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1.6.0-DEV-0669b64613.log
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Julia Version 1.6.0-DEV.1153
Commit 0669b64613 (2020-10-07 09:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Blosc_jll ────────── v1.14.3+1
Installed Libiconv_jll ─────── v1.16.0+6
Installed Zlib_jll ─────────── v1.2.11+16
Installed XML2_jll ─────────── v2.9.10+2
Installed Lz4_jll ──────────── v1.9.2+2
Installed TranscodingStreams ─ v0.9.5
Installed Trixi2Vtk ────────── v0.2.0
Installed WriteVTK ─────────── v1.7.3
Installed Blosc ────────────── v0.7.0
Installed Zstd_jll ─────────── v1.4.5+1
Installed CodecZlib ────────── v0.7.0
Installed FillArrays ───────── v0.9.6
Installed ProgressMeter ────── v1.4.0
Installed Glob ─────────────── v1.3.0
Installed HDF5 ─────────────── v0.13.6
Installed LightXML ─────────── v0.9.0
Installed StaticArrays ─────── v0.12.4
Installed TimerOutputs ─────── v0.5.6
Installed HDF5_jll ─────────── v1.10.5+6
Updating `~/.julia/environments/v1.6/Project.toml`
[bc1476a1] + Trixi2Vtk v0.2.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[a74b3585] + Blosc v0.7.0
[0b7ba130] + Blosc_jll v1.14.3+1
[944b1d66] + CodecZlib v0.7.0
[1a297f60] + FillArrays v0.9.6
[c27321d9] + Glob v1.3.0
[f67ccb44] + HDF5 v0.13.6
[0234f1f7] + HDF5_jll v1.10.5+6
[94ce4f54] + Libiconv_jll v1.16.0+6
[9c8b4983] + LightXML v0.9.0
[5ced341a] + Lz4_jll v1.9.2+2
[92933f4c] + ProgressMeter v1.4.0
[90137ffa] + StaticArrays v0.12.4
[a759f4b9] + TimerOutputs v0.5.6
[3bb67fe8] + TranscodingStreams v0.9.5
[bc1476a1] + Trixi2Vtk v0.2.0
[64499a7a] + WriteVTK v1.7.3
[02c8fc9c] + XML2_jll v2.9.10+2
[83775a58] + Zlib_jll v1.2.11+16
[3161d3a3] + Zstd_jll v1.4.5+1
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0713cbabdf855852dfab3ce6447c87145f3d9ea8/build.log`
Testing Trixi2Vtk
Status `/tmp/jl_o4V8v0/Project.toml`
[a7f1ee26] Trixi v0.2.5
[bc1476a1] Trixi2Vtk v0.2.0
[ea8e919c] SHA
[8dfed614] Test
Status `/tmp/jl_o4V8v0/Manifest.toml`
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[944b1d66] CodecZlib v0.7.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] CpuId v0.2.2
[b552c78f] DiffRules v1.0.1
[ffbed154] DocStringExtensions v0.8.3
[da5c29d0] EllipsisNotation v0.4.0
[1a297f60] FillArrays v0.9.6
[c27321d9] Glob v1.3.0
[f67ccb44] HDF5 v0.13.6
[0234f1f7] HDF5_jll v1.10.5+6
[94ce4f54] Libiconv_jll v1.16.0+6
[9c8b4983] LightXML v0.9.0
[7a12625a] LinearMaps v2.7.0
[bdcacae8] LoopVectorization v0.8.26
[5ced341a] Lz4_jll v1.9.2+2
[77ba4419] NaNMath v0.3.4
[6fe1bfb0] OffsetArrays v1.3.0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[92933f4c] ProgressMeter v1.4.0
[ae029012] Requires v1.1.0
[21efa798] SIMDPirates v0.8.25
[476501e8] SLEEFPirates v0.5.5
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[a759f4b9] TimerOutputs v0.5.6
[3bb67fe8] TranscodingStreams v0.9.5
[a7f1ee26] Trixi v0.2.5
[bc1476a1] Trixi2Vtk v0.2.0
[bc48ee85] Tullio v0.2.7
[3a884ed6] UnPack v1.0.2
[3d5dd08c] VectorizationBase v0.12.33
[64499a7a] WriteVTK v1.7.3
[02c8fc9c] XML2_jll v2.9.10+2
[83775a58] Zlib_jll v1.2.11+16
[3161d3a3] Zstd_jll v1.4.5+1
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
████████╗██████╗ ██╗██╗ ██╗██╗
╚══██╔══╝██╔══██╗██║╚██╗██╔╝██║
██║ ██████╔╝██║ ╚███╔╝ ██║
██║ ██╔══██╗██║ ██╔██╗ ██║
██║ ██║ ██║██║██╔╝ ██╗██║
╚═╝ ╚═╝ ╚═╝╚═╝╚═╝ ╚═╝╚═╝
Creating mesh... done
Initializing system of equations... done
Initializing solver... done
Applying initial conditions... done
| Simulation setup
| ----------------
| working directory: /home/pkgeval/.julia/packages/Trixi2Vtk/KwLMI/test
| parameters file: /home/pkgeval/.julia/packages/Trixi/g36s2/examples/2d/parameters.toml
| equations: LinearScalarAdvectionEquation2D
| | #variables: 1
| | variable names: scalar
| sources: none
| restart: no
| initial conditions: initial_conditions_convergence_test
| t_start: 0.0
| t_end: 1.0
| AMR: no
| n_steps_max: 1
| time integration: timestep_carpenter_kennedy_erk54_2N!
