Reference

[serpei]

Hi,
I read in the "Examples" part "The bam file should be aligned based on GRCH38. ". It stands true for all analyses or just for the example you put? So, can I use also GRCH37 (if I aligned both RNA-seq and WES data on GRCH37)?
Also, I saw that in the sequenza.R script, hg19 is used as assembly. So, is there an error somewhere?
Kind regards,
Serena