-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-0669b64613.log
199 lines (197 loc) · 7.42 KB
/
1.6.0-DEV-0669b64613.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
Julia Version 1.6.0-DEV.1153
Commit 0669b64613 (2020-10-07 09:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Zlib_jll ──────────── v1.2.11+16
Installed FixedPointNumbers ─── v0.7.1
Installed Compat ────────────── v3.18.0
Installed Combinatorics ─────── v0.7.0
Installed BioTools ──────────── v1.0.0
Installed BioSymbols ────────── v3.1.0
Installed IntervalTrees ─────── v1.0.0
Installed BioSequences ──────── v1.1.0
Installed URIParser ─────────── v0.4.1
Installed RecipesBase ───────── v0.8.0
Installed Automa ────────────── v0.7.0
Installed TranscodingStreams ── v0.9.5
Installed OrderedCollections ── v1.3.1
Installed ColorTypes ────────── v0.9.1
Installed Polynomials ───────── v0.6.1
Installed CodecZlib ─────────── v0.7.0
Installed DataStructures ────── v0.17.20
Installed BGZFStreams ───────── v0.3.0
Installed BinaryProvider ────── v0.5.10
Installed GenomicFeatures ───── v1.0.4
Installed IndexableBitVectors ─ v1.0.0
Installed BufferedStreams ───── v1.0.0
Installed Twiddle ───────────── v1.1.2
Installed EzXML ─────────────── v0.9.5
Installed BioCore ───────────── v2.0.5
Installed BioAlignments ─────── v1.0.1
Installed Libz ──────────────── v1.0.1
Installed YAML ──────────────── v0.4.2
Updating `~/.julia/environments/v1.6/Project.toml`
[fa51a905] + BioTools v1.0.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[67c07d97] + Automa v0.7.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.10
[00701ae9] + BioAlignments v1.0.1
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.7.0
[3da002f7] + ColorTypes v0.9.1
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v3.18.0
[864edb3b] + DataStructures v0.17.20
[8f5d6c58] + EzXML v0.9.5
[53c48c17] + FixedPointNumbers v0.7.1
[899a7d2d] + GenomicFeatures v1.0.4
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[2ec943e9] + Libz v1.0.1
[bac558e1] + OrderedCollections v1.3.1
[f27b6e38] + Polynomials v0.6.1
[3cdcf5f2] + RecipesBase v0.8.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.2
[30578b45] + URIParser v0.4.1
[ddb6d928] + YAML v0.4.2
[83775a58] + Zlib_jll v1.2.11+16
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building EzXML → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/469de9cb996a9c03f31905619ff3c33e905711f3/build.log`
Testing BioTools
Status `/tmp/jl_lA5DbX/Project.toml`
[00701ae9] BioAlignments v1.0.1
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[fa51a905] BioTools v1.0.0
[8f5d6c58] EzXML v0.9.5
Status `/tmp/jl_lA5DbX/Manifest.toml`
[67c07d97] Automa v0.7.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.10
[00701ae9] BioAlignments v1.0.1
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.7.0
[3da002f7] ColorTypes v0.9.1
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v3.18.0
[864edb3b] DataStructures v0.17.20
[8f5d6c58] EzXML v0.9.5
[53c48c17] FixedPointNumbers v0.7.1
[899a7d2d] GenomicFeatures v1.0.4
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[2ec943e9] Libz v1.0.1
[bac558e1] OrderedCollections v1.3.1
[f27b6e38] Polynomials v0.6.1
[3cdcf5f2] RecipesBase v0.8.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.2
[30578b45] URIParser v0.4.1
[ddb6d928] YAML v0.4.2
[83775a58] Zlib_jll v1.2.11+16
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
ERROR: LoadError: ArgumentError: Package Test not found in current path:
- Run `import Pkg; Pkg.add("Test")` to install the Test package.
Stacktrace:
[1] require(into::Module, mod::Symbol)
@ Base ./loading.jl:828
[2] include(fname::String)
@ Base.MainInclude ./client.jl:444
[3] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/BioTools/wXGId/test/runtests.jl:1
ERROR: Package BioTools errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19