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1.6.0-DEV-7d3dac44dc.log
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Julia Version 1.6.0-DEV.1148
Commit 7d3dac44dc (2020-10-06 21:26 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Zlib_jll ───────────────────── v1.2.11+16
Installed VersionParsing ─────────────── v1.2.0
Installed DataAPI ────────────────────── v1.3.0
Installed ZipFile ────────────────────── v0.9.2
Installed WoodburyMatrices ───────────── v0.5.2
Installed BinDeps ────────────────────── v1.0.1
Installed DIVAnd ─────────────────────── v2.6.2
Installed Compat ─────────────────────── v3.18.0
Installed MbedTLS ────────────────────── v1.0.2
Installed Ratios ─────────────────────── v0.4.0
Installed Parsers ────────────────────── v1.0.11
Installed JSON ───────────────────────── v0.21.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Tables ─────────────────────── v1.1.0
Installed DataValueInterfaces ────────── v1.0.0
Installed IniFile ────────────────────── v0.5.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed CFTime ─────────────────────── v0.1.0
Installed SpecialFunctions ───────────── v0.10.3
Installed NCDatasets ─────────────────── v0.10.4
Installed Interpolations ─────────────── v0.12.10
Installed CondaBinDeps ───────────────── v0.2.0
Installed Mustache ───────────────────── v1.0.6
Installed Conda ──────────────────────── v1.4.1
Installed DataStructures ─────────────── v0.18.7
Installed Libiconv_jll ───────────────── v1.16.0+6
Installed MbedTLS_jll ────────────────── v2.16.8+0
Installed XML2_jll ───────────────────── v2.9.10+2
Installed TableTraits ────────────────── v1.0.0
Installed URIParser ──────────────────── v0.4.1
Installed HTTP ───────────────────────── v0.8.19
Installed OrderedCollections ─────────── v1.3.1
Installed Missings ───────────────────── v0.4.4
Installed StaticArrays ───────────────── v0.12.4
Installed EzXML ──────────────────────── v1.1.0
Installed AxisAlgorithms ─────────────── v1.0.0
Installed OffsetArrays ───────────────── v1.3.0
Updating `~/.julia/environments/v1.6/Project.toml`
[efc8151c] + DIVAnd v2.6.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v1.0.1
[179af706] + CFTime v0.1.0
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[a9693cdc] + CondaBinDeps v0.2.0
[efc8151c] + DIVAnd v2.6.2
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.18.7
[e2d170a0] + DataValueInterfaces v1.0.0
[8f5d6c58] + EzXML v1.1.0
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[a98d9a8b] + Interpolations v0.12.10
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[94ce4f54] + Libiconv_jll v1.16.0+6
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[e1d29d7a] + Missings v0.4.4
[ffc61752] + Mustache v1.0.6
[85f8d34a] + NCDatasets v0.10.4
[6fe1bfb0] + OffsetArrays v1.3.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[69de0a69] + Parsers v1.0.11
[c84ed2f1] + Ratios v0.4.0
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[30578b45] + URIParser v0.4.1
[81def892] + VersionParsing v1.2.0
[efce3f68] + WoodburyMatrices v0.5.2
[02c8fc9c] + XML2_jll v2.9.10+2
[a5390f91] + ZipFile v0.9.2
[83775a58] + Zlib_jll v1.2.11+16
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building NCDatasets → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/31ce6711bc8fa173d97c59066e78caa2846ed200/build.log`
Testing DIVAnd
Status `/tmp/jl_m3TUXX/Project.toml`
[efc8151c] DIVAnd v2.6.2
[864edb3b] DataStructures v0.18.7
[8f5d6c58] EzXML v1.1.0
[cd3eb016] HTTP v0.8.19
[a98d9a8b] Interpolations v0.12.10
[e1d29d7a] Missings v0.4.4
[ffc61752] Mustache v1.0.6
[85f8d34a] NCDatasets v0.10.4
[276daf66] SpecialFunctions v0.10.3
[860ef19b] StableRNGs v1.0.0
[a5390f91] ZipFile v0.9.2
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[de0858da] Printf
[9a3f8284] Random
[1a1011a3] SharedArrays
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
Status `/tmp/jl_m3TUXX/Manifest.toml`
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v1.0.1
[179af706] CFTime v0.1.0
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[a9693cdc] CondaBinDeps v0.2.0
[efc8151c] DIVAnd v2.6.2
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.18.7
[e2d170a0] DataValueInterfaces v1.0.0
[8f5d6c58] EzXML v1.1.0
[cd3eb016] HTTP v0.8.19
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.10
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[94ce4f54] Libiconv_jll v1.16.0+6
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[e1d29d7a] Missings v0.4.4
[ffc61752] Mustache v1.0.6
[85f8d34a] NCDatasets v0.10.4
[6fe1bfb0] OffsetArrays v1.3.0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.1
[69de0a69] Parsers v1.0.11
[c84ed2f1] Ratios v0.4.0
[276daf66] SpecialFunctions v0.10.3
[860ef19b] StableRNGs v1.0.0
[90137ffa] StaticArrays v0.12.4
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[30578b45] URIParser v0.4.1
[81def892] VersionParsing v1.2.0
[efce3f68] WoodburyMatrices v0.5.2
[02c8fc9c] XML2_jll v2.9.10+2
[a5390f91] ZipFile v0.9.2
[83775a58] Zlib_jll v1.2.11+16
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
0.000052 seconds (27 allocations: 1008 bytes)
0.000004 seconds (1 allocation: 96 bytes)
0.962384 seconds (1.13 M allocations: 60.952 MiB, 2.73% gc time, 99.97% compilation time)
fi[12, 12, 3] = -0.47026334552803173
fi2[12, 12, 3] = -0.47026334552803284
fi[12, 12, 3] = -0.4706929401971311
fi2[12, 12, 3] = -0.4706929401971307
[ Info: number of windows: 1
[ Info: number of windows: 1
[ Info: download observations /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Provencal/WOD-Salinity.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_average_background_profile.jl:25
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_average_background_profile.jl:25
[ Info: Time step 1 / 4
[ Info: Time step 2 / 4
[ Info: Time step 3 / 4
[ Info: Time step 4 / 4
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_domain.jl:16
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_domain.jl:16
