-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-7d3dac44dc.log
383 lines (382 loc) · 17.8 KB
/
1.6.0-DEV-7d3dac44dc.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
Julia Version 1.6.0-DEV.1148
Commit 7d3dac44dc (2020-10-06 21:26 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed PDMats ─────────────────────── v0.10.1
Installed LaTeXStrings ───────────────── v1.2.0
Installed CommonSubexpressions ───────── v0.3.0
Installed Contour ────────────────────── v0.5.5
Installed CategoricalArrays ──────────── v0.8.3
Installed DataFrames ─────────────────── v0.21.7
Installed ArrayInterface ─────────────── v2.13.3
Installed Media ──────────────────────── v0.5.0
Installed Measures ───────────────────── v0.3.1
Installed DataAPI ────────────────────── v1.3.0
Installed VersionParsing ─────────────── v1.2.0
Installed Showoff ────────────────────── v0.3.2
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed Hexagons ───────────────────── v0.2.0
Installed WoodburyMatrices ───────────── v0.5.2
Installed Rmath ──────────────────────── v0.6.1
Installed Calculus ───────────────────── v0.5.1
Installed BinDeps ────────────────────── v1.0.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed KernelDensity ──────────────── v0.5.1
Installed FFTW ───────────────────────── v1.2.4
Installed ColorTypes ─────────────────── v0.10.9
Installed DiffResults ────────────────── v1.0.2
Installed Grisu ──────────────────────── v1.0.0
Installed DataValueInterfaces ────────── v1.0.0
Installed Compat ─────────────────────── v3.18.0
Installed Tables ─────────────────────── v1.1.0
Installed DiffRules ──────────────────── v1.0.1
Installed Parsers ────────────────────── v1.0.10
Installed JSON ───────────────────────── v0.21.1
Installed StructTypes ────────────────── v1.1.0
Installed Interpolations ─────────────── v0.12.10
Installed Ratios ─────────────────────── v0.4.0
Installed AbstractFFTs ───────────────── v0.5.0
Installed MacroTools ─────────────────── v0.5.5
Installed NaNMath ────────────────────── v0.3.4
Installed PyCall ─────────────────────── v1.92.1
Installed SpecialFunctions ───────────── v0.10.3
Installed Gadfly ─────────────────────── v1.3.0
Installed FillArrays ─────────────────── v0.8.14
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed NLSolversBase ──────────────── v7.5.0
Installed StatsBase ──────────────────── v0.33.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed PositiveFactorizations ─────── v0.2.3
Installed SentinelArrays ─────────────── v1.2.16
Installed QuadGK ─────────────────────── v2.4.1
Installed PooledArrays ───────────────── v0.5.3
Installed Compose ────────────────────── v0.8.2
Installed FixedPointNumbers ──────────── v0.8.4
Installed IteratorInterfaceExtensions ── v1.0.0
Installed MKL_jll ────────────────────── v2020.2.254+0
Installed Loess ──────────────────────── v0.5.0
Installed IndirectArrays ─────────────── v0.5.1
Installed LineSearches ───────────────── v7.1.0
Installed DataStructures ─────────────── v0.17.20
Installed Distributions ──────────────── v0.23.8
Installed Optim ──────────────────────── v0.22.0
Installed Conda ──────────────────────── v1.4.1
Installed Requires ───────────────────── v1.1.0
Installed PyPlot ─────────────────────── v2.9.0
Installed UnPack ─────────────────────── v1.0.2
Installed StaticArrays ───────────────── v0.12.4
Installed CoupledFields ──────────────── v0.2.0
Installed Juno ───────────────────────── v0.8.4
Installed OrderedCollections ─────────── v1.3.1
Installed ForwardDiff ────────────────── v0.10.12
Installed DiffEqDiffTools ────────────── v1.7.0
Installed InvertedIndices ────────────── v1.0.0
Installed TableTraits ────────────────── v1.0.0
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed IterTools ──────────────────── v1.3.0
Installed URIParser ──────────────────── v0.4.1
Installed DocStringExtensions ────────── v0.8.3
Installed AxisAlgorithms ─────────────── v1.0.0
Installed Reexport ───────────────────── v0.2.0
Installed Colors ─────────────────────── v0.12.4
Installed Parameters ─────────────────── v0.12.1
Installed Missings ───────────────────── v0.4.4
Installed OffsetArrays ───────────────── v1.3.0
Installed StatsFuns ──────────────────── v0.9.5
Installed Distances ──────────────────── v0.9.1
Installed CSV ────────────────────────── v0.7.7
Installed SimilarityNetworkFusion ────── v0.1.0
Updating `~/.julia/environments/v1.6/Project.toml`
[6c1fd854] + SimilarityNetworkFusion v0.1.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[4fba245c] + ArrayInterface v2.13.3
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v1.0.1
[336ed68f] + CSV v0.7.7
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.8.3
[3da002f7] + ColorTypes v0.10.9
[5ae59095] + Colors v0.12.4
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[a81c6b42] + Compose v0.8.2
[8f4d0f93] + Conda v1.4.1
[d38c429a] + Contour v0.5.5
[7ad07ef1] + CoupledFields v0.2.0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.7
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.9.1
