ENH: Bump ITK and replace http with https using script

tbirdso · tbirdso · commit c7cdbd8afaa4 · 2022-06-01T08:37:55.000-04:00
diff --git a/.clang-format b/.clang-format
@@ -4,7 +4,7 @@
 ## See: https://clang.llvm.org/docs/ClangFormatStyleOptions.html for details of each option
 ##
 ## The clang-format binaries can be downloaded as part of the clang binary distributions
-## from http://releases.llvm.org/download.html
+## from https://releases.llvm.org/download.html
 ##
 ## Use the script Utilities/Maintenance/clang-format.bash to faciliate
 ## maintaining a consistent code style.
diff --git a/.github/workflows/build-test-package.yml b/.github/workflows/build-test-package.yml
@@ -13,17 +13,17 @@ jobs:
           - os: ubuntu-18.04
             c-compiler: "gcc"
             cxx-compiler: "g++"
-            itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
+            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
             cmake-build-type: "MinSizeRel"
           - os: windows-2019
             c-compiler: "cl.exe"
             cxx-compiler: "cl.exe"
-            itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
+            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
             cmake-build-type: "Release"
           - os: macos-10.15
             c-compiler: "clang"
             cxx-compiler: "clang++"
-            itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
+            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
             cmake-build-type: "MinSizeRel"
 
     steps:
@@ -134,9 +134,9 @@ jobs:
     strategy:
       max-parallel: 2
       matrix:
-        python-version: [36, 37, 38, 39]
+        python-version: [37, 38, 39, 310]
         include:
-          - itk-python-git-tag: "v5.2.0.post2"
+          - itk-python-git-tag: "v5.3rc04"
 
     steps:
     - uses: actions/checkout@v2
@@ -172,7 +172,7 @@ jobs:
       max-parallel: 2
       matrix:
         include:
-          - itk-python-git-tag: "v5.2.0.post2"
+          - itk-python-git-tag: "v5.3rc04"
 
     steps:
     - uses: actions/checkout@v2
@@ -206,9 +206,9 @@ jobs:
     strategy:
       max-parallel: 2
       matrix:
-        python-version-minor: [6, 7, 8, 9]
+        python-version-minor: [7, 8, 9, 10]
         include:
-          - itk-python-git-tag: "v5.2.0.post2"
+          - itk-python-git-tag: "v5.3rc04"
 
     steps:
     - name: Get specific version of CMake, Ninja
@@ -241,7 +241,7 @@ jobs:
       run: |
         cd ../../im
         call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
-        set PATH="C:\P\grep;%PATH%"
+        set PATH=C:\P\grep;%PATH%
         set CC=cl.exe
         set CXX=cl.exe
         C:\Python3${{ matrix.python-version-minor }}-x64\python.exe C:\P\IPP\scripts\windows_build_module_wheels.py --py-envs "3${{ matrix.python-version-minor }}-x64" --no-cleanup
diff --git a/LICENSE b/LICENSE
@@ -1,7 +1,7 @@
 
                                  Apache License
                            Version 2.0, January 2004
-                        http://www.apache.org/licenses/
+                        https://www.apache.org/licenses/
 
    TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
 
@@ -193,7 +193,7 @@
    you may not use this file except in compliance with the License.
    You may obtain a copy of the License at
 
-       http://www.apache.org/licenses/LICENSE-2.0
+       https://www.apache.org/licenses/LICENSE-2.0
 
    Unless required by applicable law or agreed to in writing, software
    distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/README.rst b/README.rst
@@ -7,17 +7,17 @@ ITKMinimalPathExtraction
 Overview
 --------
 
-This is an `ITK <http://itk.org>`_ module that implements a minimal path
+This is an `ITK <https://itk.org>`_ module that implements a minimal path
 extraction framework based on Fast Marching arrival functions.
 
