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1.6.0-DEV-0669b64613.log
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Julia Version 1.6.0-DEV.1153
Commit 0669b64613 (2020-10-07 09:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed ConstructionBase ───────────── v1.0.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed MetadataArrays ─────────────── v0.1.0
Installed OceanGrids ─────────────────── v0.3.0
Installed AIBECS ─────────────────────── v0.7.9
Installed IterativeSolvers ───────────── v0.8.4
Installed DataFrames ─────────────────── v0.21.7
Installed Distributions ──────────────── v0.23.12
Installed IniFile ────────────────────── v0.5.0
Installed NaNMath ────────────────────── v0.3.4
Installed PDMats ─────────────────────── v0.10.1
Installed Compat ─────────────────────── v3.18.0
Installed Tables ─────────────────────── v1.1.0
Installed DataAPI ────────────────────── v1.3.0
Installed Parameters ─────────────────── v0.12.1
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed DBFTables ──────────────────── v0.2.2
Installed SIMDPirates ────────────────── v0.8.25
Installed FunctionWrappers ───────────── v1.1.1
Installed NearestNeighbors ───────────── v0.4.6
Installed RecipesBase ────────────────── v1.1.0
Installed StatsBase ──────────────────── v0.33.1
Installed IteratorInterfaceExtensions ── v1.0.0
Installed WeakRefStrings ─────────────── v0.6.2
Installed DiffRules ──────────────────── v1.0.1
Installed MbedTLS ────────────────────── v1.0.2
Installed MacroTools ─────────────────── v0.5.5
Installed Reexport ───────────────────── v0.2.0
Installed BSON ───────────────────────── v0.2.6
Installed MuladdMacro ────────────────── v0.2.2
Installed CommonSubexpressions ───────── v0.3.0
Installed CategoricalArrays ──────────── v0.8.3
Installed UnitfulRecipes ─────────────── v0.2.4
Installed DataStructures ─────────────── v0.18.7
Installed Interpolations ─────────────── v0.12.10
Installed URIParser ──────────────────── v0.4.1
Installed PooledArrays ───────────────── v0.5.3
Installed LabelledArrays ─────────────── v1.3.0
Installed FillArrays ─────────────────── v0.9.6
Installed ArrayInterface ─────────────── v2.13.3
Installed TreeViews ──────────────────── v0.3.0
Installed ForwardDiff ────────────────── v0.10.12
Installed ChainRulesCore ─────────────── v0.9.13
Installed RecursiveFactorization ─────── v0.1.4
Installed CondaBinDeps ───────────────── v0.2.0
Installed GeoInterface ───────────────── v0.5.4
Installed Missings ───────────────────── v0.4.4
Installed Conda ──────────────────────── v1.4.1
Installed Roots ──────────────────────── v1.0.5
Installed Unitful ────────────────────── v1.4.1
Installed OrderedCollections ─────────── v1.3.1
Installed CFTime ─────────────────────── v0.1.0
Installed WoodburyMatrices ───────────── v0.5.2
Installed DataDeps ───────────────────── v0.7.2
Installed Rmath ──────────────────────── v0.6.1
Installed MbedTLS_jll ────────────────── v2.16.8+0
Installed FieldMetadata ──────────────── v0.3.0
Installed NCDatasets ─────────────────── v0.10.4
Installed QuadGK ─────────────────────── v2.4.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed BinDeps ────────────────────── v1.0.1
Installed SpecialFunctions ───────────── v0.10.3
Installed Parsers ────────────────────── v1.0.11
Installed StaticArrays ───────────────── v0.12.4
Installed HTTP ───────────────────────── v0.8.19
Installed AxisAlgorithms ─────────────── v1.0.0
Installed InvertedIndices ────────────── v1.0.0
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed VersionParsing ─────────────── v1.2.0
Installed RecursiveArrayTools ────────── v2.7.1
