You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
On a local computer, the program runs fine, but when using the SGEsystem, the get_organelle_config.py script is unable to run regardless of whether the default path or a manually specified path is used for building the databases.
like this,
ERROR: default embplant_nr database not added yet!
Install it by: get_organelle_config.py -a embplant_nr
or
Install all types by: get_organelle_config.py -a all But in fact, these libraries have already been installed
(GetOrganelle) [xx@bogon raw]$get_organelle_config.py --update
Python 3.10.14 | packaged by conda-forge | (main, Mar 20 2024, 12:45:18) [GCC 12.3.0]
DEPENDENCIES: Bowtie2 failed.; Blast 2.15.0
WORKING DIR: /data/backup/gxl/2.data/plastid/raw
/data/backup/xx/3.software/miniconda3/envs/GetOrganelle/bin/get_organelle_config.py --update
On a local computer, the program runs fine, but when using the SGEsystem, the get_organelle_config.py script is unable to run regardless of whether the default path or a manually specified path is used for building the databases.
like this,
ERROR: default embplant_nr database not added yet!
Install it by: get_organelle_config.py -a embplant_nr
or
Install all types by: get_organelle_config.py -a all
But in fact, these libraries have already been installed
(GetOrganelle) [xx@bogon raw]$get_organelle_config.py --update
Python 3.10.14 | packaged by conda-forge | (main, Mar 20 2024, 12:45:18) [GCC 12.3.0]
DEPENDENCIES: Bowtie2 failed.; Blast 2.15.0
WORKING DIR: /data/backup/gxl/2.data/plastid/raw
/data/backup/xx/3.software/miniconda3/envs/GetOrganelle/bin/get_organelle_config.py --update
Existing databases(s):
embplant_nr Seed Database: 0.0.1
embplant_nr Label Database: 0.0.1
bowtie2-build embplant_nr.fasta ... skipped
makeblastdb embplant_nr.fasta ... skipped
Total cost: 1.77 s
The text was updated successfully, but these errors were encountered: