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1.6.0-DEV-0669b64613.log
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Julia Version 1.6.0-DEV.1153
Commit 0669b64613 (2020-10-07 09:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Opus_jll ───────────────────── v1.3.1+2
Installed SortingAlgorithms ──────────── v0.3.1
Installed MKL_jll ────────────────────── v2020.2.254+0
Installed ConstructionBase ───────────── v1.0.0
Installed Tables ─────────────────────── v1.1.0
Installed Jags ───────────────────────── v3.0.5
Installed Latexify ───────────────────── v0.14.0
Installed Documenter ─────────────────── v0.25.2
Installed NaNMath ────────────────────── v0.3.4
Installed DataAPI ────────────────────── v1.3.0
Installed SentinelArrays ─────────────── v1.2.16
Installed Compat ─────────────────────── v3.18.0
Installed GeometryBasics ─────────────── v0.3.3
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Arpack ─────────────────────── v0.4.0
Installed FFMPEG_jll ─────────────────── v4.3.1+2
Installed MbedTLS ────────────────────── v1.0.2
Installed FillArrays ─────────────────── v0.9.6
Installed libvorbis_jll ──────────────── v1.3.6+5
Installed Rmath ──────────────────────── v0.6.1
Installed OrderedCollections ─────────── v1.3.1
Installed Parsers ────────────────────── v1.0.11
Installed libfdk_aac_jll ─────────────── v0.1.6+3
Installed LoggingExtras ──────────────── v0.4.2
Installed KernelDensity ──────────────── v0.6.0
Installed SpecialFunctions ───────────── v0.10.3
Installed NaturalSort ────────────────── v1.0.0
Installed BangBang ───────────────────── v0.3.29
Installed OpenSSL_jll ────────────────── v1.1.1+5
Installed StructTypes ────────────────── v1.1.0
Installed libass_jll ─────────────────── v0.14.0+3
Installed AbstractFFTs ───────────────── v0.5.0
Installed Showoff ────────────────────── v0.3.2
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed FriBidi_jll ────────────────── v1.0.5+5
Installed ArgCheck ───────────────────── v2.1.0
Installed Observables ────────────────── v0.3.2
Installed Zlib_jll ───────────────────── v1.2.11+16
Installed FixedPointNumbers ──────────── v0.8.4
Installed EllipsisNotation ───────────── v0.4.0
Installed SplittablesBase ────────────── v0.1.10
Installed IteratorInterfaceExtensions ── v1.0.0
Installed IntervalSets ───────────────── v0.5.1
Installed Reexport ───────────────────── v0.2.0
Installed Formatting ─────────────────── v0.4.1
Installed Colors ─────────────────────── v0.12.4
Installed DataStructures ─────────────── v0.18.7
Installed EarCut_jll ─────────────────── v2.1.5+0
Installed StatsPlots ─────────────────── v0.14.13
Installed AxisAlgorithms ─────────────── v1.0.0
Installed QuadGK ─────────────────────── v2.4.1
Installed Transducers ────────────────── v0.4.51
Installed Contour ────────────────────── v0.5.5
Installed JSON ───────────────────────── v0.21.1
Installed Clustering ─────────────────── v0.14.1
Installed Interpolations ─────────────── v0.12.10
Installed Adapt ──────────────────────── v2.3.0
Installed InvertedIndices ────────────── v1.0.0
Installed ZygoteRules ────────────────── v0.2.0
Installed Bzip2_jll ──────────────────── v1.0.6+4
Installed OffsetArrays ───────────────── v1.3.0
Installed FFTW ───────────────────────── v1.2.4
Installed UnPack ─────────────────────── v1.0.2
Installed DataValues ─────────────────── v0.4.13
Installed InitialValues ──────────────── v0.2.10
Installed Ogg_jll ────────────────────── v1.3.4+1
Installed PDMats ─────────────────────── v0.10.1
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Parameters ─────────────────── v0.12.1
Installed Distributions ──────────────── v0.23.12
Installed FreeType2_jll ──────────────── v2.10.1+4
Installed RecipesBase ────────────────── v1.1.0
Installed NearestNeighbors ───────────── v0.4.6
Installed AbstractTrees ──────────────── v0.3.3
Installed Measures ───────────────────── v0.3.1
Installed AbstractMCMC ───────────────── v2.1.0
Installed IterTools ──────────────────── v1.3.0
Installed LibVPX_jll ─────────────────── v1.9.0+0
Installed ColorTypes ─────────────────── v0.10.9
Installed DefineSingletons ───────────── v0.1.0
Installed Grisu ──────────────────────── v1.0.0
Installed x264_jll ───────────────────── v2020.7.14+1
Installed ProgressLogging ────────────── v0.1.3
Installed RangeArrays ────────────────── v0.3.2
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed FFMPEG ─────────────────────── v0.4.0