Installed OffsetArrays ───────────────── v1.3.0
Installed JSON ───────────────────────── v0.21.1
Installed DataValueInterfaces ────────── v1.0.0
Installed Shapefile ──────────────────── v0.6.2
Installed TableTraits ────────────────── v1.0.0
Installed StatsFuns ──────────────────── v0.9.5
Installed Distances ──────────────────── v0.9.2
Installed StructTypes ────────────────── v1.1.0
Installed Requires ───────────────────── v1.1.0
Installed LoopVectorization ──────────── v0.8.26
Installed DocStringExtensions ────────── v0.8.3
Installed ZygoteRules ────────────────── v0.2.0
Installed DiffResults ────────────────── v1.0.2
Installed UnPack ─────────────────────── v1.0.2
Installed Flatten ────────────────────── v0.3.5
Installed CpuId ──────────────────────── v0.2.2
Installed VectorizationBase ──────────── v0.12.33
Installed Ratios ─────────────────────── v0.4.0
Installed SLEEFPirates ───────────────── v0.5.5
Installed DiffEqBase ─────────────────── v6.48.0
Updating `~/.julia/environments/v1.6/Project.toml`
[ace601d6] + AIBECS v0.7.9
Updating `~/.julia/environments/v1.6/Manifest.toml`
[ace601d6] + AIBECS v0.7.9
[4fba245c] + ArrayInterface v2.13.3
[13072b0f] + AxisAlgorithms v1.0.0
[fbb218c0] + BSON v0.2.6
[9e28174c] + BinDeps v1.0.1
[179af706] + CFTime v0.1.0
[324d7699] + CategoricalArrays v0.8.3
[d360d2e6] + ChainRulesCore v0.9.13
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[a9693cdc] + CondaBinDeps v0.2.0
[187b0558] + ConstructionBase v1.0.0
[adafc99b] + CpuId v0.2.2
[75c7ada1] + DBFTables v0.2.2
[9a962f9c] + DataAPI v1.3.0
[124859b0] + DataDeps v0.7.2
[a93c6f00] + DataFrames v0.21.7
[864edb3b] + DataStructures v0.18.7
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.48.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.9.2
[31c24e10] + Distributions v0.23.12
[ffbed154] + DocStringExtensions v0.8.3
[bf96fef3] + FieldMetadata v0.3.0
[1a297f60] + FillArrays v0.9.6
[4c728ea3] + Flatten v0.3.5
[f6369f11] + ForwardDiff v0.10.12
[069b7b12] + FunctionWrappers v1.1.1
[cf35fbd7] + GeoInterface v0.5.4
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[a98d9a8b] + Interpolations v0.12.10
[41ab1584] + InvertedIndices v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.4
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[2ee39098] + LabelledArrays v1.3.0
[bdcacae8] + LoopVectorization v0.8.26
[1914dd2f] + MacroTools v0.5.5
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[49441bc9] + MetadataArrays v0.1.0
[e1d29d7a] + Missings v0.4.4
[46d2c3a1] + MuladdMacro v0.2.2
[85f8d34a] + NCDatasets v0.10.4
[77ba4419] + NaNMath v0.3.4
[b8a86587] + NearestNeighbors v0.4.6
[cfe838f4] + OceanGrids v0.3.0
[6fe1bfb0] + OffsetArrays v1.3.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.11
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.4.1
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v1.1.0
[731186ca] + RecursiveArrayTools v2.7.1
[f2c3362d] + RecursiveFactorization v0.1.4
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.1.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[f2b01f46] + Roots v1.0.5
[21efa798] + SIMDPirates v0.8.25
[476501e8] + SLEEFPirates v0.5.5
[8e980c4a] + Shapefile v0.6.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.1
[3a884ed6] + UnPack v1.0.2
[1986cc42] + Unitful v1.4.1
[42071c24] + UnitfulRecipes v0.2.4
[3d5dd08c] + VectorizationBase v0.12.33
[81def892] + VersionParsing v1.2.0
[ea10d353] + WeakRefStrings v0.6.2
[efce3f68] + WoodburyMatrices v0.5.2
[700de1a5] + ZygoteRules v0.2.0
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building NCDatasets ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/31ce6711bc8fa173d97c59066e78caa2846ed200/build.log`
