From e56129f7162badebde59c808ef677d3acc77ff7a Mon Sep 17 00:00:00 2001 From: Saman Ehsan Date: Tue, 30 Jul 2019 10:48:35 -0400 Subject: [PATCH] Increase Optimus retries (#160) * Update pipeline-tools version * Increase Optimus maxRetries option --- adapter_pipelines/Optimus/adapter.wdl | 2 +- adapter_pipelines/Optimus/options.json | 2 +- adapter_pipelines/cellranger/adapter.wdl | 2 +- adapter_pipelines/ss2_single_end/adapter.wdl | 2 +- adapter_pipelines/ss2_single_sample/adapter.wdl | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/adapter_pipelines/Optimus/adapter.wdl b/adapter_pipelines/Optimus/adapter.wdl index 03ce83c5..e1a76a92 100644 --- a/adapter_pipelines/Optimus/adapter.wdl +++ b/adapter_pipelines/Optimus/adapter.wdl @@ -139,7 +139,7 @@ workflow AdapterOptimus { Int max_cromwell_retries = 0 Boolean add_md5s = false - String pipeline_tools_version = "v0.56.0" + String pipeline_tools_version = "v0.56.1" call GetInputs as prep { input: diff --git a/adapter_pipelines/Optimus/options.json b/adapter_pipelines/Optimus/options.json index 136922f6..6f49fc9b 100644 --- a/adapter_pipelines/Optimus/options.json +++ b/adapter_pipelines/Optimus/options.json @@ -3,6 +3,6 @@ "read_from_cache": true, "backend": "PAPIv2", "default_runtime_attributes": { - "maxRetries": 1 + "maxRetries": 3 } } diff --git a/adapter_pipelines/cellranger/adapter.wdl b/adapter_pipelines/cellranger/adapter.wdl index 23998653..00519db9 100644 --- a/adapter_pipelines/cellranger/adapter.wdl +++ b/adapter_pipelines/cellranger/adapter.wdl @@ -149,7 +149,7 @@ workflow Adapter10xCount { Int max_cromwell_retries = 0 Boolean add_md5s = false - String pipeline_tools_version = "v0.56.0" + String pipeline_tools_version = "v0.56.1" call GetInputs { input: diff --git a/adapter_pipelines/ss2_single_end/adapter.wdl b/adapter_pipelines/ss2_single_end/adapter.wdl index 1ca227e5..9d06eef6 100644 --- a/adapter_pipelines/ss2_single_end/adapter.wdl +++ b/adapter_pipelines/ss2_single_end/adapter.wdl @@ -70,7 +70,7 @@ workflow AdapterSmartSeq2SingleCellUnpaired { Int max_cromwell_retries = 0 Boolean add_md5s = false - String pipeline_tools_version = "v0.56.0" + String pipeline_tools_version = "v0.56.1" call GetInputs as prep { input: diff --git a/adapter_pipelines/ss2_single_sample/adapter.wdl b/adapter_pipelines/ss2_single_sample/adapter.wdl index 1ba169f3..b5f564b6 100644 --- a/adapter_pipelines/ss2_single_sample/adapter.wdl +++ b/adapter_pipelines/ss2_single_sample/adapter.wdl @@ -70,7 +70,7 @@ workflow AdapterSmartSeq2SingleCell{ Int max_cromwell_retries = 0 Boolean add_md5s = false - String pipeline_tools_version = "v0.56.0" + String pipeline_tools_version = "v0.56.1" call GetInputs as prep { input: