From 53145aa9cf10c2e2814485e0835da5c8f021b98b Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Sun, 6 Oct 2024 01:41:05 +0000 Subject: [PATCH] Sync notebooks --- notebooks/00_Setup.ipynb | 3 ++- notebooks/01_Concepts.ipynb | 4 ++-- notebooks/README.md | 2 +- notebooks/py_scripts/00_Setup.py | 3 ++- notebooks/py_scripts/01_Concepts.py | 4 ++-- 5 files changed, 9 insertions(+), 7 deletions(-) diff --git a/notebooks/00_Setup.ipynb b/notebooks/00_Setup.ipynb index 76c8015..9188baf 100644 --- a/notebooks/00_Setup.ipynb +++ b/notebooks/00_Setup.ipynb @@ -63,7 +63,8 @@ "For local use, download and install ...\n", "\n", "1. [Python 3.9](https://wiki.python.org/moin/BeginnersGuide/Download).\n", - "2. [mamba](https://mamba.readthedocs.io/en/latest/installation.html) as a\n", + "2. [mamba](https://mamba.readthedocs.io/en/latest/installation/mamba-installation.html)\n", + " as a\n", " replacement for conda. Spyglass installation is significantly faster with\n", " mamba.\n", " ```bash\n", diff --git a/notebooks/01_Concepts.ipynb b/notebooks/01_Concepts.ipynb index fcb7463..b0ebb07 100644 --- a/notebooks/01_Concepts.ipynb +++ b/notebooks/01_Concepts.ipynb @@ -36,8 +36,8 @@ "source": [ "## Other materials\n", "\n", - "DataJoint is an \"Object-relational mapping\" tool, which means that it gives us\n", - "a Python object for tables that exist on a shared SQL server. Many Spyglass\n", + "DataJoint is an tool that helps us create Python classes for\n", + "tables that exist on a shared SQL server. Many Spyglass\n", "imports are DataJoint tables like this.\n", "\n", "Any 'introduction to SQL' will give an overview of relational data models as\n", diff --git a/notebooks/README.md b/notebooks/README.md index 0982c46..565031d 100644 --- a/notebooks/README.md +++ b/notebooks/README.md @@ -28,7 +28,7 @@ spike sorting to optional manual curation of the output of the automated sorting. Spikesorting results from any pipeline can then be organized and tracked using -tools in [Spikesorting Analysis](./11_Spikesorting_Analysis.ipynb). +tools in [Spikesorting Analysis](./11_Spike_Sorting_Analysis.ipynb). ## 2. Position Pipeline diff --git a/notebooks/py_scripts/00_Setup.py b/notebooks/py_scripts/00_Setup.py index 8c2a1a1..1169999 100644 --- a/notebooks/py_scripts/00_Setup.py +++ b/notebooks/py_scripts/00_Setup.py @@ -45,7 +45,8 @@ # For local use, download and install ... # # 1. [Python 3.9](https://wiki.python.org/moin/BeginnersGuide/Download). -# 2. [mamba](https://mamba.readthedocs.io/en/latest/installation.html) as a +# 2. [mamba](https://mamba.readthedocs.io/en/latest/installation/mamba-installation.html) +# as a # replacement for conda. Spyglass installation is significantly faster with # mamba. # ```bash diff --git a/notebooks/py_scripts/01_Concepts.py b/notebooks/py_scripts/01_Concepts.py index 70e5f66..1275b59 100644 --- a/notebooks/py_scripts/01_Concepts.py +++ b/notebooks/py_scripts/01_Concepts.py @@ -30,8 +30,8 @@ # ## Other materials # -# DataJoint is an "Object-relational mapping" tool, which means that it gives us -# a Python object for tables that exist on a shared SQL server. Many Spyglass +# DataJoint is an tool that helps us create Python classes for +# tables that exist on a shared SQL server. Many Spyglass # imports are DataJoint tables like this. # # Any 'introduction to SQL' will give an overview of relational data models as