Building SLEEFPirates → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/67ae90a18aa8c22bf159318300e765fbd89ddf6e/build.log`
Testing AIBECS
Status `/tmp/jl_oMWsxX/Project.toml`
[ace601d6] AIBECS v0.7.9
[fbb218c0] BSON v0.2.6
[124859b0] DataDeps v0.7.2
[a93c6f00] DataFrames v0.21.7
[2b5f629d] DiffEqBase v6.48.0
[b4f34e82] Distances v0.9.2
[31c24e10] Distributions v0.23.12
[fa6b7ba4] DualNumbers v0.6.2
[bf96fef3] FieldMetadata v0.3.0
[4c728ea3] Flatten v0.3.5
[f6369f11] ForwardDiff v0.10.12
[a98d9a8b] Interpolations v0.12.10
[49441bc9] MetadataArrays v0.1.0
[85f8d34a] NCDatasets v0.10.4
[b8a86587] NearestNeighbors v0.4.6
[cfe838f4] OceanGrids v0.3.0
[91a5bcdd] Plots v1.6.9
[3cdcf5f2] RecipesBase v1.1.0
[189a3867] Reexport v0.2.0
[8e980c4a] Shapefile v0.6.2
[3a884ed6] UnPack v1.0.2
[1986cc42] Unitful v1.4.1
[42071c24] UnitfulRecipes v0.2.4
[04f20302] WorldOceanAtlasTools v0.4.3
[ade2ca70] Dates
[37e2e46d] LinearAlgebra
[de0858da] Printf
[2f01184e] SparseArrays
[4607b0f0] SuiteSparse
[8dfed614] Test
Status `/tmp/jl_oMWsxX/Manifest.toml`
[ace601d6] AIBECS v0.7.9
[79e6a3ab] Adapt v2.3.0
[4fba245c] ArrayInterface v2.13.3
[13072b0f] AxisAlgorithms v1.0.0
[fbb218c0] BSON v0.2.6
[9e28174c] BinDeps v1.0.1
[6e34b625] Bzip2_jll v1.0.6+4
[179af706] CFTime v0.1.0
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.8.3
[d360d2e6] ChainRulesCore v0.9.13
[35d6a980] ColorSchemes v3.10.1
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[a9693cdc] CondaBinDeps v0.2.0
[187b0558] ConstructionBase v1.0.0
[d38c429a] Contour v0.5.5
[adafc99b] CpuId v0.2.2
[75c7ada1] DBFTables v0.2.2
[9a962f9c] DataAPI v1.3.0
[124859b0] DataDeps v0.7.2
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.18.7
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.48.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.2
[31c24e10] Distributions v0.23.12
[ffbed154] DocStringExtensions v0.8.3
[fa6b7ba4] DualNumbers v0.6.2
[5ae413db] EarCut_jll v2.1.5+0
[c87230d0] FFMPEG v0.4.0
[b22a6f82] FFMPEG_jll v4.3.1+2
[bf96fef3] FieldMetadata v0.3.0
[1a297f60] FillArrays v0.9.6
[53c48c17] FixedPointNumbers v0.8.4
[4c728ea3] Flatten v0.3.5
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.12
[d7e528f0] FreeType2_jll v2.10.1+4
[559328eb] FriBidi_jll v1.0.5+5
[069b7b12] FunctionWrappers v1.1.1
[28b8d3ca] GR v0.52.0
[cf35fbd7] GeoInterface v0.5.4
[5c1252a2] GeometryBasics v0.3.3
[4d00f742] GeometryTypes v0.8.3
[42e2da0e] Grisu v1.0.0
[cd3eb016] HTTP v0.8.19
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.10
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[c1c5ebd0] LAME_jll v3.100.0+2
[b964fa9f] LaTeXStrings v1.2.0
[2ee39098] LabelledArrays v1.3.0
[23fbe1c1] Latexify v0.14.0
[dd192d2f] LibVPX_jll v1.9.0+0
[bdcacae8] LoopVectorization v0.8.26
[1914dd2f] MacroTools v0.5.5
[7eb4fadd] Match v1.1.0
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[442fdcdd] Measures v0.3.1
[49441bc9] MetadataArrays v0.1.0
[e1d29d7a] Missings v0.4.4
[46d2c3a1] MuladdMacro v0.2.2
[85f8d34a] NCDatasets v0.10.4
[77ba4419] NaNMath v0.3.4
[b8a86587] NearestNeighbors v0.4.6
[cfe838f4] OceanGrids v0.3.0
[6fe1bfb0] OffsetArrays v1.3.0
[e7412a2a] Ogg_jll v1.3.4+1
[458c3c95] OpenSSL_jll v1.1.1+5
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[69de0a69] Parsers v1.0.11
[ccf2f8ad] PlotThemes v2.0.0
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[91a5bcdd] Plots v1.6.9
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Testing Running tests...
Creating 2-box model ✔
┌ Info: You are about to use the 2-box model of Sarmiento and Gruber [2006].
