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Improve syntax of single initial condition file.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

low priorityLow priority.Low priority.

Status: Open.

Feature

#55 In HopkinsIDD/flepiMoP;

· jcblemai opened on May 23, 2023

Update initial condition specifications and use of geodata file

bugDefects or errors in the code.Defects or errors in the code.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

high priorityHigh priority.High priority.

medium priorityMedium priority.Medium priority.

Status: Open.

Bug

#82 In HopkinsIDD/flepiMoP;

· shauntruelove opened on Oct 25, 2023

Multiple problems with timeseries parameters

bugDefects or errors in the code.Defects or errors in the code.

medium priorityMedium priority.Medium priority.

Status: Open.

Bug

#125 In HopkinsIDD/flepiMoP;

· alsnhll opened on Nov 9, 2023

Switch From Using Confuse to Pydantic For Config Parsing

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#254 In HopkinsIDD/flepiMoP;

· TimothyWillard opened on Jul 17, 2024

Add check that the input data all align.

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#32 In HopkinsIDD/flepiMoP;

· shauntruelove opened on Apr 18, 2023

outcome_modifier description format

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

low priorityLow priority.Low priority.

Status: Open.

Feature

#77 In HopkinsIDD/flepiMoP;

· kjsato opened on Oct 23, 2023

[Feature request]: support computed / derived parameters within configuration files

configRelating to configuration files or their framework.Relating to configuration files or their framework.

gempyorConcerns the Python core.Concerns the Python core.

low priorityLow priority.Low priority.

Status: Open.

Feature

#377 In HopkinsIDD/flepiMoP;

· pearsonca opened on Oct 31, 2024

[Feature request]: Add set_zero_to Field To Individual Statistics Entries In Config

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

low priorityLow priority.Low priority.

quick issueShort or easy fix.Short or easy fix.

r-inferenceRelating to the R inference package.Relating to the R inference package.

Status: Open.

Feature

#341 In HopkinsIDD/flepiMoP;

· TimothyWillard opened on Oct 10, 2024

Using undefined parameter in a symbolic rate expression (transitions) slips thru input checks and results in uninformative error

bugDefects or errors in the code.Defects or errors in the code.

medium priorityMedium priority.Medium priority.

Status: Open.

Bug

#294 In HopkinsIDD/flepiMoP;

· twallema opened on Aug 9, 2024

Move hardcoded percent_day_away=0.5 to config file

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#256 In HopkinsIDD/flepiMoP;

· twallema opened on Jul 17, 2024

Gempyor check for unused config arguments

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Bug

#145 In HopkinsIDD/flepiMoP;

· jcblemai opened on Nov 20, 2023

Explore addition of Explicit Contact Matrices

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#171 In HopkinsIDD/flepiMoP;

· shauntruelove opened on Feb 26, 2024

change code to read parquet or csv for any input files

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

low priorityLow priority.Low priority.

Status: Open.

Feature

#51 In HopkinsIDD/flepiMoP;

· shauntruelove opened on May 10, 2023

stochastic option in config

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#43 In HopkinsIDD/flepiMoP;

· alsnhll opened on Apr 21, 2023

Need to strip inference and flepimop in general of all US/COVID specific references

configRelating to configuration files or their framework.Relating to configuration files or their framework.

documentationRelating to ReadMEs / gitbook / vignettes / etc.Relating to ReadMEs / gitbook / vignettes / etc.

good first issueGood for newcomers.Good for newcomers.

low priorityLow priority.Low priority.

Status: Open.

Feature

#134 In HopkinsIDD/flepiMoP;

· alsnhll opened on Nov 15, 2023

add config option in header to run scripts before any aspect of model run

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

good first issueGood for newcomers.Good for newcomers.

low priorityLow priority.Low priority.

quick issueShort or easy fix.Short or easy fix.

Status: Open.

Feature

#131 In HopkinsIDD/flepiMoP;

· alsnhll opened on Nov 14, 2023

Gempyor handle file handling propagation for inference run:

batchRelating to batch processing.Relating to batch processing.

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#102 In HopkinsIDD/flepiMoP;

· jcblemai opened on Oct 30, 2023

Allow seir and outcomes modifier sections to work without scenarios

configRelating to configuration files or their framework.Relating to configuration files or their framework.

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#89 In HopkinsIDD/flepiMoP;

· alsnhll opened on Oct 26, 2023

Change VALIDATION_DATE to FORECAST_DATE

configRelating to configuration files or their framework.Relating to configuration files or their framework.

gempyorConcerns the Python core.Concerns the Python core.

low priorityLow priority.Low priority.

r-inferenceRelating to the R inference package.Relating to the R inference package.

Status: Open.

Feature

#160 In HopkinsIDD/flepiMoP;

· jcblemai opened on Jan 22, 2024

Mobility model only applied if more than one disease state in proportional_to

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#265 In HopkinsIDD/flepiMoP;

· twallema opened on Jul 23, 2024

Config fails when there are no parameters

bugDefects or errors in the code.Defects or errors in the code.

gempyorConcerns the Python core.Concerns the Python core.

low priorityLow priority.Low priority.

Status: Open.

Bug

#150 In HopkinsIDD/flepiMoP;

· saraloo opened on Dec 11, 2023

Make dayofyear and dayofweek accessible to compartment formula parser

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#95 In HopkinsIDD/flepiMoP;

· jcblemai opened on Oct 30, 2023

[Feature request]: Arbitrary Configuration Annotations Via comment Field

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

low priorityLow priority.Low priority.

Status: Open.

Feature

#442 In HopkinsIDD/flepiMoP;

· TimothyWillard opened on Jan 6, 2025

[Feature request]: Top Level files Section To Contain Central Repository For File Backed Datasets

configRelating to configuration files or their framework.Relating to configuration files or their framework.

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#443 In HopkinsIDD/flepiMoP;

· TimothyWillard opened on Jan 6, 2025

[Feature request]: Dynamic Subpopulation Mobility

enhancementRequest for improvement or addition of new feature(s).Request for improvement or addition of new feature(s).

gempyorConcerns the Python core.Concerns the Python core.

medium priorityMedium priority.Medium priority.

Status: Open.

Feature

#444 In HopkinsIDD/flepiMoP;

· TimothyWillard opened on Jan 6, 2025