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1.6.0-DEV-0669b64613.log
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Julia Version 1.6.0-DEV.1153
Commit 0669b64613 (2020-10-07 09:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ──────────── v0.3.1
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Compat ─────────────────────── v3.18.0
Installed DataAPI ────────────────────── v1.3.0
Installed StatsModels ────────────────── v0.6.15
Installed Tables ─────────────────────── v1.1.0
Installed GLM ────────────────────────── v1.3.10
Installed Distributions ──────────────── v0.23.12
Installed PDMats ─────────────────────── v0.10.1
Installed IteratorInterfaceExtensions ── v1.0.0
Installed StatsBase ──────────────────── v0.33.1
Installed ShiftedArrays ──────────────── v1.0.0
Installed Reexport ───────────────────── v0.2.0
Installed OrderedCollections ─────────── v1.3.1
Installed FillArrays ─────────────────── v0.9.6
Installed Missings ───────────────────── v0.4.4
Installed DataStructures ─────────────── v0.18.7
Installed Rmath ──────────────────────── v0.6.1
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed QuadGK ─────────────────────── v2.4.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DataValueInterfaces ────────── v1.0.0
Installed TableTraits ────────────────── v1.0.0
Installed SpecialFunctions ───────────── v0.10.3
Installed StatsFuns ──────────────────── v0.9.5
Installed StaticArrays ───────────────── v0.12.4
Updating `~/.julia/environments/v1.6/Project.toml`
[38e38edf] + GLM v1.3.10
Updating `~/.julia/environments/v1.6/Manifest.toml`
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.18.7
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.12
[1a297f60] + FillArrays v0.9.6
[38e38edf] + GLM v1.3.10
[82899510] + IteratorInterfaceExtensions v1.0.0
[e1d29d7a] + Missings v0.4.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[1fd47b50] + QuadGK v2.4.1
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[1277b4bf] + ShiftedArrays v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[3eaba693] + StatsModels v0.6.15
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing GLM
Status `/tmp/jl_kF57P0/Project.toml`
[336ed68f] CSV v0.6.1
[324d7699] CategoricalArrays v0.7.7
[a93c6f00] DataFrames v0.20.2
[31c24e10] Distributions v0.23.12
[38e38edf] GLM v1.3.10
[ce6b1742] RDatasets v0.6.10
[189a3867] Reexport v0.2.0
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[3eaba693] StatsModels v0.6.15
[37e2e46d] LinearAlgebra
[de0858da] Printf
[9a3f8284] Random
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_kF57P0/Manifest.toml`
[b99e7846] BinaryProvider v0.5.10
[336ed68f] CSV v0.6.1
[324d7699] CategoricalArrays v0.7.7
[944b1d66] CodecZlib v0.6.0
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.18.7
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.12
[e2ba6199] ExprTools v0.1.2
[8f5d6c58] EzXML v1.1.0
[5789e2e9] FileIO v1.4.3
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.9.6
[38e38edf] GLM v1.3.10
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[94ce4f54] Libiconv_jll v1.16.0+6
[e1d29d7a] Missings v0.4.4
[78c3b35d] Mocking v0.7.1
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.10.1
[69de0a69] Parsers v1.0.11
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.4.1
[df47a6cb] RData v0.7.1
[ce6b1742] RDatasets v0.6.10
[3cdcf5f2] RecipesBase v1.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[1277b4bf] ShiftedArrays v1.0.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[3eaba693] StatsModels v0.6.15
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[f269a46b] TimeZones v1.4.0
[3bb67fe8] TranscodingStreams v0.9.5
[ea10d353] WeakRefStrings v0.6.2
[02c8fc9c] XML2_jll v2.9.10+2
[83775a58] Zlib_jll v1.2.11+16
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Test Summary: | Pass Total
lm | 19 19
Test Summary: | Pass Total
linear model with weights | 11 11
Test Summary: | Pass Total
rankdeficient | 6 6
Test Summary: | Pass Total
Poisson GLM | 8 8
Test Summary: | Pass Total
Binomial with LogitLink | 8 8
Test Summary: | Pass Total
Bernoulli with LogitLink | 8 8
Test Summary: | Pass Total
Bernoulli ProbitLink | 8 8
Test Summary: | Pass Total
Bernoulli CauchitLink | 7 7
Test Summary: | Pass Total
Bernoulli CloglogLink | 8 8
Test Summary: | Pass Total
Offset | 10 10
Test Summary: | Pass Total
Normal LogLink offset | 5 5
Test Summary: | Pass Total
Gamma | 11 11
Test Summary: | Pass Total
InverseGaussian | 11 11
Test Summary: | Pass Total
Gamma LogLink | 10 10
Test Summary: | Pass Total
Gamma IdentityLink | 10 10
Test Summary: | Pass Total
Aggregated Binomial LogitLink | 16 16
Test Summary: | Pass Total
Binomial LogitLink aggregated | 8 8
Test Summary: | Pass Total
Gamma InverseLink Weights | 8 8
Test Summary: | Pass Total
Poisson LogLink Weights | 7 7
Test Summary: | Pass Total
NegativeBinomial LogLink Fixed θ | 8 8
Test Summary: | Pass Total
NegativeBinomial NegativeBinomialLink Fixed θ | 8 8
Test Summary: | Pass Total
NegativeBinomial LogLink, θ to be estimated | 9 9
Test Summary: | Pass Total
NegativeBinomial NegativeBinomialLink, θ to be estimated | 7 7
