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1.6.0-DEV-7d3dac44dc.log
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Julia Version 1.6.0-DEV.1148
Commit 7d3dac44dc (2020-10-06 21:26 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed PDMats ─────────────────────── v0.10.1
Installed DataAPI ────────────────────── v1.3.0
Installed TranscodingStreams ─────────── v0.9.5
Installed Twiddle ────────────────────── v1.1.2
Installed CategoricalArrays ──────────── v0.8.3
Installed DataFrames ─────────────────── v0.21.7
Installed Zlib_jll ───────────────────── v1.2.11+16
Installed Rmath ──────────────────────── v0.6.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed Compat ─────────────────────── v3.18.0
Installed BufferedStreams ────────────── v1.0.0
Installed IndexableBitVectors ────────── v1.0.0
Installed IntervalTrees ──────────────── v1.0.0
Installed PopGen ─────────────────────── v0.0.3
Installed Automa ─────────────────────── v0.7.0
Installed FileIO ─────────────────────── v1.4.3
Installed Parsers ────────────────────── v1.0.10
Installed GeneticVariation ───────────── v0.4.0
Installed DataValueInterfaces ────────── v1.0.0
Installed Tables ─────────────────────── v1.1.0
Installed VectorizationBase ──────────── v0.12.33
Installed StructTypes ────────────────── v1.1.0
Installed MacroTools ─────────────────── v0.5.5
Installed SpecialFunctions ───────────── v0.10.3
Installed JSON ───────────────────────── v0.21.1
Installed MultipleTesting ────────────── v0.4.1
Installed FillArrays ─────────────────── v0.9.6
Installed StatsBase ──────────────────── v0.33.1
Installed SentinelArrays ─────────────── v1.2.16
Installed PooledArrays ───────────────── v0.5.3
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed QuadGK ─────────────────────── v2.4.1
Installed IteratorInterfaceExtensions ── v1.0.0
Installed BioSymbols ─────────────────── v3.1.0
Installed DataStructures ─────────────── v0.18.7
Installed BenchmarkTools ─────────────── v0.5.0
Installed Polynomials ────────────────── v0.6.1
Installed SIMDPirates ────────────────── v0.8.25
Installed BGZFStreams ────────────────── v0.3.0
Installed JLD2 ───────────────────────── v0.2.3
Installed Requires ───────────────────── v1.1.0
Installed Distributions ──────────────── v0.23.12
Installed CodecZlib ──────────────────── v0.7.0
Installed SLEEFPirates ───────────────── v0.5.5
Installed BioCore ────────────────────── v2.0.5
Installed StaticArrays ───────────────── v0.12.4
Installed LoopVectorization ──────────── v0.8.26
Installed UnPack ─────────────────────── v1.0.2
Installed OrderedCollections ─────────── v1.3.1
Installed InvertedIndices ────────────── v1.0.0
Installed TableTraits ────────────────── v1.0.0
Installed CpuId ──────────────────────── v0.2.2
Installed RecipesBase ────────────────── v0.8.0
Installed YAML ───────────────────────── v0.4.2
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed BioSequences ───────────────── v1.1.0
Installed Combinatorics ──────────────── v0.7.0
Installed DocStringExtensions ────────── v0.8.3
Installed Reexport ───────────────────── v0.2.0
Installed OffsetArrays ───────────────── v1.3.0
Installed Missings ───────────────────── v0.4.4
Installed StatsFuns ──────────────────── v0.9.5
Installed CSV ────────────────────────── v0.7.7
Updating `~/.julia/environments/v1.6/Project.toml`
[af524d12] + PopGen v0.0.3
Updating `~/.julia/environments/v1.6/Manifest.toml`
[67c07d97] + Automa v0.7.0
[28d598bf] + BGZFStreams v0.3.0
[6e4b80f9] + BenchmarkTools v0.5.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[336ed68f] + CSV v0.7.7
[324d7699] + CategoricalArrays v0.8.3
[944b1d66] + CodecZlib v0.7.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.7
[864edb3b] + DataStructures v0.18.7
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.12
[ffbed154] + DocStringExtensions v0.8.3
[5789e2e9] + FileIO v1.4.3
[1a297f60] + FillArrays v0.9.6
[9bc6ac9d] + GeneticVariation v0.4.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.2.3
[682c06a0] + JSON v0.21.1
[bdcacae8] + LoopVectorization v0.8.26
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.4
[f8716d33] + MultipleTesting v0.4.1
[6fe1bfb0] + OffsetArrays v1.3.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[69de0a69] + Parsers v1.0.10
[f27b6e38] + Polynomials v0.6.1
[2dfb63ee] + PooledArrays v0.5.3
[af524d12] + PopGen v0.0.3
[1fd47b50] + QuadGK v2.4.1
[3cdcf5f2] + RecipesBase v0.8.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.1.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[21efa798] + SIMDPirates v0.8.25
[476501e8] + SLEEFPirates v0.5.5
[91c51154] + SentinelArrays v1.2.16
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.2
[3a884ed6] + UnPack v1.0.2
[3d5dd08c] + VectorizationBase v0.12.33
[ddb6d928] + YAML v0.4.2
[83775a58] + Zlib_jll v1.2.11+16
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SLEEFPirates → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/67ae90a18aa8c22bf159318300e765fbd89ddf6e/build.log`
Testing PopGen
Status `/tmp/jl_OoEVuY/Project.toml`
[6e4b80f9] BenchmarkTools v0.5.0
[336ed68f] CSV v0.7.7
[a93c6f00] DataFrames v0.21.7
[31c24e10] Distributions v0.23.12
[5789e2e9] FileIO v1.4.3
[9bc6ac9d] GeneticVariation v0.4.0
[033835bb] JLD2 v0.2.3
[bdcacae8] LoopVectorization v0.8.26
[f8716d33] MultipleTesting v0.4.1
[af524d12] PopGen v0.0.3
[2913bbd2] StatsBase v0.33.1
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_OoEVuY/Manifest.toml`
[67c07d97] Automa v0.7.0
[28d598bf] BGZFStreams v0.3.0
[6e4b80f9] BenchmarkTools v0.5.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[336ed68f] CSV v0.7.7
[324d7699] CategoricalArrays v0.8.3
[944b1d66] CodecZlib v0.7.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] CpuId v0.2.2
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.18.7
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.12
[ffbed154] DocStringExtensions v0.8.3
[5789e2e9] FileIO v1.4.3
[1a297f60] FillArrays v0.9.6
[9bc6ac9d] GeneticVariation v0.4.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.2.3
[682c06a0] JSON v0.21.1
[bdcacae8] LoopVectorization v0.8.26
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.4
[f8716d33] MultipleTesting v0.4.1
[6fe1bfb0] OffsetArrays v1.3.0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.10.1
[69de0a69] Parsers v1.0.10
[f27b6e38] Polynomials v0.6.1
[2dfb63ee] PooledArrays v0.5.3
[af524d12] PopGen v0.0.3
[1fd47b50] QuadGK v2.4.1
[3cdcf5f2] RecipesBase v0.8.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[21efa798] SIMDPirates v0.8.25
[476501e8] SLEEFPirates v0.5.5
[91c51154] SentinelArrays v1.2.16
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[856f2bd8] StructTypes v1.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.2
[3a884ed6] UnPack v1.0.2
[3d5dd08c] VectorizationBase v0.12.33
[ddb6d928] YAML v0.4.2
[83775a58] Zlib_jll v1.2.11+16
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
[ Info: Compiling VCF parser...
Test Summary: |
PopGen.jl | No tests
Testing PopGen tests passed