| restart interval: 10
| solution interval: 100
| #parallel threads: 2
|
| Solver
| | solver: dg
| | polydeg: 3
| | CFL: 0.8
| | volume integral: weak_form
| | volume flux: flux_central
| | surface flux: flux_lax_friedrichs
| | #elements: 256
| | #interfaces: 512
| | #boundaries: 0
| | #l2mortars: 0
| | #DOFs: 4096
|
| Mesh
| | #cells: 341
| | #leaf cells: 256
| | minimum level: 4
| | maximum level: 4
| | domain center: 0.0, 0.0
| | domain length: 2.0
| | minimum dx: 0.125
| | maximum dx: 0.125
--------------------------------------------------------------------------------
Simulation running 'LinearScalarAdvectionEquation2D' with POLYDEG = 3
--------------------------------------------------------------------------------
#timesteps: 0 run time: 0.00000000e+00 s
dt: 0.00000000e+00 Time/DOF/step: 0.00000000e+00 s
sim. time: 0.00000000e+00
Variable: scalar
2D: Error During Test at /home/pkgeval/.julia/packages/Trixi2Vtk/KwLMI/test/test_2d.jl:13
Got exception outside of a @test
Module IR does not contain specified entry function
Stacktrace:
[1] assume
@ ~/.julia/packages/SIMDPirates/EVSvY/src/llvm_utils.jl:308 [inlined]
[2] macro expansion
@ ~/.julia/packages/LoopVectorization/pHMnJ/src/reconstruct_loopset.jl:503 [inlined]
[3] _avx_!(::Val{(0, 0, -1, 4)}, ::Type{Tuple{:LoopVectorization, :LOOPCONSTANTINSTRUCTION, LoopVectorization.OperationStruct(0x0000000000000000, 0x0000000000000000, 0x0000000000000000, 0x0000000000000000, LoopVectorization.constant, 0x00, 0x01), Symbol(""), :isnothing, LoopVectorization.OperationStruct(0x0000000000000000, 0x0000000000000000, 0x0000000000000000, 0x0000000000000001, LoopVectorization.compute, 0x00, 0x02), :numericconstant, Symbol("##zero#307"), LoopVectorization.OperationStruct(0x0000000000000123, 0x0000000000000000, 0x0000000000000000, 0x0000000000000000, LoopVectorization.constant, 0x00, 0x03), :LoopVectorization, :conditionalload, LoopVectorization.OperationStruct(0x0000000000000321, 0x0000000000000000, 0x0000000000000000, 0x0000000000000005, LoopVectorization.memload, 0x01, 0x04), :LoopVectorization, :~, LoopVectorization.OperationStruct(0x0000000000000000, 0x0000000000000000, 0x0000000000000000, 0x0000000000000002, LoopVectorization.compute, 0x00, 0x05), :LoopVectorization, :vifelse, LoopVectorization.OperationStruct(0x0000000000000123, 0x0000000000000000, 0x0000000000000000, 0x0000000000020304, LoopVectorization.compute, 0x00, 0x06), :LoopVectorization, :getindex, LoopVectorization.OperationStruct(0x0000000000000024, 0x0000000000000000, 0x0000000000000000, 0x0000000000000000, LoopVectorization.memload, 0x02, 0x07), :LoopVectorization, :getindex, LoopVectorization.OperationStruct(0x0000000000000341, 0x0000000000000000, 0x0000000000000000, 0x0000000000000000, LoopVectorization.memload, 0x03, 0x08), :numericconstant, Symbol("##reductzero#316"), LoopVectorization.OperationStruct(0x0000000000000123, 0x0000000000000000, 0x0000000000000004, 0x0000000000000000, LoopVectorization.constant, 0x00, 0x09), :LoopVectorization, :vfmadd_fast, LoopVectorization.OperationStruct(0x0000000000002431, 0x0000000000000004, 