List view

• .... profit???

  lol

  No due date
  0% complete0 open0 closed

• Dynamic Padding

  Update padding of targets based on Mean read length/N50 if reads seen during the run.

  No due date
  0% complete0 open0 closed

• Pause Flag for tight loop

  Remove all checks from the tight loop of `targets.py`: https://github.com/LooseLab/readfish/blob/f128f4b1c6dd108fa858f6a3e4224693f26ca442/src/readfish/entry_points/targets.py#L349-L369 And instead replace with a `self.pause` attribute on the `Analysis` class that can be checked externally. This will _probably_ need to lock, and release the look whilst looping the pause. This will allow external threads to interact with the loop, and addition of extra any checks to whether the loop can run without increasing complexity and time doing checks inside the loop.

  No due date
  0% complete0 open0 closed

• Filtering of Reads based on Fields

  Filter reads based on arbitrary thresholds, such as mapping quality, basecalled quality, Primary mapping only etc...

  No due date

  •1/1 issues closed
  100% complete0 open1 closed

• Version info class

  See #275 Effectively adding the VersionInfo class from attrs https://github.com/python-attrs/attrs/blob/67e4ff273aeae7c322e58c07e41523cf177f475a/src/attr/_version_info.py#L12 Allows finer grained control of versioning

  No due date

  •0/1 issues closed
  0% complete1 open0 closed