Collision detection: technical debt

[Tom-Willemsen]

This is a follow-up ticket from #2936

In order of priority:

• Move the configuration files into the configuration area, rather than the same location as the code
• Refactor out the binary values used in OperatingMode
• Use argparse for argument parsing
• Look at different options for the config file format (more class based structure)
• Look at using an external library for transform matricies
• Modify the startup to not require a MYDIRCD environment variable
• Create an OPI for control
• Allow the user to input the sample size
• Add support for cylinders
• Split out renderer into separate program (maybe add into the GUI?). Look at good intermediate formats for the rendered image.