CMakeLists.txt

#
# Kmernator/src/CMakeLists.txt
#
#
# Kmernator Copyright (c) 2012, The Regents of the University of California, 
# through Lawrence Berkeley National Laboratory (subject to receipt of any 
# required approvals from the U.S. Dept. of Energy).  All rights reserved.
# 
# Redistribution and use in source and binary forms, with or without 
# modification, are permitted provided that the following conditions are met:
# 
# (1) Redistributions of source code must retain the above copyright notice, this 
# list of conditions and the following disclaimer.
# 
# (2) Redistributions in binary form must reproduce the above copyright notice, 
# this list of conditions and the following disclaimer in the documentation 
# and/or other materials provided with the distribution.
#  
# (3) Neither the name of the University of California, Lawrence Berkeley 
# National Laboratory, U.S. Dept. of Energy nor the names of its contributors may 
# be used to endorse or promote products derived from this software without 
# specific prior written permission.
#  
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 
# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 
# ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#  
# You are under no obligation whatsoever to provide any bug fixes, patches, or 
# upgrades to the features, functionality or performance of the source code 
# ("Enhancements") to anyone; however, if you choose to make your Enhancements 
# available either publicly, or directly to Lawrence Berkeley National 
# Laboratory, without imposing a separate written license agreement for such 
# Enhancements, then you hereby grant the following license: a  non-exclusive, 
# royalty-free perpetual license to install, use, modify, prepare derivative 
# works, incorporate into other computer software, distribute, and sublicense 
# such enhancements or derivative works thereof, in binary and source code form.
#              

set_source_files_properties( TwoBitSequence
                            PROPERTIES COMPILE_FLAGS "${OpenMP_CXX_FLAGS}"
                          )
set_source_files_properties( Sequence
                            PROPERTIES COMPILE_FLAGS "${OpenMP_CXX_FLAGS}"
                          )
set_source_files_properties( ReadSet
                            PROPERTIES COMPILE_FLAGS "${OpenMP_CXX_FLAGS}"
                          )

set_source_files_properties( Kmer
                            PROPERTIES COMPILE_FLAGS "${OpenMP_CXX_FLAGS}"
                          )
set_source_files_properties( Log
                            PROPERTIES COMPILE_FLAGS "${OpenMP_CXX_FLAGS}"
                          )
                          
                           
add_library( TwoBitSequence TwoBitSequence )
add_dependencies(TwoBitSequence REPLACE_VERSION_H)

add_library( Sequence Sequence TwoBitSequence )
add_dependencies(Sequence REPLACE_VERSION_H)

add_library( Kmer Kmer TwoBitSequence)
add_dependencies(Kmer REPLACE_VERSION_H)

add_library( ReadSet ReadSet )
add_dependencies(ReadSet REPLACE_VERSION_H)

FILE(GLOB HeaderFiles *.h)
INSTALL(FILES ${HeaderFiles} DESTINATION include)