│ If you use it for research, please cite:
│
│ - Sarmiento, Jorge L., and Nicolas Gruber. Ocean biogeochemical dynamics. Princeton University Press, 2006.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Sarmiento_Gruber_2006" key.)
Divergence timescale: Inf Myr
Mass conservation timescale: Inf Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
Creating 6-box model ✔
┌ Info: You are about to use the 3-box model of Archer et al. [2000].
│ If you use it for research, please cite:
│
│ - Archer, D. E., Eshel, G., Winguth, A., Broecker, W., Pierrehumbert, R., Tobis, M., and Jacob, R. (2000), Atmospheric pCO2 sensitivity to the biological pump in the ocean, Global Biogeochem. Cycles, 14 (4), 1219–1230, doi:10.1029/1999GB001216.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
│ (Look for the "Archer_etal_2000" key.)
│
│ Note that although this model represents the 3-box model of Archer et al. [2000],
│ it effectively requires 6 boxes to represent in the AIBECS,
│ so that particulate sinking flux divergence operators can be built.
└ (See the comments at the start of the Archer_etal_2000.jl file for details.)
Divergence timescale: 2.618654665745728e9 Myr
Mass conservation timescale: 1.1325608935745733e10 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at OCIM1.jl:20
└ @ AIBECS.OCIM1 ~/.julia/packages/AIBECS/YzUHF/src/OCIM1.jl:20
┌ Info: You are about to use the OCIM1_CTL model.
│ If you use it for research, please cite:
│
│ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.)
Divergence timescale: 56.88633505066291 Myr
Mass conservation timescale: 1.5924997910682485e7 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at OCIM0.jl:20
└ @ AIBECS.OCIM0 ~/.julia/packages/AIBECS/YzUHF/src/OCIM0.jl:20
┌ Info: You are about to use the OCIM0.1 model.
│ If you use it for research, please cite:
│
│ - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.)
Divergence timescale: 4918.412202633426 Myr
Mass conservation timescale: 1.1589255527365623e9 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at OCCA.jl:28
└ @ AIBECS.OCCA ~/.julia/packages/AIBECS/YzUHF/src/OCCA.jl:28
┌ Info: You are about to use the OCCA model.
│ If you use it for research, please cite:
│
│ - Forget, G., 2010: Mapping Ocean Observations in a Dynamical Framework: A 2004–06 Ocean Atlas. J. Phys. Oceanogr., 40, 1201–1221, https://doi.org/10.1175/2009JPO4043.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Forget_2010" key.)
Divergence timescale: 1.7451675993471023e7 Myr
Mass conservation timescale: 0.07893326563268274 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at OCIM2.jl:33
└ @ AIBECS.OCIM2 ~/.julia/packages/AIBECS/YzUHF/src/OCIM2.jl:33
┌ Info: You are about to use the OCIM2_CTL_He model.
│ If you use it for research, please cite:
│
│ - DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle‐³He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Holzer_2019" key.)
Divergence timescale: 56.82128130650262 Myr
Mass conservation timescale: 1.6438802905113876e7 Myr
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at aeolian_sources.jl:18
└ @ AIBECS.AeolianSources ~/.julia/packages/AIBECS/YzUHF/src/aeolian_sources.jl:18
┌ Info: You are about to use the Chien et al. (2016) data for aeolian deposition.
│ If you use it for research, please cite:
│
│ - Chien, C.-T., K. R. M. Mackey, S. Dutkiewicz, N. M. Mahowald, J. M. Prospero, and A. Paytan (2016), Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados, Global Biogeochem. Cycles, 30, doi:10.1002/2015GB005334.
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Chien_etal_2016" key.)
┌ Info: You are about to use the Dai and Trenberth river discharge dataset.
│ If you use it for research, please cite:
│
│ - For the dataset itself: Dai, A. 2017. Dai and Trenberth Global River Flow and Continental Discharge Dataset. Research Data Archive at the National Center for Atmospheric Research, Computational and Information Systems Laboratory. https://doi.org/10.5065/D6V69H1T.
│ - For the formal publication that describe the dataset: Dai, A., and K. E. Trenberth, 2002: Estimates of freshwater discharge from continents: Latitudinal and seasonal variations. J. Hydrometeorol., 3, 660–687.
│ - For descriptions of updates to the dataset:
│ - Dai, A., T. Qian, K. E. Trenberth, and J. D Milliman, 2009: Changes in continental freshwater discharge from 1948-2004. J. Climate, 22, 2773–2791.
│ - Dai, A., 2016: Historical and future changes in streamflow and continental runoff: A review, in Terrestrial Water Cycle and Climate Change: Natural and Human-Induced Impacts, Geophysical Monograph 221. Ed. Qiuhong Tang and Taikan Oki, AGU, John Wiley & Sons, 17–37 (DOI: 10.1002/9781118971772).
│
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Dai_2017", "Dai_Trenberth_2002", "Dai_etal_2009", and "Dai_2016" keys.)
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at GroundWaters.jl:21
└ @ AIBECS.GroundWaters ~/.julia/packages/AIBECS/YzUHF/src/GroundWaters.jl:21
Archive: /home/pkgeval/.julia/datadeps/groundwater_discharge/41467_2020_15064_MOESM8_ESM.zip
creating: /home/pkgeval/.julia/datadeps/groundwater_discharge/Supplementary_data_3/
inflating: /home/pkgeval/.julia/datadeps/groundwater_discharge/Supplementary_data_3/coastal_gw_discharge.prj
inflating: /home/pkgeval/.julia/datadeps/groundwater_discharge/Supplementary_data_3/coastal_gw_discharge.dbf
inflating: /home/pkgeval/.julia/datadeps/groundwater_discharge/Supplementary_data_3/legend_for_supplementary_data_3.txt
inflating: /home/pkgeval/.julia/datadeps/groundwater_discharge/Supplementary_data_3/coastal_gw_discharge.shp
inflating: /home/pkgeval/.julia/datadeps/groundwater_discharge/Supplementary_data_3/coastal_gw_discharge.shx
┌ Info: You are about to use the groundwater discharge data set.
│ If you use it for research, please cite:
│
│ - Luijendijk, E., Gleeson, T. & Moosdorf, N. Fresh groundwater discharge insignificant for the world’s oceans but important for coastal ecosystems. Nat Commun 11, 1260 (2020). doi:10.1038/s41467-020-15064-8
│ - Luijendijk, Elco; Gleeson, Tom; Moosdorf, Nils (2019): Geospatial data and model results for a global model study of coastal groundwater discharge. PANGAEA, doi:10.1594/PANGAEA.907641
│
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Luijendijk_etal_2019" and "Luijendijk_etal_2020" keys.)
Test Summary: | Pass Total
Test setup, plots, and sources | 73 73
Creating François Primeau's 2x2x2 model ✔
Divergence timescale: 2.2842804373910645e11 Myr
Mass conservation timescale: 1.2598347527548342e12 Myr
TestParameters{Float64}
│ Row │ Symbol │ Value │ Initial value │ Unit │ Prior │ Description │ Optimizable │
│ │ Symbol │ Float64 │ Float64 │ FreeUnit… │ Distribution… │ String │ Bool │
├─────┼────────┼──────────┼───────────────┼───────────┼──────────────────────────────────┼─────────────────────────────────────────────┼─────────────┤
│ 1 │ xgeo │ 2.17 │ 2.17 │ mmol m^-3 │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Geological mean P concentration │ 1 │
│ 2 │ τgeo │ 1.0 │ 1.0 │ Myr │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Geological restoring timescale │ 0 │
│ 3 │ k │ 10.0 │ 10.0 │ μmol m^-3 │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Half-saturation constant (Michaelis-Menten) │ 1 │
│ 4 │ z₀ │ 80.0 │ 80.0 │ m │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Depth of the euphotic layer base │ 0 │
│ 5 │ w₀ │ 1.0 │ 1.0 │ m d^-1 │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Sinking velocity at surface │ 1 │
│ 6 │ w′ │ 0.22 │ 0.22 │ d^-1 │ Normal{Float64}(μ=0.0, σ=1.0) │ Vertical gradient of sinking velocity │ 1 │
│ 7 │ τDOP │ 0.25 │ 0.25 │ yr │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Remineralization timescale (DOP to DIP) │ 1 │
│ 8 │ τPOP │ 5.25 │ 5.25 │ d │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Dissolution timescale (POP to DOP) │ 1 │
│ 9 │ σ │ 0.333333 │ 0.333333 │ │ Uniform{Float64}(a=0.0, b=1.0) │ Fraction of quick local uptake recycling │ 1 │
│ 10 │ τDIP │ 30.0 │ 30.0 │ d │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Uptake maximum timescale (DIP to POP) │ 1 │
TestParameters{Dual128}
│ Row │ Symbol │ Value │ Initial value │ Unit │ Prior │ Description │ Optimizable │
