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Commits on Jun 8, 2026

• docs: fix ~100 MB download size; add pipeline restructure plan

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• docs: README covers multi-file conform/overwrite and lookup fallbacks

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• docs: document conform mode, --overwrite-to, and lookup fallbacks

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Commits on Jun 5, 2026

• conform mode + --overwrite-to for --fasta convert

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• fallbacks: ENA prefix strip + .N/vN version swap on lookup miss

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Commits on Jun 4, 2026

• convert: multi-file mode (one FASTA + N annotations)

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Commits on Jun 3, 2026

• Add gzip-aware I/O and a pytest suite with CI

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Commits on Jun 1, 2026

• Fix scheduled sharded run + add full-set guard + correct schema docs

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• Make sharded full-set workflow the weekly job

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• Keep cached TSV for offline schema rebuilds

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Commits on May 29, 2026

• Use pipe (not comma) as TSV list delimiter

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• Fix SIGPIPE in merge checks (head under pipefail)

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• Add full-scale sharded matrix workflow for 47k

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• shard scaffold

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• Add genome coverage columns (schema v3)

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Commits on May 28, 2026

• Restrict v2.0 to Chromosome+ assemblies

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Commits on May 27, 2026

• Dedupe SSL setup; --insecure mutates single source

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• Doc cleanup, lowercase TSV columns for consistency

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• Switch pipeline to NCBI summary-file streaming, schema v2 (merged-row)

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• Switch pipeline to NCBI summary-file streaming, schema v2 (merged-row)

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• Switch pipeline to NCBI summary-file streaming, schema v2 (merged-row)

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Commits on May 19, 2026

• feat(collect): categorize HTTP failures, retry transient errors

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• ci: bump job timeout to 12h

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Commits on May 15, 2026

• feat: package as a proper Python distribution + first-run setup

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• feat: first-run download and build of local alias DB

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• ci: upload failures.tsv as Release asset

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Commits on May 14, 2026

• feat: structured failure logging in collect_aliases

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• docs: fix data download instructions; add single-row audit findings

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• docs: update design doc to reflect shipped v1; add README.

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• feat: add FASTA translator. Closes v1 FASTA support.

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• refactor: extract GFF translator into formats/ package

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• refactor: introduce AliasSource abstraction

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Commits on May 13, 2026

• Rename workflow and enhance data processing steps

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• Switch v0 to SQLite-backed lookup; add migration script; also normalized schema and drop unused indexes keepng unzipped at 259mb

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• Switch v0 to SQLite-backed lookup; add migration script

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