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Commits on Apr 18, 2025

• Update README.rst (#5020)

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  tulga-rdn

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  af9848b

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• Parallelize lindensity (#5007)

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  tulga-rdn

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  e213f2b

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Commits on Apr 17, 2025

• Fixes benchmark for analysis/rms.py (#5006)

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  3 peopleauthored
  e64755c

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Commits on Apr 16, 2025

• Update ResidueGroup/SegmentGroup with ids (PDBParser: force chainid to segid / Universe: set groups) (#4965)

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  3 peopleauthored
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• Update _donor, _hydrogens, and _acceptors AtomGroups in HBondAnalysis whenever the selection strings are changed. (#5018)

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Commits on Apr 15, 2025

• Added dt support for `xtc` and `trr` trajectories. (#4908)

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  pbuslaev

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  orbeckst

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  089f49e

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• Fixes #3743: Modernize test assertions in test_base.py (#4951)

  Abdulrahman-PROG

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  4cca1d8

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Commits on Apr 9, 2025

• Extending test coverage for 2D visualization (#5000)

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  TRY-ER

  authored
  1cdb055

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Commits on Apr 8, 2025

• Updated LAMMPS dump file topology parser (#4995)

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  jpkrowe

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  f960aa1

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Commits on Mar 31, 2025

• Segid columns change to 73-76 for PDBParser (#5001)

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  yuyuan871111

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  7fb3534

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Commits on Mar 29, 2025

• GNMAnalysis fixes #4924 (#4961)

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  BHM-Bob

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  orbeckst

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Commits on Mar 21, 2025

• Implementing Numpy Performance Improvements for Array Copying (#4987)

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  lexi-x

  and

  Lexi Xu

  authored
  35d9d2e

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Commits on Mar 15, 2025

• update distopia docs (#4970)

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  orbeckst

  and

  RMeli

  authored
  dcaa087

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Commits on Mar 14, 2025

• Added PyPI badge to README (#4969)

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  namiroues

  authored
  adddc32

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• Removed duplicate installation instructions from API Docs (#4927)

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  namiroues

  authored
  9d072d9

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Commits on Mar 13, 2025

• Fix broken links in docs (#4941)

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  namiroues

  and

  IAlibay

  authored
  8fb40ad

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Commits on Mar 11, 2025

• Start 2.10.0-dev0 (#4960)

  IAlibay

  authored
  519c38d

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• Fix windows classifier in testsuite (#4958)

  IAlibay

  authored
  51b8271

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• Finalize v2.9.0 release (#4955)

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  IAlibay

  authored
  59aae2c

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Commits on Mar 10, 2025

• ENH: tpx 137 (GROMACS 2025.0) support (#4919)

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  tylerjereddy

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  al42and

  authored
  c83d030

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• Fixing deployment action (#4954)

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  IAlibay

  authored
  0eb54dd

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• mdakits are now optional deps (#4953)

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  IAlibay

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  orbeckst

  authored
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Commits on Mar 4, 2025

• Unpin parmed w/ numpy v2 (#4883)

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  IAlibay

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  lilyminium

  authored
  bd00f88

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Commits on Feb 25, 2025

• README.rst typo is fixed (#4931)

  jauy123

  authored
  6a75df0

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Commits on Feb 23, 2025

• Update AUTHORS (#4920)

  RMeli

  authored
  5115408

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Commits on Feb 19, 2025

• Added the documentation for run() method for HydrogenBondAnalysis() (#4917)

  jauy123

  authored
  6f8d875

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Commits on Feb 10, 2025

• distopia 0.4.0 compatibility changes (#4734)

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  hmacdope

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  orbeckst

  authored
  b79c77d

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Commits on Feb 7, 2025

• Update polymer.py to add clarity to the docs for persistent length (#4901)

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  tanishy7777

  and

  RMeli

  authored
  084b8cc

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Commits on Feb 4, 2025

• Update PR template after relicensing (#4860)

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  RMeli

  authored
  975486e

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Commits on Feb 2, 2025

• Fix broken links from MDanalysis Docs (#4882)

  tanishy7777

  authored
  c0e6552

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• update (#4887)

  RMeli

  authored
  1d2376e

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Commits on Jan 31, 2025

• test on small pdb for guesser (#4893)

  yuxuanzhuang

  authored
  f2efb8c

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Commits on Jan 26, 2025

• [fmt] format after PR#4800 (#4890)

  RMeli

  authored
  d222720

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Commits on Jan 22, 2025

• [CI] switch off autosyncing of labels (#4895)

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  orbeckst

  authored
  f260c4a

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Commits on Jan 12, 2025

• Transfer of `fasteners` dependency to `filelock` (#4800)

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  3 peopleauthored
  6842fd7

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