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I am trying to use CAFE_fig to visualize the results from CAFE, but I encountered some problems.
Here is my running: python3 ./CAFE_fig-master/CAFE_fig.py out.cafe
And these are output:
Traceback (most recent call last):
File "./CAFE_fig-master/CAFE_fig.py", line 520, in
main(**vars(args))
File "./CAFE_fig-master/CAFE_fig.py", line 461, in main
c = CAFE_fig(report_cafe, families, clades, pb, pf, dump, gfx_output_format, count_all_expansions)
File "./CAFE_fig-master/CAFE_fig.py", line 89, in init
self.parse_tree()
File "./CAFE_fig-master/CAFE_fig.py", line 163, in parse_tree
for family in self:
File "./CAFE_fig-master/CAFE_fig.py", line 334, in iter
yield Family(line, self)
File "./CAFE_fig-master/CAFE_fig.py", line 421, in init
self.pvalue = float(values[2])
ValueError: could not convert string to float: '((Smoellendorffii_1:364.624,(Athaliana_5:314.68,(Earvense_6:251.574,(Dchinensis_2:209.164,(Afokiensis_7:179.207,(((LW_3:55.6774,ZXDS_1:55.6774)_2:46.7325,RS119_1:102.41)_2:39.5235,(Pnudum_4:42.3447,Ttannensis_4:42.3447)_4:99.5887)_3:37.2738)_3:29.9567)_3:42.4098)_3:63.1059)_3:49.944)_3:29.8768,Pp_4:394.5)_3'
Could you help with this? I appreciate your help. Thanks!
Xia
The text was updated successfully, but these errors were encountered:
Hi LKremer
I am trying to use CAFE_fig to visualize the results from CAFE, but I encountered some problems.
Here is my running: python3 ./CAFE_fig-master/CAFE_fig.py out.cafe
And these are output:
Traceback (most recent call last):
File "./CAFE_fig-master/CAFE_fig.py", line 520, in
main(**vars(args))
File "./CAFE_fig-master/CAFE_fig.py", line 461, in main
c = CAFE_fig(report_cafe, families, clades, pb, pf, dump, gfx_output_format, count_all_expansions)
File "./CAFE_fig-master/CAFE_fig.py", line 89, in init
self.parse_tree()
File "./CAFE_fig-master/CAFE_fig.py", line 163, in parse_tree
for family in self:
File "./CAFE_fig-master/CAFE_fig.py", line 334, in iter
yield Family(line, self)
File "./CAFE_fig-master/CAFE_fig.py", line 421, in init
self.pvalue = float(values[2])
ValueError: could not convert string to float: '((Smoellendorffii_1:364.624,(Athaliana_5:314.68,(Earvense_6:251.574,(Dchinensis_2:209.164,(Afokiensis_7:179.207,(((LW_3:55.6774,ZXDS_1:55.6774)_2:46.7325,RS119_1:102.41)_2:39.5235,(Pnudum_4:42.3447,Ttannensis_4:42.3447)_4:99.5887)_3:37.2738)_3:29.9567)_3:42.4098)_3:63.1059)_3:49.944)_3:29.8768,Pp_4:394.5)_3'
Could you help with this? I appreciate your help. Thanks!
Xia
The text was updated successfully, but these errors were encountered: