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environment.yml
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name: swin_unetr
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.8=h166bdaf_0
- aniso8601=9.0.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bleach=5.0.1=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- certifi=2022.9.24=pyhd8ed1ab_0
- click=7.1.2=pyh9f0ad1d_0
- cloudpickle=2.2.0=pyhd8ed1ab_0
- cycler=0.11.0=pyhd8ed1ab_0
- cytoolz=0.12.0=py37h540881e_0
- dask-core=2022.2.0=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.6.3=py37hd23a5d3_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- eigen=3.4.0=h4bd325d_0
- entrypoints=0.4=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fftw=3.3.10=nompi_hf0379b8_105
- flask=1.1.4=pyhd8ed1ab_0
- flask-restx=0.5.1=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py37h540881e_0
- freetype=2.12.1=hca18f0e_0
- fsspec=2022.10.0=pyhd8ed1ab_0
- gettext=0.21.1=h27087fc_0
- glib=2.74.1=h6239696_0
- glib-tools=2.74.1=h6239696_0
- gst-plugins-base=1.21.1=h3e40eee_1
- gstreamer=1.21.1=hd4edc92_1
- hdf5=1.12.2=nompi_h2386368_100
- icu=70.1=h27087fc_0
- imagecodecs-lite=2019.12.3=py37hc105733_5
- imageio=2.22.0=pyhfa7a67d_0
- ipykernel=6.9.2=py37h25bab4e_0
- ipython=7.32.0=py37h89c1867_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.7.0=pyhd8ed1ab_0
- itsdangerous=1.1.0=py_0
- jack=1.9.21=he978b8e_1
- jedi=0.18.1=pyhd8ed1ab_2
- jinja2=2.11.3=pyhd8ed1ab_2
- jpeg=9e=h166bdaf_2
- jsonschema=2.6.0=py37_1002
- jupyter=1.0.0=py37h89c1867_7
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_console=6.4.3=pyhd8ed1ab_0
- jupyter_core=4.9.2=py37h89c1867_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_widgets=1.1.0=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py37h7cecad7_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h166bdaf_1003
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hc81fddc_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcap=2.66=ha37c62d_0
- libcblas=3.9.0=16_linux64_openblas
- libclang=15.0.3=default_h2e3cab8_0
- libclang13=15.0.3=default_h3a83d3e_0
- libcups=2.3.3=h3e49a29_2
- libcurl=7.86.0=h7bff187_1
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libflac=1.4.2=h27087fc_0
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h7a41b64_0
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libitk=5.2.1=hcedbc38_6
- libitk-devel=5.2.1=h0a2745d_6
- liblapack=3.9.0=16_linux64_openblas
- libllvm15=15.0.3=h63197d8_1
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopus=1.3.1=h7f98852_1
- libpng=1.6.38=h753d276_0
- libpq=14.5=hd77ab85_1
- libsndfile=1.1.0=h27087fc_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.39.4=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h55922b4_4
- libtool=2.4.6=h9c3ff4c_1008
- libudev1=252=h166bdaf_0
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- locket=1.0.0=pyhd8ed1ab_0
- markupsafe=1.1.1=py37h540881e_4
- matplotlib=3.5.3=py37h89c1867_2
- matplotlib-base=3.5.3=py37hf395dca_2
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=0.8.4=py37h5e8e339_1005
- mpg123=1.30.2=h27087fc_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.31=haf5c9bc_0
- mysql-libs=8.0.31=h28c427c_0
- nbconvert=5.6.1=pyhd8ed1ab_2
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=2.5=py_0
- notebook=5.7.11=py37h89c1867_0
- nspr=4.32=h9c3ff4c_1
- nss=3.78=h2350873_0
- numpy=1.21.6=py37h976b520_0
- openjpeg=2.5.0=h7d73246_1
- openssl=1.1.1s=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.3.0=pyhd8ed1ab_0
- pcre2=10.37=hc3806b6_1
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.2.0=py37h850a105_2
- pip=22.3=pyhd8ed1ab_0
- ply=3.11=py_1
- prometheus_client=0.15.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.27=pyha770c72_0
- prompt_toolkit=3.0.27=hd8ed1ab_0
- psutil=5.9.3=py37h540881e_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=14.0=h0d2025b_11
- pydicom=2.3.0=pyh6c4a22f_0
- pygments=2.13.0=pyhd8ed1ab_0
- pynrrd=0.4.2=pyh95af2a2_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py37hf30b843_0
- pyqt5-sip=12.11.0=py37hd23a5d3_0
- python=3.7.12=hb7a2778_100_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=2_cp37m
- pytz=2022.6=pyhd8ed1ab_0
- pywavelets=1.3.0=py37hda87dfa_1
- pyyaml=6.0=py37h540881e_4
- pyzmq=24.0.1=py37h0c0c2a8_0
- qt-main=5.15.6=hd477bba_1
- qtconsole=5.4.0=pyhd8ed1ab_0
- qtconsole-base=5.4.0=pyha770c72_0
- qtpy=2.2.1=pyhd8ed1ab_0
- readline=8.1.2=h0f457ee_0
- scikit-image=0.19.3=py37hfb7772e_1
- scipy=1.7.3=py37hf2a6cf1_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=65.5.0=pyhd8ed1ab_0
- simplegeneric=0.8.1=py_1
- simpleitk=2.1.1.1=py37h78a9f20_0
- sip=6.6.2=py37hd23a5d3_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.39.4=h4ff8645_0
- tbb=2021.6.0=h924138e_1
- tbb-devel=2021.6.0=h924138e_1
- terminado=0.17.0=pyh41d4057_0
- testpath=0.6.0=pyhd8ed1ab_0
- tifffile=2020.6.3=py_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- tornado=6.2=py37h540881e_0
- traitlets=5.5.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- unicodedata2=14.0.0=py37h540881e_1
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- werkzeug=1.0.1=pyh9f0ad1d_0
- wheel=0.37.1=pyhd8ed1ab_0
- widgetsnbextension=3.6.1=pyha770c72_0
- xcb-util=0.4.0=h166bdaf_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h166bdaf_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h166bdaf_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.4=h9c3ff4c_1
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
- pip:
- einops==0.5.0
- monai-weekly==1.1.dev2244
- nibabel==4.0.2
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- torch==1.13.0
- tqdm==4.64.1
prefix: /home/natitov/miniforge/envs/swin_unetr