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Specified the 'classic' solver when installing R requirements for clusterProfiler via anaconda.
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.github/workflows/build_docs.yml

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run: |
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source "$CONDA/etc/profile.d/conda.sh"
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conda activate ../test-env
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conda install -c conda-forge r-base r-essentials r-igraph r-ggraph r-ggforce r-scatterpie rpy2 r-biocmanager r-splines2
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conda install -c bioconda bioconductor-ggtree bioconductor-enrichplot
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conda install -c conda-forge r-base r-essentials r-igraph r-ggraph r-ggforce r-scatterpie rpy2 r-biocmanager r-splines2 --solver classic
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conda install -c bioconda bioconductor-ggtree bioconductor-enrichplot --solver classic
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- name: Install clusterProfiler package
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working-directory: ${{ github.workspace }}/main

.github/workflows/test_docs.yml

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -72,8 +72,8 @@ jobs:
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run: |
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source "$CONDA/etc/profile.d/conda.sh"
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conda activate ../test-env
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conda install -c conda-forge r-base r-essentials r-igraph r-ggraph r-ggforce r-scatterpie rpy2 r-biocmanager r-splines2
76-
conda install -c bioconda bioconductor-ggtree bioconductor-enrichplot
75+
conda install -c conda-forge r-base r-essentials r-igraph r-ggraph r-ggforce r-scatterpie rpy2 r-biocmanager r-splines2 --solver classic
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conda install -c bioconda bioconductor-ggtree bioconductor-enrichplot --solver classic
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- name: Install clusterProfiler package
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working-directory: ${{ github.workspace }}/main

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