[ Info: Reading data from file /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../data/time_series_small.txt
[ Info: No. of profiles in the file: 2
[ Info: Working on variable Water body dissolved oxygen concentration
[ Info: Starting loop on the 2 profiles
[ Info: Done reading the profiles
[ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_load_mask.jl:26
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_load_mask.jl:26
[ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_8.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_load_mask.jl:31
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_load_mask.jl:31
[ Info: Computing weights using 2 CPU thread(s)
[ Info: download currents /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Adriatic/all-monthly-currents-2018.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_average_file.jl:15
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_average_file.jl:15
[ Info: average vozocrtx
[ Info: time instance 1 of 4
[ Info: time instance 2 of 4
[ Info: time instance 3 of 4
[ Info: time instance 4 of 4
[ Info: average vomecrty
[ Info: time instance 1 of 4
[ Info: time instance 2 of 4
[ Info: time instance 3 of 4
[ Info: time instance 4 of 4
[ Info: analysis uses the velocity time index 1
[ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_product.jl:39
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_product.jl:39
[ Info: download observations /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Provencal/WOD-Salinity.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_product.jl:45
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_product.jl:45
[ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/3zIKI/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = top-level scope at test_product_2d.jl:29
└ @ Core ~/.julia/packages/DIVAnd/3zIKI/test/test_product_2d.jl:29
┌ Warning: Unoptimized versions do not allow for cross validation
└ @ DIVAnd ~/.julia/packages/DIVAnd/3zIKI/src/DIVAnd_heatmap.jl:100
┌ Warning: Method GridKernel does not allow for cross validation. If you need the latter, force myheatmapmethod to DataKernel
└ @ DIVAnd ~/.julia/packages/DIVAnd/3zIKI/src/DIVAnd_heatmap.jl:95
┌ Warning: Method GridKernel does not allow for cross validation. If you need the latter, force myheatmapmethod to DataKernel
└ @ DIVAnd ~/.julia/packages/DIVAnd/3zIKI/src/DIVAnd_heatmap.jl:95
┌ Warning: Data array size (150,) is larger then maximum 100. Superobservations will be created. To avoid, increase nmax to the desired number of superobs
└ @ DIVAnd ~/.julia/packages/DIVAnd/3zIKI/src/DIVAnd_heatmap.jl:48
Test Summary: | Pass Total
DIVAnd | 440 440
┌ Warning: Assignment to `x` in soft scope is ambiguous because a global variable by the same name exists: `x` will be treated as a new local. Disambiguate by using `local x` to suppress this warning or `global x` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_laplacian.jl:37
┌ Warning: Assignment to `mask` in soft scope is ambiguous because a global variable by the same name exists: `mask` will be treated as a new local. Disambiguate by using `local mask` to suppress this warning or `global mask` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_laplacian.jl:38
┌ Warning: Assignment to `pmn` in soft scope is ambiguous because a global variable by the same name exists: `pmn` will be treated as a new local. Disambiguate by using `local pmn` to suppress this warning or `global pmn` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_laplacian.jl:44
┌ Warning: Assignment to `D2` in soft scope is ambiguous because a global variable by the same name exists: `D2` will be treated as a new local. Disambiguate by using `local D2` to suppress this warning or `global D2` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_laplacian.jl:68
Test Summary: | Pass Total
DIVAnd-laplacian | 9 9
Test Summary: | Pass Total
DIVAnd-jog | 10 10
┌ Warning: Assignment to `mask` in soft scope is ambiguous because a global variable by the same name exists: `mask` will be treated as a new local. Disambiguate by using `local mask` to suppress this warning or `global mask` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_kernel.jl:18
┌ Warning: Assignment to `pmn` in soft scope is ambiguous because a global variable by the same name exists: `pmn` will be treated as a new local. Disambiguate by using `local pmn` to suppress this warning or `global pmn` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_kernel.jl:18
┌ Warning: Assignment to `xyi` in soft scope is ambiguous because a global variable by the same name exists: `xyi` will be treated as a new local. Disambiguate by using `local xyi` to suppress this warning or `global xyi` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_kernel.jl:18
┌ Warning: Assignment to `xy` in soft scope is ambiguous because a global variable by the same name exists: `xy` will be treated as a new local. Disambiguate by using `local xy` to suppress this warning or `global xy` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_kernel.jl:21
┌ Warning: Assignment to `fi` in soft scope is ambiguous because a global variable by the same name exists: `fi` will be treated as a new local. Disambiguate by using `local fi` to suppress this warning or `global fi` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_kernel.jl:24
┌ Warning: Assignment to `s` in soft scope is ambiguous because a global variable by the same name exists: `s` will be treated as a new local. Disambiguate by using `local s` to suppress this warning or `global s` to assign to the existing global variable.
└ @ ~/.julia/packages/DIVAnd/3zIKI/test/test_kernel.jl:24
maximum(fi) = 0.5738757056115911
maximum(fi) = 0.49258708324498063
maximum(fi) = 0.8548285715910556
maximum(fi) = 0.6306788680391434
maximum(fi) = 0.5010709005648954
Test Summary: | Pass Total
DIVAnd-kernel | 5 5
Testing DIVAnd tests passed