Test Summary: | Pass Total
Sparse GLM | 3 3
Test Summary: | Pass Total
Predict | 13 13
F test for model comparison: Test Failed at /home/pkgeval/.julia/packages/GLM/lzNU6/test/runtests.jl:528
Expression: sprint(show, ft1a) == "F-test: 2 models fitted on 12 observations\n─────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n─────────────────────────────────────────────────────────────────\n[1] 3 0.1283 0.9603 \n[2] 2 -1 3.2292 3.1008 -0.0000 -0.9603 241.6234 <1e-7\n─────────────────────────────────────────────────────────────────"
Evaluated: "F-test: 2 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 3 0.1283 0.9603 \n[2] 2 -1 3.2292 3.1008 -0.0000 -0.9603 241.6234 <1e-07\n──────────────────────────────────────────────────────────────────" == "F-test: 2 models fitted on 12 observations\n─────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n─────────────────────────────────────────────────────────────────\n[1] 3 0.1283 0.9603 \n[2] 2 -1 3.2292 3.1008 -0.0000 -0.9603 241.6234 <1e-7\n─────────────────────────────────────────────────────────────────"
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:528
[2] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[3] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:508
F test for model comparison: Test Failed at /home/pkgeval/.julia/packages/GLM/lzNU6/test/runtests.jl:540
Expression: sprint(show, ft1b) == "F-test: 2 models fitted on 12 observations\n─────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n─────────────────────────────────────────────────────────────────\n[1] 2 3.2292 -0.0000 \n[2] 3 1 0.1283 -3.1008 0.9603 0.9603 241.6234 <1e-7\n─────────────────────────────────────────────────────────────────"
Evaluated: "F-test: 2 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 2 3.2292 -0.0000 \n[2] 3 1 0.1283 -3.1008 0.9603 0.9603 241.6234 <1e-07\n──────────────────────────────────────────────────────────────────" == "F-test: 2 models fitted on 12 observations\n─────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n─────────────────────────────────────────────────────────────────\n[1] 2 3.2292 -0.0000 \n[2] 3 1 0.1283 -3.1008 0.9603 0.9603 241.6234 <1e-7\n─────────────────────────────────────────────────────────────────"
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:540
[2] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[3] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:508
F test for model comparison: Test Failed at /home/pkgeval/.julia/packages/GLM/lzNU6/test/runtests.jl:554
Expression: sprint(show, ft2a) == "F-test: 3 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 2 3.2292 -0.0000 \n[2] 3 1 0.1283 -3.1008 0.9603 0.9603 241.6234 <1e-7\n[3] 5 2 0.1017 -0.0266 0.9685 0.0082 1.0456 0.3950\n──────────────────────────────────────────────────────────────────"
Evaluated: "F-test: 3 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 2 3.2292 -0.0000 \n[2] 3 1 0.1283 -3.1008 0.9603 0.9603 241.6234 <1e-07\n[3] 5 2 0.1017 -0.0266 0.9685 0.0082 1.0456 0.3950\n──────────────────────────────────────────────────────────────────" == "F-test: 3 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 2 3.2292 -0.0000 \n[2] 3 1 0.1283 -3.1008 0.9603 0.9603 241.6234 <1e-7\n[3] 5 2 0.1017 -0.0266 0.9685 0.0082 1.0456 0.3950\n──────────────────────────────────────────────────────────────────"
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:554
[2] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[3] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:508
F test for model comparison: Test Failed at /home/pkgeval/.julia/packages/GLM/lzNU6/test/runtests.jl:568
Expression: sprint(show, ft2b) == "F-test: 3 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 5 0.1017 0.9685 \n[2] 3 -2 0.1283 0.0266 0.9603 -0.0082 1.0456 0.3950\n[3] 2 -1 3.2292 3.1008 -0.0000 -0.9603 241.6234 <1e-7\n──────────────────────────────────────────────────────────────────"
Evaluated: "F-test: 3 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 5 0.1017 0.9685 \n[2] 3 -2 0.1283 0.0266 0.9603 -0.0082 1.0456 0.3950\n[3] 2 -1 3.2292 3.1008 -0.0000 -0.9603 241.6234 <1e-07\n──────────────────────────────────────────────────────────────────" == "F-test: 3 models fitted on 12 observations\n──────────────────────────────────────────────────────────────────\n DOF ΔDOF SSR ΔSSR R² ΔR² F* p(>F)\n──────────────────────────────────────────────────────────────────\n[1] 5 0.1017 0.9685 \n[2] 3 -2 0.1283 0.0266 0.9603 -0.0082 1.0456 0.3950\n[3] 2 -1 3.2292 3.1008 -0.0000 -0.9603 241.6234 <1e-7\n──────────────────────────────────────────────────────────────────"
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:568
[2] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[3] top-level scope
@ ~/.julia/packages/GLM/lzNU6/test/runtests.jl:508
Test Summary: | Pass Fail Total
F test for model comparison | 20 4 24
ERROR: LoadError: Some tests did not pass: 20 passed, 4 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/GLM/lzNU6/test/runtests.jl:507
ERROR: Package GLM errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19