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1. JEFworks-Lab/STdeconvolve JEFworks-Lab/STdeconvolve Public

   Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

   R 110 13

2. JEFworks-Lab/veloviz JEFworks-Lab/veloviz Public

   RNA-velocity informed embeddings for visualizing cellular trajectories

   R 43 3

3. JEFworks-Lab/MERINGUE JEFworks-Lab/MERINGUE Public

   characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

   R 59 5

4. JEFworks-Lab/HoneyBADGER JEFworks-Lab/HoneyBADGER Public

   HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

   R 96 31

5. MUDAN MUDAN Public

   Multi-sample Unified Discriminant ANalysis

   R 72 12

6. liger liger Public

   Lightweight Iterative Gene set Enrichment in R

   R 57 9