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link to theme colors
guidelines on annotating change
added code block language hints
replaced NUMPY DOC HOWTO with updated link https://numpydoc.readthedocs.io/en/latest/format.html#docstring-standard
Updated WritingDocumentation (markdown)
list error messages that are encountered when doing math without raw strings
updated http to SSL protocol for docs.mdanalysis.org; also updated release doc procedure (no more pypi)
Remove old pythonhosted.org link
Updated to warn about python2 vs 3 sphinx problems.
link to NumPy style doc strings
clean up and removal of outdated content: moved proposed New Doc Guidelines to own page and removed anything on manually building developer docs (see #386 for the new procedure)
updated links to sources on GitHub Note that the links were also updated in release notes etc, i.e. they are now pointing to the most reason versions of the files. It was too much work to make them point to the correct commits. perl -wpi~ -e 's(http://code.google.com/p/mdanalysis/source/browse/package#package%2Fexamples)(https://github.com/MDAnalysis/mdanalysis/tree/develop/package/examples)g' *md perl -wpi~ -e 's(http://code.google.com/p/mdanalysis/source/browse/#git%2Fpackage%2Fexamples)(https://github.com/MDAnalysis/mdanalysis/tree/develop/package/examples)g' *md perl -wpi~ -e 's(http://code.google.com/p/mdanalysis/source/browse/#git%2Fpackage%2Fdoc%2Fsphinx%2Fsource%2Fdocumentation_pages)(https://github.com/MDAnalysis/mdanalysis/tree/develop/package/doc/sphinx/source/documentation_pages)g' *md perl -wpi~ -e 's(http://code.google.com/p/mdanalysis/source/browse/#git%2Fpackage%2FMDAnalysis%2Fanalysis)(https://github.com/MDAnalysis/mdanalysis/tree/develop/package/MDAnalysis/analysis)g' *.md perl -wpi~ -e 's(http://code.google.com/p/mdanalysis/source/browse/)(https://github.com/MDAnalysis/mdanalysis/)g' *.md
updated links to developer docs perl -wpi~ -e 's(http://mdanalysis.googlecode.com/git-history/develop/package/doc/html)(http://devdocs.mdanalysis.org)g' *.md
updated links to docs perl -wpi~ -e 's(https?://mdanalysis.googlecode.com/git/doc/html)(http://docs.mdanalysis.org)g' *.md perl -wpi~ -e 's(https?://mdanalysis.googlecode.com/git/package/doc/html)(http://docs.mdanalysis.org)g' *md
How-to build and distribute the docs with sphinx
`MDAnalysis.Universe ?` does not work in ipython for sure
updated links in serving docs
updated procedure for dev docs
-MDAnalysis wiki doc changes: -updated some of the simpler google code issue links to the new github / subdomain URL format for the issue tracker
../finishGoogleCodeGitHubWikiMigration/finishGoogleCodeGitHubWikiMigration: Moved pages from mdanalysis wiki branch to mdanalysis.wiki master branch.