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@HTGenomeAnalysisUnit

HT Genome Analysis Unit

Genome Analysis Unit in the Population Genomic theme

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  1. SCE-VCF SCE-VCF Public

    Sample Contamination Estimate from VCF

    Nim 19

  2. nf-pipeline-regenie nf-pipeline-regenie Public

    GWAS and rare variants tests at high speed using regenie

    Nextflow 13 3

  3. csq_selector csq_selector Public

    Filter and select variant consequence annotations from snpEff, VEP or bcftools

    Nim 4

  4. nim-simpleargs nim-simpleargs Public

    A simple command line argument parser with minimum dependencies

    Nim 3

  5. Useful_tips Useful_tips Public

    Tips for various bioinformatic tasks

    3

  6. rsid_tools rsid_tools Public

    Small utilities to play with dbSNP rsID: annotate rsID for a var or get position for an rsID

    Nim 2

Repositories

Showing 10 of 34 repositories
  • csq_selector Public

    Filter and select variant consequence annotations from snpEff, VEP or bcftools

    HTGenomeAnalysisUnit/csq_selector’s past year of commit activity
    Nim 4 MIT 0 0 0 Updated Mar 5, 2025
  • easy_key_annotation Public

    Easy annotate a table from multiple sources using a key column

    HTGenomeAnalysisUnit/easy_key_annotation’s past year of commit activity
    Python 0 0 0 0 Updated Feb 27, 2025
  • nf_core_configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    HTGenomeAnalysisUnit/nf_core_configs’s past year of commit activity
    Nextflow 0 MIT 293 0 0 Updated Feb 10, 2025
  • Useful_tips Public

    Tips for various bioinformatic tasks

    HTGenomeAnalysisUnit/Useful_tips’s past year of commit activity
    3 0 0 0 Updated Jan 25, 2025
  • tre-containers Public

    Containers recipes for G&H TRE analyses

    HTGenomeAnalysisUnit/tre-containers’s past year of commit activity
    R 1 0 0 1 Updated Jan 16, 2025
  • CellBender Public Forked from broadinstitute/CellBender

    CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

    HTGenomeAnalysisUnit/CellBender’s past year of commit activity
    Python 0 BSD-3-Clause 62 0 0 Updated Jan 16, 2025
  • snpboost Public Forked from hklinkhammer/snpboost

    An algorithm to apply statistical boosting on genotype data via a batch-based approach.

    HTGenomeAnalysisUnit/snpboost’s past year of commit activity
    R 0 1 0 0 Updated Jan 8, 2025
  • nf-pipeline-regenie Public

    GWAS and rare variants tests at high speed using regenie

    HTGenomeAnalysisUnit/nf-pipeline-regenie’s past year of commit activity
    Nextflow 13 MIT 3 0 0 Updated Dec 17, 2024
  • dx-wdl-regenie Public

    A WDL workflow to run regenie on DNANexus RAP

    HTGenomeAnalysisUnit/dx-wdl-regenie’s past year of commit activity
    WDL 0 0 0 0 Updated Dec 9, 2024
  • rsid_tools Public

    Small utilities to play with dbSNP rsID: annotate rsID for a var or get position for an rsID

    HTGenomeAnalysisUnit/rsid_tools’s past year of commit activity
    Nim 2 0 0 0 Updated Dec 5, 2024
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