[31c24e10] + Distributions v0.23.8
[ffbed154] + DocStringExtensions v0.8.3
[7a1cc6ca] + FFTW v1.2.4
[f5851436] + FFTW_jll v3.3.9+5
[1a297f60] + FillArrays v0.8.14
[53c48c17] + FixedPointNumbers v0.8.4
[f6369f11] + ForwardDiff v0.10.12
[c91e804a] + Gadfly v1.3.0
[42e2da0e] + Grisu v1.0.0
[a1b4810d] + Hexagons v0.2.0
[9b13fd28] + IndirectArrays v0.5.1
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.10
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[e5e0dc1b] + Juno v0.8.4
[5ab0869b] + KernelDensity v0.5.1
[b964fa9f] + LaTeXStrings v1.2.0
[d3d80556] + LineSearches v7.1.0
[4345ca2d] + Loess v0.5.0
[856f044c] + MKL_jll v2020.2.254+0
[1914dd2f] + MacroTools v0.5.5
[442fdcdd] + Measures v0.3.1
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.4
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.4
[6fe1bfb0] + OffsetArrays v1.3.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[429524aa] + Optim v0.22.0
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.10
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[438e738f] + PyCall v1.92.1
[d330b81b] + PyPlot v2.9.0
[1fd47b50] + QuadGK v2.4.1
[c84ed2f1] + Ratios v0.4.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.1.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[91c51154] + SentinelArrays v1.2.16
[992d4aef] + Showoff v0.3.2
[6c1fd854] + SimilarityNetworkFusion v0.1.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[30578b45] + URIParser v0.4.1
[3a884ed6] + UnPack v1.0.2
[81def892] + VersionParsing v1.2.0
[efce3f68] + WoodburyMatrices v0.5.2
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ──────────────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building PyCall ─────────────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b6dff5fa725eff4f775f472acd86756d6e31fb02/build.log`
Building FFTW ───────────────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8b7c16b56936047ca41bf25effa137ae0b381ae8/build.log`
Building SimilarityNetworkFusion → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/a41e32aaf32ccd075980256df8c903924139547e/build.log`
Testing SimilarityNetworkFusion
Status `/tmp/jl_Nf7ANY/Project.toml`
[9e28174c] BinDeps v1.0.1
[336ed68f] CSV v0.7.7
[34da2185] Compat v3.18.0
[a93c6f00] DataFrames v0.21.7
[31c24e10] Distributions v0.23.8
[c91e804a] Gadfly v1.3.0
[d330b81b] PyPlot v2.9.0
[6c1fd854] SimilarityNetworkFusion v0.1.0
[8bb1440f] DelimitedFiles
[37e2e46d] LinearAlgebra
[de0858da] Printf
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_Nf7ANY/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[4fba245c] ArrayInterface v2.13.3
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v1.0.1
[336ed68f] CSV v0.7.7
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.8.3
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[a81c6b42] Compose v0.8.2
[8f4d0f93] Conda v1.4.1
[d38c429a] Contour v0.5.5
[7ad07ef1] CoupledFields v0.2.0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.7.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.1
[31c24e10] Distributions v0.23.8
[ffbed154] DocStringExtensions v0.8.3
[7a1cc6ca] FFTW v1.2.4
[f5851436] FFTW_jll v3.3.9+5
[1a297f60] FillArrays v0.8.14
[53c48c17] FixedPointNumbers v0.8.4
[f6369f11] ForwardDiff v0.10.12
[c91e804a] Gadfly v1.3.0
[42e2da0e] Grisu v1.0.0
[a1b4810d] Hexagons v0.2.0
[9b13fd28] IndirectArrays v0.5.1
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.10
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[e5e0dc1b] Juno v0.8.4
[5ab0869b] KernelDensity v0.5.1
[b964fa9f] LaTeXStrings v1.2.0
[d3d80556] LineSearches v7.1.0
[4345ca2d] Loess v0.5.0
[856f044c] MKL_jll v2020.2.254+0
[1914dd2f] MacroTools v0.5.5
[442fdcdd] Measures v0.3.1
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.4
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.4
[6fe1bfb0] OffsetArrays v1.3.0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[429524aa] Optim v0.22.0
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.10.1
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.10
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[438e738f] PyCall v1.92.1
[d330b81b] PyPlot v2.9.0
[1fd47b50] QuadGK v2.4.1
[c84ed2f1] Ratios v0.4.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[91c51154] SentinelArrays v1.2.16
[992d4aef] Showoff v0.3.2
[6c1fd854] SimilarityNetworkFusion v0.1.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[856f2bd8] StructTypes v1.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v1.0.2
[81def892] VersionParsing v1.2.0
[efce3f68] WoodburyMatrices v0.5.2
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
ERROR: LoadError: UndefVarError: tic not defined
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/SimilarityNetworkFusion/PYXOo/test/runtests.jl:10
[2] include(fname::String)
@ Base.MainInclude ./client.jl:444
[3] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/SimilarityNetworkFusion/PYXOo/test/runtests.jl:10
ERROR: Package SimilarityNetworkFusion errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19