From 668b2784a7d8977ba8f80d45c152ea0165c171a0 Mon Sep 17 00:00:00 2001 From: Priscille Date: Wed, 10 Jun 2020 22:27:45 +0200 Subject: [PATCH] STYLE: Modified final result filenames --- pymialsrtk/pipelines/anatomical/srr.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/pymialsrtk/pipelines/anatomical/srr.py b/pymialsrtk/pipelines/anatomical/srr.py index d8a664ca0..e0e3b7d3c 100644 --- a/pymialsrtk/pipelines/anatomical/srr.py +++ b/pymialsrtk/pipelines/anatomical/srr.py @@ -303,14 +303,14 @@ def create_workflow(bids_dir, process_dir, subject, p_stacksOrder, session=None, if srID is None: for stack in p_stacksOrder: - print( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', ' ---> ',sub_ses+'_run-'+str(stack)+'_T2w_preproc.nii.gz') - substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', sub_ses+'_run-'+str(stack)+'_T2w_preproc.nii.gz') ) + print( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', ' ---> ',sub_ses+'_run-'+str(stack)+'_desc-preproc_T2w.nii.gz') + substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', sub_ses+'_run-'+str(stack)+'_desc-preproc_T2w.nii.gz') ) print( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm_transform_'+str(len(p_stacksOrder))+'V.txt', ' ---> ', sub_ses+'_run-'+str(stack)+'_T2w_from-origin_to-SDI_mode-image_xfm.txt') substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm_transform_'+str(len(p_stacksOrder))+'V.txt', sub_ses+'_run-'+str(stack)+'_T2w_from-origin_to-SDI_mode-image_xfm.txt') ) - print( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', ' ---> ', sub_ses+'_run-'+str(stack)+'_T2w_desc-LRmask.nii.gz') - substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', sub_ses+'_run-'+str(stack)+'_T2w_desc-LRmask.nii.gz') ) + print( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', ' ---> ', sub_ses+'_run-'+str(stack)+'_desc-LRmask_T2w.nii.gz') + substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', sub_ses+'_run-'+str(stack)+'_desc-LRmask_T2w.nii.gz') ) print( 'SDI_'+sub_ses+'_'+str(len(p_stacksOrder))+'V_rad1.nii.gz', ' ---> ', sub_ses+'_rec-SDI_T2w.nii.gz')