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed StaticArrays ───────────────── v0.12.4
Installed PlotThemes ─────────────────── v2.0.0
Installed AxisArrays ─────────────────── v0.4.3
Installed PrettyTables ───────────────── v0.9.1
Installed OpenBLAS_jll ───────────────── v0.3.10+0
Installed Distances ──────────────────── v0.9.2
Installed Ratios ─────────────────────── v0.4.0
Installed DocStringExtensions ────────── v0.8.3
Installed Setfield ───────────────────── v0.7.0
Installed TerminalLoggers ────────────── v0.1.2
Installed DataFrames ─────────────────── v0.21.7
Installed x265_jll ───────────────────── v3.0.0+2
Installed MLJModelInterface ──────────── v0.3.5
Installed Widgets ────────────────────── v0.6.2
Installed MultivariateStats ──────────── v0.7.0
Installed IniFile ────────────────────── v0.5.0
Installed StructArrays ───────────────── v0.4.4
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed MCMCChains ─────────────────── v4.2.2
Installed StatsBase ──────────────────── v0.33.1
Installed LAME_jll ───────────────────── v3.100.0+2
Installed CompositionsBase ───────────── v0.1.0
Installed CategoricalArrays ──────────── v0.8.3
Installed MacroTools ─────────────────── v0.5.5
Installed PooledArrays ───────────────── v0.5.3
Installed Plots ──────────────────────── v1.6.9
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed ScientificTypes ────────────── v1.1.0
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed Missings ───────────────────── v0.4.4
Installed WoodburyMatrices ───────────── v0.5.2
Installed ProgressMeter ──────────────── v1.4.0
Installed MbedTLS_jll ────────────────── v2.16.8+0
Installed PlotUtils ──────────────────── v1.0.7
Installed GeometryTypes ──────────────── v0.8.3
Installed DataValueInterfaces ────────── v1.0.0
Installed LaTeXStrings ───────────────── v1.2.0
Installed HTTP ───────────────────────── v0.8.19
Installed TableOperations ────────────── v0.2.1
Installed TableTraits ────────────────── v1.0.0
Installed GR ─────────────────────────── v0.52.0
Installed StatsFuns ──────────────────── v0.9.5
Installed Requires ───────────────────── v1.1.0
Installed Crayons ────────────────────── v4.0.4
Installed RecipesPipeline ────────────── v0.1.13
Installed ColorSchemes ───────────────── v3.10.1
Installed CSV ────────────────────────── v0.7.7
Updating `~/.julia/environments/v1.6/Project.toml`
[7de783dc] + Jags v3.0.5
Updating `~/.julia/environments/v1.6/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v2.1.0
[1520ce14] + AbstractTrees v0.3.3
[79e6a3ab] + Adapt v2.3.0
[dce04be8] + ArgCheck v2.1.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.4.3
[198e06fe] + BangBang v0.3.29
[6e34b625] + Bzip2_jll v1.0.6+4
[336ed68f] + CSV v0.7.7
[324d7699] + CategoricalArrays v0.8.3
[aaaa29a8] + Clustering v0.14.1
[35d6a980] + ColorSchemes v3.10.1
[3da002f7] + ColorTypes v0.10.9
[5ae59095] + Colors v0.12.4
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[a33af91c] + CompositionsBase v0.1.0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[187b0558] + ConstructionBase v1.0.0
[d38c429a] + Contour v0.5.5
[a8cc5b0e] + Crayons v4.0.4
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.7
[864edb3b] + DataStructures v0.18.7
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.13
[244e2a9f] + DefineSingletons v0.1.0
[b4f34e82] + Distances v0.9.2
[31c24e10] + Distributions v0.23.12
[ffbed154] + DocStringExtensions v0.8.3
[e30172f5] + Documenter v0.25.2
[5ae413db] + EarCut_jll v2.1.5+0
[da5c29d0] + EllipsisNotation v0.4.0
[c87230d0] + FFMPEG v0.4.0
[b22a6f82] + FFMPEG_jll v4.3.1+2
[7a1cc6ca] + FFTW v1.2.4
[f5851436] + FFTW_jll v3.3.9+5
[1a297f60] + FillArrays v0.9.6
[53c48c17] + FixedPointNumbers v0.8.4
[59287772] + Formatting v0.4.1
[d7e528f0] + FreeType2_jll v2.10.1+4
[559328eb] + FriBidi_jll v1.0.5+5
[28b8d3ca] + GR v0.52.0
[5c1252a2] + GeometryBasics v0.3.3
[4d00f742] + GeometryTypes v0.8.3
[42e2da0e] + Grisu v1.0.0
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[22cec73e] + InitialValues v0.2.10
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.10
[8197267c] + IntervalSets v0.5.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[7de783dc] + Jags v3.0.5
[5ab0869b] + KernelDensity v0.6.0
[c1c5ebd0] + LAME_jll v3.100.0+2
[b964fa9f] + LaTeXStrings v1.2.0
[23fbe1c1] + Latexify v0.14.0
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[dd192d2f] + LibVPX_jll v1.9.0+0
[e6f89c97] + LoggingExtras v0.4.2
[c7f686f2] + MCMCChains v4.2.2