0x0000000000000000, 0x0000000000070809, LoopVectorization.compute, 0x00, 0x09), :LoopVectorization, :reduced_add, LoopVectorization.OperationStruct(0x0000000000000123, 0x0000000000000004, 0x0000000000000000, 0x0000000000000a06, LoopVectorization.compute, 0x00, 0x06), :LoopVectorization, :setindex!, LoopVectorization.OperationStruct(0x0000000000000321, 0x0000000000000000, 0x0000000000000000, 0x000000000000000b, LoopVectorization.memstore, 0x01, 0x0a)}}, ::Type{Tuple{LoopVectorization.ArrayRefStruct{:ℛ, Symbol("##vptr##_ℛ")}(0x0000000000010101, 0x0000000000030201, 0x0000000000000000), LoopVectorization.ArrayRefStruct{:matrix, Symbol("##vptr##_matrix")}(0x0000000000000101, 0x0000000000000204, 0x0000000000000000), LoopVectorization.ArrayRefStruct{:data_in, Symbol("##vptr##_data_in")}(0x0000000000010101, 0x0000000000030401, 0x0000000000000000)}}, ::Type{Tuple{0, Tuple{}, Tuple{1}, Tuple{}, Tuple{}, Tuple{(3, LoopVectorization.IntOrFloat), (9, LoopVectorization.IntOrFloat)}, Tuple{}}}, ::Type{Tuple{:j, :i, :v, :ii}}, ::NTuple{4, VectorizationBase.StaticLowerUnitRange{1}}, ::VectorizationBase.PackedStridedPointer{Float64, 2}, ::VectorizationBase.PackedStridedPointer{Float64, 1}, ::VectorizationBase.PackedStridedPointer{Float64, 2}, ::Nothing, ::typeof(isnothing))
@ LoopVectorization ~/.julia/packages/LoopVectorization/pHMnJ/src/reconstruct_loopset.jl:503
[4] 𝒜𝒸𝓉!
@ ~/.julia/packages/Tullio/Lpgd1/src/macro.jl:1082 [inlined]
[5] 𝒜𝒸𝓉!
@ ~/.julia/packages/Tullio/Lpgd1/src/macro.jl:1079 [inlined]
[6] threader
@ ~/.julia/packages/Tullio/Lpgd1/src/threads.jl:48 [inlined]
[7] macro expansion
@ ~/.julia/packages/Tullio/Lpgd1/src/macro.jl:994 [inlined]
[8] multiply_dimensionwise!(data_out::Array{Float64, 3}, matrix::Matrix{Float64}, data_in::SubArray{Float64, 3, Array{Float64, 4}, Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}, true}, tmp1::Array{Float64, 3})
@ Trixi ~/.julia/packages/Trixi/g36s2/src/solvers/dg/interpolation.jl:127
[9] calc_error_norms(func::typeof(Trixi.cons2cons), dg::Trixi.Dg2D{Trixi.LinearScalarAdvectionEquation2D, 1, 3, typeof(Trixi.flux_lax_friedrichs), typeof(Trixi.flux_central), typeof(Trixi.initial_conditions_convergence_test), Nothing, NTuple{4, Nothing}, Val{:l2}, Val{:weak_form}, typeof(Trixi.density_pressure), StaticArrays.SVector{4, Float64}, StaticArrays.SMatrix{4, 4, Float64, 16}, StaticArrays.SMatrix{4, 2, Float64, 8}, Matrix{Float64}, StaticArrays.SMatrix{4, 4, Float64, 16}, StaticArrays.SVector{8, Float64}, Matrix{Float64}}, t::Float64)
@ Trixi ~/.julia/packages/Trixi/g36s2/src/solvers/dg/2d/dg.jl:787
[10] calc_error_norms
@ ~/.julia/packages/Trixi/g36s2/src/solvers/solvers.jl:58 [inlined]
[11] analyze_solution(dg::Trixi.Dg2D{Trixi.LinearScalarAdvectionEquation2D, 1, 3, typeof(Trixi.flux_lax_friedrichs), typeof(Trixi.flux_central), typeof(Trixi.initial_conditions_convergence_test), Nothing, NTuple{4, Nothing}, Val{:l2}, Val{:weak_form}, typeof(Trixi.density_pressure), StaticArrays.SVector{4, Float64}, StaticArrays.SMatrix{4, 4, Float64, 16}, StaticArrays.SMatrix{4, 2, Float64, 8}, Matrix{Float64}, StaticArrays.SMatrix{4, 4, Float64, 16}, StaticArrays.SVector{8, Float64}, Matrix{Float64}}, mesh::Trixi.TreeMesh{2}, time::Float64, dt::Int64, step::Int64, runtime_absolute::Int64, runtime_relative::Int64; solver_gravity::Nothing)