│ │ Symbol │ Dual128 │ Float64 │ FreeUnit… │ Distribution… │ String │ Bool │
├─────┼────────┼──────────────────┼───────────────┼───────────┼──────────────────────────────────┼─────────────────────────────────────────────┼─────────────┤
│ 1 │ xgeo │ 2.17+1000.0ɛ │ 2.17 │ mmol m^-3 │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Geological mean P concentration │ 1 │
│ 2 │ τgeo │ 1.0+0.0ɛ │ 1.0 │ Myr │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Geological restoring timescale │ 0 │
│ 3 │ k │ 10.0+1.0e6ɛ │ 10.0 │ μmol m^-3 │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Half-saturation constant (Michaelis-Menten) │ 1 │
│ 4 │ z₀ │ 80.0+0.0ɛ │ 80.0 │ m │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Depth of the euphotic layer base │ 0 │
│ 5 │ w₀ │ 1.0+86400.0ɛ │ 1.0 │ m d^-1 │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Sinking velocity at surface │ 1 │
│ 6 │ w′ │ 0.22+86400.0ɛ │ 0.22 │ d^-1 │ Normal{Float64}(μ=0.0, σ=1.0) │ Vertical gradient of sinking velocity │ 1 │
│ 7 │ τDOP │ 0.25+3.16881e-8ɛ │ 0.25 │ yr │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Remineralization timescale (DOP to DIP) │ 1 │
│ 8 │ τPOP │ 5.25+1.15741e-5ɛ │ 5.25 │ d │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Dissolution timescale (POP to DOP) │ 1 │
│ 9 │ σ │ 0.333333+1.0ɛ │ 0.333333 │ │ Uniform{Float64}(a=0.0, b=1.0) │ Fraction of quick local uptake recycling │ 1 │
│ 10 │ τDIP │ 30.0+1.15741e-5ɛ │ 30.0 │ d │ LogNormal{Float64}(μ=0.0, σ=1.0) │ Uptake maximum timescale (DIP to POP) │ 1 │
\begin{tabular}{r|ccccccc}
& Symbol & Value & Initial value & Unit & Prior & Description & Optimizable\\
\hline
& Symbol & Float64 & Float64 & FreeUni… & Distrib… & String & Bool\\
\hline
1 & xgeo & 2.17 & 2.17 & mmol m\^-3 & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Geological mean P concentration & 1 \\
2 & τgeo & 1.0 & 1.0 & Myr & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Geological restoring timescale & 0 \\
3 & k & 10.0 & 10.0 & μmol m\^-3 & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Half-saturation constant (Michaelis-Menten) & 1 \\
4 & z₀ & 80.0 & 80.0 & m & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Depth of the euphotic layer base & 0 \\
5 & w₀ & 1.0 & 1.0 & m d\^-1 & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Sinking velocity at surface & 1 \\
6 & w′ & 0.22 & 0.22 & d\^-1 & Normal\{Float64\}(μ=0.0, σ=1.0) & Vertical gradient of sinking velocity & 1 \\
7 & τDOP & 0.25 & 0.25 & yr & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Remineralization timescale (DOP to DIP) & 1 \\
8 & τPOP & 5.25 & 5.25 & d & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Dissolution timescale (POP to DOP) & 1 \\
9 & σ & 0.333333 & 0.333333 & & Uniform\{Float64\}(a=0.0, b=1.0) & Fraction of quick local uptake recycling & 1 \\
10 & τDIP & 30.0 & 30.0 & d & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Uptake maximum timescale (DIP to POP) & 1 \\
\end{tabular}
14
Registering World Ocean Atlas data with DataDeps
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/UDkcE/src/functions.jl:227
┌ Warning: Base.download is deprecated; use Downloads.download instead
│ caller = fallback_download(remotepath::String, localdir::String) at names.jl:10
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/UDkcE/src/names.jl:10
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "53a32321db4115a939f50c8d767f0df4e7263117e4afc8fd98ca861f67223eec"
└ @ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/verification.jl:44
Reading NetCDF file
Rearranging data
Filtering data
Averaging data over each grid box
Setting μ = 0 and σ² = ∞ where no obs
Setting a realistic minimum for σ²
Test Summary: | Pass Total
test everything | 98 98
Testing AIBECS tests passed