Skip to content

Improvements to ISBI Tutorial #60

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
May 22, 2024
Merged

Improvements to ISBI Tutorial #60

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
705af08
changed import statement to be working with new utils repository
DanielaSchacherer May 22, 2024
0240027
changed Colab link
DanielaSchacherer May 22, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 7 additions & 7 deletions notebooks/labs/idc_isbi2024.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
"id": "view-in-github"
},
"source": [
"<a href=\"https://colab.research.google.com/github/ImagingDataCommons/isbi_tutorial_2024/blob/main/ISBI_2024_hands_on.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
"<a href=\"https://colab.research.google.com/github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/labs/idc_isbi2024.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
]
},
{
Expand Down Expand Up @@ -139,12 +139,12 @@
"from idc_index import index\n",
"\n",
"import sys\n",
"sys.path.append('./IDC-Tutorials/notebooks/labs/idc_isbi2024_utils/')\n",
"from utility_code.utils import create_slides_metadata\n",
"from utility_code.batch_iterator import BatchIterator\n",
"from utility_code.predictions import Predictions\n",
"from utility_code.heatmap import plot_colormap_legend, generate_heatmap\n",
"from utility_code.global_variables import CLASS_LABEL_TO_INDEX_MAP, NUM_CLASSES"
"sys.path.append('/content/IDC-Tutorials/notebooks/labs/')\n",
"from idc_isbi2024_utils.utils import create_slides_metadata\n",
"from idc_isbi2024_utils.batch_iterator import BatchIterator\n",
"from idc_isbi2024_utils.predictions import Predictions\n",
"from idc_isbi2024_utils.heatmap import plot_colormap_legend, generate_heatmap\n",
"from idc_isbi2024_utils.global_variables import CLASS_LABEL_TO_INDEX_MAP, NUM_CLASSES"
]
},
{
Expand Down