@ Trixi ~/.julia/packages/Trixi/g36s2/src/solvers/dg/2d/dg.jl:925
[12] analyze_solution(dg::Trixi.Dg2D{Trixi.LinearScalarAdvectionEquation2D, 1, 3, typeof(Trixi.flux_lax_friedrichs), typeof(Trixi.flux_central), typeof(Trixi.initial_conditions_convergence_test), Nothing, NTuple{4, Nothing}, Val{:l2}, Val{:weak_form}, typeof(Trixi.density_pressure), StaticArrays.SVector{4, Float64}, StaticArrays.SMatrix{4, 4, Float64, 16}, StaticArrays.SMatrix{4, 2, Float64, 8}, Matrix{Float64}, StaticArrays.SMatrix{4, 4, Float64, 16}, StaticArrays.SVector{8, Float64}, Matrix{Float64}}, mesh::Trixi.TreeMesh{2}, time::Float64, dt::Int64, step::Int64, runtime_absolute::Int64, runtime_relative::Int64)
@ Trixi ~/.julia/packages/Trixi/g36s2/src/solvers/dg/2d/dg.jl:873
[13] init_simulation()
@ Trixi ~/.julia/packages/Trixi/g36s2/src/run.jl:250
[14] run(parameters_file::String; verbose::Bool, refinement_level_increment::Int64, parameters::Base.Iterators.Pairs{Symbol, Int64, Tuple{Symbol}, NamedTuple{(:n_steps_max,), Tuple{Int64}}})
@ Trixi ~/.julia/packages/Trixi/g36s2/src/run.jl:44
[15] #3
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:664 [inlined]
[16] redirect_stderr(f::Main.Test2D.var"#3#5"{Base.Iterators.Pairs{Symbol, Int64, Tuple{Symbol}, NamedTuple{(:n_steps_max,), Tuple{Int64}}}, String}, stream::IOStream)
@ Base ./stream.jl:1224
[17] #2
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:663 [inlined]
[18] open(::Main.Test2D.var"#2#4"{Base.Iterators.Pairs{Symbol, Int64, Tuple{Symbol}, NamedTuple{(:n_steps_max,), Tuple{Int64}}}, String}, ::String, ::Vararg{String, N} where N; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base ./io.jl:330
[19] open
@ ./io.jl:328 [inlined]
[20] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:662 [inlined]
[21] run_trixi(parameters_file::String; parameters::Base.Iterators.Pairs{Symbol, Int64, Tuple{Symbol}, NamedTuple{(:n_steps_max,), Tuple{Int64}}})
@ Main.Test2D ~/.julia/packages/Trixi2Vtk/KwLMI/test/test_trixi2vtk.jl:11
[22] top-level scope
@ ~/.julia/packages/Trixi2Vtk/KwLMI/test/test_2d.jl:14
[23] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[24] top-level scope
@ ~/.julia/packages/Trixi2Vtk/KwLMI/test/test_2d.jl:14
[25] include(fname::String)
@ Base.MainInclude ./client.jl:444
[26] top-level scope
@ ~/.julia/packages/Trixi2Vtk/KwLMI/test/runtests.jl:1
[27] include(fname::String)
@ Base.MainInclude ./client.jl:444
[28] top-level scope
@ none:6
[29] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[30] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[31] _start()
@ Base ./client.jl:485
Test Summary: | Error Total
2D | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Trixi2Vtk/KwLMI/test/test_2d.jl:1
in expression starting at /home/pkgeval/.julia/packages/Trixi2Vtk/KwLMI/test/runtests.jl:1
ERROR: Package Trixi2Vtk errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19