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Extended SPAdes was created for low quality sequence read instead complete assembly #341

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timurrxxcd opened this issue Jul 31, 2024 · 2 comments

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@timurrxxcd
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@JianjunJin I encountered similar issue while assembling cp genome, but it's not because if version of SPAdes or python. I got only extended_1_paired.fq, extended_2_paired.fq, extended_1_unpaired.fq, extended_2_unpaired.fq files as result. I think it maybe due to sequencing (632 MB and 670 MB forward and reverse reads) process. do you think it is impossible to assemble it? here are log files:
spades.log
slim.log.txt
image

@JianjunJin
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Please attach the complete get_org.log.txt file

@timurrxxcd
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here is it:
get_org.log.txt

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