DESCRIPTION

Package: epiRomics
Type: Package
Title: Epigenomic Analysis Package Built for R (epiRomics)
Version: 0.1.3
Authors@R: 
    c(person(given = "Alex M.",
             family = "Mawla",
             role = c("aut", "cre"),
             email = "ammawla@ucdavis.edu"),
      person(given = "Huising Lab",
             family = "@ University of California, Davis",
             role = "cph"))
Maintainer: Alex M. Mawla <ammawla@ucdavis.edu>
Description: A package designed to integrate various levels of epigenomic
    information, including, but not limited to ChIP and Histone
    next-generation sequencing. Regulatory network analysis can be done by
    using combinatory approaches to infer regions of significance, such as
    enhancers. Downstream analysis can identify co-occurance of epigenomic
    data located at regions of interest. Finally, this package allows for
    various results to be visualized.  This package is currently in
    development. Please contact <ammawla@ucdavis.edu> for suggestions,
    feedback, or bug reporting.
License: MIT + file LICENSE
Depends:
    R (>= 4.0.0)
biocViews:
Imports:
    AnnotationDbi (>= 1.55.1),
    annotatr (>= 1.18.1),
    BiocGenerics (>= 0.38.0),
    BiocManager (>= 1.30.16),
    ChIPseeker (>= 1.28.3),
    data.table (>= 1.12.8),
    GenomeInfoDb (>= 1.28.1),
    GenomicFeatures (>= 1.44.1),
    GenomicRanges (>= 1.44.0),
    Gviz (>= 1.36.2),
    igraph (>= 1.2.6),
    IRanges (>= 2.26.0),
    methods (>= 4.0.2),
    party (>= 1.3.3),
    plyr (>= 1.8.6),
    rtracklayer (>= 1.52.1),
    utils
Suggests: 
    covr,
    org.Hs.eg.db (>= 3.13.0),
    TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.13.0),
    knitr,
    testthat (>= 3.0.0),
    rmarkdown,
    enrichplot,
    pkgdown
VignetteBuilder: 
    knitr
Remotes:
    GuangchuangYu/enrichplot,
    GuangchuangYu/ChipSeeker
Config/testthat/edition: 3
ByteCompile: true
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2