[856f044c] + MKL_jll v2020.2.254+0
[e80e1ace] + MLJModelInterface v0.3.5
[1914dd2f] + MacroTools v0.5.5
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[442fdcdd] + Measures v0.3.1
[e1d29d7a] + Missings v0.4.4
[6f286f6a] + MultivariateStats v0.7.0
[77ba4419] + NaNMath v0.3.4
[c020b1a1] + NaturalSort v1.0.0
[b8a86587] + NearestNeighbors v0.4.6
[510215fc] + Observables v0.3.2
[6fe1bfb0] + OffsetArrays v1.3.0
[e7412a2a] + Ogg_jll v1.3.4+1
[4536629a] + OpenBLAS_jll v0.3.10+0
[458c3c95] + OpenSSL_jll v1.1.1+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[91d4177d] + Opus_jll v1.3.1+2
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.11
[ccf2f8ad] + PlotThemes v2.0.0
[995b91a9] + PlotUtils v1.0.7
[91a5bcdd] + Plots v1.6.9
[2dfb63ee] + PooledArrays v0.5.3
[08abe8d2] + PrettyTables v0.9.1
[33c8b6b6] + ProgressLogging v0.1.3
[92933f4c] + ProgressMeter v1.4.0
[1fd47b50] + QuadGK v2.4.1
[b3c3ace0] + RangeArrays v0.3.2
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v1.1.0
[01d81517] + RecipesPipeline v0.1.13
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.1.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[321657f4] + ScientificTypes v1.1.0
[91c51154] + SentinelArrays v1.2.16
[efcf1570] + Setfield v0.7.0
[992d4aef] + Showoff v0.3.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[171d559e] + SplittablesBase v0.1.10
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[f3b207a7] + StatsPlots v0.14.13
[09ab397b] + StructArrays v0.4.4
[856f2bd8] + StructTypes v1.1.0
[ab02a1b2] + TableOperations v0.2.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[5d786b92] + TerminalLoggers v0.1.2
[28d57a85] + Transducers v0.4.51
[3a884ed6] + UnPack v1.0.2
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.5.2
[83775a58] + Zlib_jll v1.2.11+16
[700de1a5] + ZygoteRules v0.2.0
[0ac62f75] + libass_jll v0.14.0+3
[f638f0a6] + libfdk_aac_jll v0.1.6+3
[f27f6e37] + libvorbis_jll v1.3.6+5
[1270edf5] + x264_jll v2020.7.14+1
[dfaa095f] + x265_jll v3.0.0+2
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building FFTW → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8b7c16b56936047ca41bf25effa137ae0b381ae8/build.log`
Building GR ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/cd0f34bd097d4d5eb6bbe01778cf8a7ed35f29d9/build.log`
Testing Jags
Status `/tmp/jl_35xOwY/Project.toml`
[34da2185] Compat v3.18.0
[7de783dc] Jags v3.0.5
[f3b207a7] StatsPlots v0.14.13
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_35xOwY/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[80f14c24] AbstractMCMC v2.1.0
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v2.3.0
[dce04be8] ArgCheck v2.1.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.4.3
[198e06fe] BangBang v0.3.29
[6e34b625] Bzip2_jll v1.0.6+4
[336ed68f] CSV v0.7.7
[324d7699] CategoricalArrays v0.8.3
[aaaa29a8] Clustering v0.14.1
[35d6a980] ColorSchemes v3.10.1
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[a33af91c] CompositionsBase v0.1.0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.0.0
[d38c429a] Contour v0.5.5
[a8cc5b0e] Crayons v4.0.4
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.18.7
[e2d170a0] DataValueInterfaces v1.0.0
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Testing Running tests...
Running tests for Jags-j1.5-v3.0
Environment variable JAGS_HOME not found. Use set_jags_home!.
Run execution_tests only if Jags is available
* test_cmd.jl *
tmpdir = "/home/pkgeval/.julia/packages/Jags/hzgNR/test/tmp"
File /home/pkgeval/.julia/packages/Jags/hzgNR/test/tmp/line1.bugs will be updated.
File /home/pkgeval/.julia/packages/Jags/hzgNR/test/tmp/line1-cmd1.jags will be updated.
Jagsmodel that will be used:
name = "line1"
ncommands = 1
nchains = 4
adapt = 1000
nsamples = 10000
thin = 1
jagsthin = 1
monitor = Dict{String, Bool}("sigma" => 1, "alpha" => 1, "tau" => 1, "beta" => 1)
deviance = true
dic = true
popt = true
model_file = line1.bugs
data_file = line1-data.R
tmpdir = /home/pkgeval/.julia/packages/Jags/hzgNR/test/tmp
Input observed data dictionary:
Dict{String, Any} with 3 entries:
"n" => 5
"x" => [1, 2, 3, 4, 5]
"y" => [1, 3, 3, 3, 5]
Input initial values dictionary:
4-element Vector{Dict{String, Any}}:
Dict("alpha" => 0, "tau" => 1, "beta" => 0)
Dict("alpha" => 1, "tau" => 1, "beta" => 2)
Dict("alpha" => 3, "tau" => 2, "beta" => 3)
Dict("alpha" => 5, "tau" => 5, "beta" => 2)
JAGS_HOME not found.
Skipping all tests that depend on the Jags executable!
Testing Jags tests passed