diff --git a/.travis.yml b/.travis.yml index 9edf386..6e78d23 100644 --- a/.travis.yml +++ b/.travis.yml @@ -14,6 +14,11 @@ matrix: - os: osx r: devel +r_packages: + - covr +after_success: + - Rscript -e 'covr::codecov()' + cache: packages sudo: false diff --git a/README.Rmd b/README.Rmd index de9879d..bb59f74 100644 --- a/README.Rmd +++ b/README.Rmd @@ -16,6 +16,7 @@ knitr::opts_chunk$set( # happyR [![Build Status](https://travis-ci.org/Illumina/happyR.svg?branch=master)](https://travis-ci.org/Illumina/happyR) +[![codecov](https://codecov.io/gh/Illumina/happyR/branch/master/graph/badge.svg)](https://codecov.io/gh/Illumina/happyR) Load [hap.py](https://github.com/Illumina/hap.py) results into an R data structure to enable simple plotting, comparisons and aggregation. The related package [happyCompare](https://github.com/Illumina/happyCompare) builds on happyR with statistical diff --git a/README.md b/README.md index 667a979..6ab1ab0 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ happyR ====== -[![Build Status](https://travis-ci.org/Illumina/happyR.svg?branch=master)](https://travis-ci.org/Illumina/happyR) +[![Build Status](https://travis-ci.org/Illumina/happyR.svg?branch=master)](https://travis-ci.org/Illumina/happyR) [![codecov](https://codecov.io/gh/Illumina/happyR/branch/master/graph/badge.svg)](https://codecov.io/gh/Illumina/happyR) Load [hap.py](https://github.com/Illumina/hap.py) results into an R data structure to enable simple plotting, comparisons and aggregation. The related package [happyCompare](https://github.com/Illumina/happyCompare) builds on happyR with statistical analysis of groups and replicates, as well as providing some more sophisticated plotting and reporting functionality. diff --git a/docs/articles/Precision-recall_curves.html b/docs/articles/Precision-recall_curves.html index 780ac49..2c8175c 100644 --- a/docs/articles/Precision-recall_curves.html +++ b/docs/articles/Precision-recall_curves.html @@ -65,7 +65,7 @@