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18 Open 23 Closed
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Issues list

add msg.cfg parameter for one.sit.per.read in fit-hmm.R
#41 opened Dec 9, 2013 by gregpinero
Have MSG Log all version numbers of dependencies
#39 opened Nov 9, 2012 by gregpinero
summaryPlots.R - Single Individual Fix
#38 opened Nov 2, 2012 by gregpinero
Parsing config files - skip over blank values
#37 opened Oct 22, 2012 by gregpinero
/ Character in FASTA sequence identifiers causes MSG to think references are directories
#36 opened Oct 4, 2012 by gregpinero
2
summaryPlots.R - Generate Off-diagonal LOD on Thinned Data instead of full data
#34 opened Jul 19, 2012 by gregpinero
MSG incorrectly skips generating stampy index files for indiv's on some reruns
#33 opened Jun 26, 2012 by gregpinero
Handle slashes (and other chars) in barcodes
#32 opened Jun 20, 2012 by gregpinero
summaryPlots.R - On memory error in thinning - should show helpful message
#30 opened Apr 17, 2012 by gregpinero
Fix Stampy Issue: stampy: Error: invalid data stream - and remove ln -s workaround
#28 opened Feb 17, 2012 by gregpinero
Create more documentation - see notes
#27 opened Feb 14, 2012 by gregpinero
Include More Dependencies in Source/GitHub
#23 opened Jan 31, 2012 by gregpinero
Change Perl Modules to use strict mode
#22 opened Jan 25, 2012 by gregpinero
If extract_ref_alleles finds no references, it should die w/ useful error, con't pipeline w/ orig. genome
#18 opened Nov 1, 2011 by gregpinero
Investigate and Fix Strange Error Message
#14 opened Oct 6, 2011 by gregpinero
fit-hmm.R make maximum number of reads a parameter passed in from msg.cfg
#12 opened Sep 21, 2011 by gregpinero
Other MSG repos: Take down, or put up note that this is master repo
#8 opened Sep 6, 2011 by JaneliaSciComp
Change email for login for JanaliaSciComp user to something generic for Janelia
#5 opened Sep 6, 2011 by JaneliaSciComp
ProTip! Exclude everything labeled bug with -label:bug.