Merge pull request #448 from IDAS-Durham/version_update

Version update to 1.2.0

.github/workflows/check.yml

@@ -0,0 +1,67 @@
+name: Run linting and sanity checks
+
+on:
+  pull_request:
+    branches:
+      - master
+  push:
+    branches:
+      - master
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.8, 3.9]
+
+    steps:
+
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update -y
+        sudo apt-get install -y openmpi-bin
+        sudo apt install -y libhdf5-dev
+        sudo apt install -y libopenmpi-dev
+
+    - name: Install JUNE
+      run: |
+        python -m pip install --upgrade pip
+        python setup.py install
+
+    - name: Lint with black and flake8
+      run: |
+        pip install flake8
+        pip install black
+        black --check june
+        black --check test_june
+        # stop the build if there are Python syntax errors or undefined names
+        # flake8 . --count --show-source --statistics
+        # flake8 .
+        flake8 june
+        flake8 test_june
+
+    - name: Get JUNE data
+      run: bash scripts/get_june_data.sh
+
+    - name: Test with pytest
+      run: |
+        pytest test_june --cov=june --cov-report xml
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v2
+      with:
+        token: ${{secrets.CODECOV_TOKEN}}
+        verbose: true
+
+    - name: Test all cells in ipynb for errors
+      run: |
+        pip install jupyter
+        jupyter nbconvert --NotebookClient.kernel_name=python3 --to notebook --inplace --execute Notebooks/quickstart.ipynb

.gitignore

@@ -5,12 +5,10 @@ test_june/unit/results/
 .DS_Store
 test_june/results/
 .idea/
-data
+data/
 *__pycache__*
 *.ipynb_checkpoints*
 *.pyc
-*.ipynb
-*.csv
 *.pkl
 *.egg-info
 .env
@@ -25,3 +23,9 @@ dist/
 *.prof
 *.svg
 test_results
+.venv
+**/tester_*
+**/results/**
+
+post_checkpoint_results/
+pre_checkpoint_results

CONTRIBUTING

@@ -0,0 +1,10 @@
+ - We use [black](https://github.com/psf/black) for coding style.
+ - We use flake8 to detect errors on Git push, we recommend you do this on your code before creating a pull request.
+ - License is available in LICENSE, by submitting code you are agreeing to publish your code with that license.
+ - Please make a pull request for any changes which you wish to add
+ - For imports which are just for type checks, to avoid cyclic dependencies, please surround the imports with:
+
+
+    from typing import TYPE_CHECKING
+    if TYPE_CHECKING:
+        import ...