DESCRIPTION

Package: HoneyBADGER
Type: Package
Title: HMM-integrated Bayesian approach for detecting CNV and LOH events using single-cell RNA-seq data
Version: 0.1
Date: 2017-2-27
Author: Jean Fan [aut, cre]
Maintainer: Jean Fan <jeanfan@fas.harvard.edu>
Description: The HoneyBADGER package implements a set of statistical methods for detecting copy number variation and loss of heterozygosity events using single-cell RNA-seq data.
License: GPL-3
LazyData: TRUE
Imports:
	GenomicRanges,
	RColorBrewer,
	caTools,
	ggplot2,
	reshape2,
  gridExtra,
	rjags,
	coda,
	parallel,
	HiddenMarkov,
	GenomicFeatures,
	AnnotationDbi,
	TxDb.Hsapiens.UCSC.hg19.knownGene
RoxygenNote: 6.0.1
Suggests: 
  knitr,
  rmarkdown
VignetteBuilder: knitr