diff --git a/CHANGES.md b/CHANGES.md index f6bca2e..5f77972 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,3 +1,10 @@ +### 1.11.0 +* bam_stats - new rna switch to give more appropriate insert size stats +* bam_stats - more robust handling of optional RG header entries +* bam_stats - allows streaming IO (thanks to @jenniferliddle) +* bwa_mem.pl - Handle `'` in RG header line/IDs +* Generally improved version handling and updated versions of some tools. + ### 1.9.1 * Changed final log folder to include sample name and analysis type, prevents clash when lots of data to same output loc. diff --git a/MANIFEST b/MANIFEST index 5f1a6b8..55b51a1 100644 --- a/MANIFEST +++ b/MANIFEST @@ -1,4 +1,3 @@ -bin/bam_stats bin/bam_stats.pl bin/bam_to_sra_sub.pl bin/bamToBw.pl @@ -10,9 +9,7 @@ bin/monitor.pl bin/xml_to_bas.pl c/bam_access.c c/bam_access.h -c/bam_access.o c/bam_stats.c -c/bam_stats.o c/dbg.h c/khash.h CHANGES.md diff --git a/docs.tar.gz b/docs.tar.gz index 2213812..39837c4 100644 Binary files a/docs.tar.gz and b/docs.tar.gz differ diff --git a/lib/PCAP.pm b/lib/PCAP.pm index 2129fa9..4101943 100644 --- a/lib/PCAP.pm +++ b/lib/PCAP.pm @@ -24,7 +24,7 @@ use strict; use Const::Fast qw(const); use base 'Exporter'; -our $VERSION = '1.10.0'; +our $VERSION = '1.11.0'; our @EXPORT = qw($VERSION); const my $LICENSE =>