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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(All_Steps_Interface)
export(All_Steps_Interface_CMD)
export(CheckToolAll)
export(RNASeqDifferentialAnalysis)
export(RNASeqDifferentialAnalysis_CMD)
export(RNASeqEnvironmentSet)
export(RNASeqEnvironmentSet_CMD)
export(RNASeqGoKegg)
export(RNASeqGoKegg_CMD)
export(RNASeqQualityAssessment)
export(RNASeqQualityAssessment_CMD)
export(RNASeqRParam)
export(RNASeqRParam_Bam)
export(RNASeqRParam_Sam)
export(RNASeqReadProcess)
export(RNASeqReadProcess_CMD)
export(Update_Fastq_gz)
exportClasses(RNASeqRParam)
exportClasses(RNASeqRParam_Bam)
exportClasses(RNASeqRParam_Sam)
import(DOSE)
import(ggplot2)
import(grDevices)
import(graphics)
import(methods)
import(org.Hs.eg.db)
import(org.Sc.sgd.db)
import(utils)
importFrom(Biostrings,quality)
importFrom(Biostrings,width)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,counts)
importFrom(DESeq2,plotDispEsts)
importFrom(DESeq2,plotMA)
importFrom(DESeq2,results)
importFrom(FactoMineR,PCA)
importFrom(PerformanceAnalytics,chart.Correlation)
importFrom(Rsamtools,asBam)
importFrom(ballgown,ballgown)
importFrom(ballgown,gexpr)
importFrom(ballgown,indexes)
importFrom(ballgown,stattest)
importFrom(ballgown,texpr)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,cnetplot)
importFrom(clusterProfiler,dotplot)
importFrom(clusterProfiler,emapplot)
importFrom(clusterProfiler,enrichGO)
importFrom(clusterProfiler,enrichKEGG)
importFrom(clusterProfiler,goplot)
importFrom(clusterProfiler,groupGO)
importFrom(clusterProfiler,gseGO)
importFrom(clusterProfiler,gseKEGG)
importFrom(clusterProfiler,gseaplot)
importFrom(corrplot,corrplot)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(edgeR,estimateCommonDisp)
importFrom(edgeR,estimateTagwiseDisp)
importFrom(edgeR,exactTest)
importFrom(edgeR,plotBCV)
importFrom(edgeR,plotMDS.DGEList)
importFrom(edgeR,plotMeanVar)
importFrom(factoextra,fviz_eig)
importFrom(factoextra,fviz_pca_ind)
importFrom(factoextra,get_eigenvalue)
importFrom(gridExtra,grid.table)
importFrom(parallel,mcmapply)
importFrom(pathview,pathview)
importFrom(pheatmap,pheatmap)
importFrom(rafalib,mypar)
importFrom(reshape2,melt)
importFrom(reticulate,py_available)
importFrom(reticulate,py_config)
importFrom(stats,cor)
importFrom(stats,quantile)
importFrom(stats,t.test)
importFrom(stringr,str_extract)
importFrom(systemPipeR,infile1)
importFrom(systemPipeR,seeFastq)
importFrom(systemPipeR,seeFastqPlot)
importFrom(systemPipeR,systemArgs)
importFrom(systemPipeRdata,genWorkenvir)
importFrom(tools,file_ext)