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Add unit tests

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on Apr 16, 2020

Create option for bamToCountmuts.py to output vcf of variants used to calculate frequencies

countmutsRelates to the countmuts fileRelates to the countmuts file

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#10 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· scottrk opened on Apr 18, 2020

Family size plot sometimes doesn't match summary file peak family size

Status: Open.

#4 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on Apr 2, 2020

Reliance on bash shell scripts is not necessarily cross platform compatible

enhancementNew feature or requestNew feature or request

Status: Open.

#3 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· scottrk opened on Apr 1, 2020

Add cloud compatibility

Status: Open.

#42 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on Jul 9, 2020

Pipeline occasionally crashes randomly

bugSomething isn't workingSomething isn't working

Status: Open.

#12 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on Apr 21, 2020

summary blast statistics unclear

Target 2.0.0

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#14 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· rrisques opened on Apr 21, 2020

clustering of C>A mutations in 5'

Status: Open.

#37 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· rrisques opened on May 16, 2020

Questions for the adapterSeq parameter

Status: Open.

#98 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· weiwsmiling opened on Jul 7, 2021

Scheduler errors on Mac OS X Sierra

bugSomething isn't workingSomething isn't working

Status: Open.

#95 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on Jun 21, 2021

Some types of ambiguous reads lacking further taxon codes

Status: Open.

#108 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on Feb 27, 2023

Some java steps sometimes run out of memory

Status: Open.

#110 In Kennedy-Lab-UW/Duplex-Seq-Pipeline;

· bkohrn opened on May 2, 2023