 A more detailed description can be found in
-`the Insight Journal article <http://hdl.handle.net/1926/1332>`_::
+`the Insight Journal article <https://hdl.handle.net/1926/1332>`_::
 
   Mueller, D.
   "Fast Marching Minimal Path Extraction in ITK"
   The Insight Journal. January-June, 2008.
-  http://hdl.handle.net/1926/1332
-  http://www.insight-journal.org/browse/publication/213
+  https://hdl.handle.net/1926/1332
+  https://www.insight-journal.org/browse/publication/213
 
 
 Installation
diff --git a/include/itkArrivalFunctionToPathFilter.h b/include/itkArrivalFunctionToPathFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkArrivalFunctionToPathFilter.hxx b/include/itkArrivalFunctionToPathFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkIterateNeighborhoodOptimizer.h b/include/itkIterateNeighborhoodOptimizer.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkPhysicalCentralDifferenceImageFunction.h b/include/itkPhysicalCentralDifferenceImageFunction.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkPhysicalCentralDifferenceImageFunction.hxx b/include/itkPhysicalCentralDifferenceImageFunction.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkSingleImageCostFunction.h b/include/itkSingleImageCostFunction.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkSingleImageCostFunction.hxx b/include/itkSingleImageCostFunction.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkSpeedFunctionPathInformation.h b/include/itkSpeedFunctionPathInformation.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkSpeedFunctionPathInformation.hxx b/include/itkSpeedFunctionPathInformation.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkSpeedFunctionToPathFilter.h b/include/itkSpeedFunctionToPathFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkSpeedFunctionToPathFilter.hxx b/include/itkSpeedFunctionToPathFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/setup.py b/setup.py
@@ -25,7 +25,7 @@
                      'functions.\n'
                      'Please refer to:\n'
                      'Mueller, D. "Fast Marching Minimal Path Extraction in ITK", '
-                     'Insight Journal, January-June 2008, http://hdl.handle.net/1926/1332.',
+                     'Insight Journal, January-June 2008, https://hdl.handle.net/1926/1332.',
     classifiers=[
         "License :: OSI Approved :: Apache Software License",
         "Programming Language :: Python",
diff --git a/src/itkIterateNeighborhoodOptimizer.cxx b/src/itkIterateNeighborhoodOptimizer.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/MinimalPathTest.h b/test/MinimalPathTest.h
@@ -8,8 +8,8 @@
   Version:   2.0
 
   Portions of this code are covered under the ITK and VTK copyright.
-  See VTKCopyright.txt or http://www.kitware.com/VTKCopyright.htm for details.
-  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
+  See VTKCopyright.txt or https://www.kitware.com/VTKCopyright.htm for details.
+  See ITKCopyright.txt or https://www.itk.org/HTML/Copyright.htm for details.
 
   This software is distributed WITHOUT ANY WARRANTY; without even
   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
diff --git a/test/Test_SpeedToPath_GradientDescent_2D.cxx b/test/Test_SpeedToPath_GradientDescent_2D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/Test_SpeedToPath_GradientDescent_3D.cxx b/test/Test_SpeedToPath_GradientDescent_3D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/Test_SpeedToPath_IterateNeighborhood_2D.cxx b/test/Test_SpeedToPath_IterateNeighborhood_2D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/Test_SpeedToPath_IterateNeighborhood_3D.cxx b/test/Test_SpeedToPath_IterateNeighborhood_3D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/Test_SpeedToPath_IterateNeighborhood_ExtendedSeed_2D.cxx b/test/Test_SpeedToPath_IterateNeighborhood_ExtendedSeed_2D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/Test_SpeedToPath_RegularStepGradientDescent_2D.cxx b/test/Test_SpeedToPath_RegularStepGradientDescent_2D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/Test_SpeedToPath_RegularStepGradientDescent_3D.cxx b/test/Test_SpeedToPath_RegularStepGradientDescent_3D.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

Original file line number	Diff line number	Diff line change
`@@ -6,7 +6,7 @@`
`6`	`6`	`* you may not use this file except in compliance with the License.`
`7`	`7`	`* You may obtain a copy of the License at`
`8`	`8`	`*`
`9`		`- * http://www.apache.org/licenses/LICENSE-2.0.txt`
	`9`	`+ * https://www.apache.org/licenses/LICENSE-2.0.txt`
`10`	`10`	`*`
`11`	`11`	`* Unless required by applicable law or agreed to in writing, software`
`12`	`12`	`* distributed under the License is distributed on an "AS IS" BASIS,`