxwang opened this issue Oct 28, 2019 · 0 comments
Open

If pipeline_executor.py ... command is too long, it will fail silently #442

nzxwang opened this issue Oct 28, 2019 · 0 comments
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@bcdarwin

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nzxwang commented Oct 28, 2019

The only indication will be in the executor log.

parallel: Error: Command line too long (142448 >= 131049) at input 0: pipeline_executor.py --local --uri-file /hpf/large...

This can occur if a user runs a pipeline with a lot of files. Then the user will just see "submitting executors" while the executors already failed to connect and are no longer in the squeue or qstat.
@nzxwang nzxwang assigned nzxwang and bcdarwin and unassigned nzxwang Oct 31, 2019
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