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Merge branch 'main' of github.com:SciTools/python-stratify into auto_pr_labels
* 'main' of github.com:SciTools/python-stratify: Updated environment lockfiles (SciTools#129) adopting sort-all pre-commit git hook (SciTools#128) Updated environment lockfiles (SciTools#127) Bump scitools/workflows from 2023.05.0 to 2023.06.0 (SciTools#126) Bump pypa/cibuildwheel from 2.13.0 to 2.13.1 (SciTools#125) Updated environment lockfiles (SciTools#124) adding a CITATION.cff and a GHA to check it (SciTools#123) Updated environment lockfiles (SciTools#122) Adding a GHA to check for stale issues and pull-requests (SciTools#120) Rebase to upstream
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‎.github/workflows/ci-citation.yml‎

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name: ci-citation
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on:
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pull_request:
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paths:
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- "CITATION.cff"
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push:
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paths:
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- "CITATION.cff"
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workflow_dispatch:
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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validate:
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name: "validate"
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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- name: "check CITATION.cff"
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uses: citation-file-format/cffconvert-github-action@2.0.0
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with:
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args: "--validate"

‎.github/workflows/ci-locks.yml‎

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jobs:
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refresh_lockfiles:
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uses: scitools/workflows/.github/workflows/refresh-lockfiles.yml@2023.05.0
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uses: scitools/workflows/.github/workflows/refresh-lockfiles.yml@2023.06.0
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secrets: inherit

‎.github/workflows/ci-manifest.yml‎

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jobs:
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manifest:
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name: "check-manifest"
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uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.05.0
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uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.06.0

‎.github/workflows/ci-wheels.yml‎

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fetch-depth: 0
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- name: "build ${{ matrix.os }} (${{ matrix.arch }}) wheels"
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uses: pypa/cibuildwheel@v2.13.0
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uses: pypa/cibuildwheel@v2.13.1
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env:
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CIBW_SKIP: "cp36-* cp37-* pp* *-musllinux*"
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CIBW_ARCHS: ${{ matrix.arch }}

‎.github/workflows/stale.yml‎

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# See https://github.com/actions/stale
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name: Stale issues and pull-requests
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on:
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schedule:
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# Run once a day
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# N.B. "should" be quoted, according to
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# https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#onschedule
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- cron: "0 0 * * *"
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jobs:
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stale:
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if: "github.repository == 'SciTools/python-stratify'"
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runs-on: ubuntu-latest
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env:
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DAYS_BEFORE_STALE: 500
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DAYS_BEFORE_CLOSE: 28
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steps:
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- uses: actions/stale@v8
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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# Idle number of days before marking issues/prs stale.
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days-before-stale: ${{ env.DAYS_BEFORE_STALE }}
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# Idle number of days before closing stale issues/prs.
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days-before-close: ${{ env.DAYS_BEFORE_CLOSE }}
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# Comment on the staled issues.
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stale-issue-message: |
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In order to maintain a backlog of relevant issues, we automatically label them as stale after ${{ env.DAYS_BEFORE_STALE }} days of inactivity.
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If this issue is still important to you, then please comment on this issue and the stale label will be removed.
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Otherwise this issue will be automatically closed in ${{ env.DAYS_BEFORE_CLOSE }} days time.
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# Comment on the staled prs.
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stale-pr-message: |
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In order to maintain a backlog of relevant PRs, we automatically label them as stale after ${{ env.DAYS_BEFORE_STALE }} days of inactivity.
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If this PR is still important to you, then please comment on this PR and the stale label will be removed.
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Otherwise this PR will be automatically closed in ${{ env.DAYS_BEFORE_CLOSE }} days time.
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# Comment on the staled issues while closed.
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close-issue-message: |
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This stale issue has been automatically closed due to a lack of community activity.
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If you still care about this issue, then please either:
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* Re-open this issue, if you have sufficient permissions, or
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* Add a comment pinging `@SciTools/stratify-maintainers` who will re-open on your behalf.
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# Comment on the staled prs while closed.
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close-pr-message: |
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This stale PR has been automatically closed due to a lack of community activity.
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If you still care about this PR, then please either:
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* Re-open this PR, if you have sufficient permissions, or
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* Add a comment pinging `@SciTools/stratify-maintainers` who will re-open on your behalf.
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# Label to apply on staled issues.
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stale-issue-label: Stale
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# Label to apply on staled prs.
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stale-pr-label: Stale
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# Labels on issues exempted from stale.
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exempt-issue-labels:
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"Status: Blocked,Status: Decision Required"
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# Labels on prs exempted from stale.
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exempt-pr-labels:
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"Status: Blocked,Status: Decision Required"
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# Max number of operations per run.
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operations-per-run: 300
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# Remove stale label from issues/prs on updates/comments.
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remove-stale-when-updated: true
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# Order to get issues/PRs.
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ascending: true
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# Exempt all issues/prs with milestones from stale.
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exempt-all-milestones: true

‎.pre-commit-config.yaml‎

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name: isort (cython)
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types: [file, cython]
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args: [--filter-files]
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- repo: https://github.com/aio-libs/sort-all
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rev: "v1.2.0"
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hooks:
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- id: sort-all
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types: [file, python]

‎CITATION.cff‎

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cff-version: 1.2.0
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message: "If Python-Stratify played an important part in your research then please add us to your reference list by using the references below."
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authors:
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- family-names: "Elson"
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given-names: "Phil"
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orcid: "https://orcid.org/0000-0001-6360-749X"
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- family-names: "Little"
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given-names: "Bill"
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orcid: "https://orcid.org/0000-0002-1345-9465"
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- family-names: "Andela"
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given-names: "Bouwe"
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orcid: "https://orcid.org/0000-0001-9005-8940"
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- family-names: "Dreyer"
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given-names: "Laura"
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orcid: "https://orcid.org/0009-0006-6310-3658"
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- family-names: "Fernandes"
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given-names: "Filipe"
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orcid: "https://orcid.org/0000-0003-4165-2913"
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- family-names: "Rol"
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given-names: "Evert"
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orcid: "https://orcid.org/0000-0001-8357-4453"
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- family-names: "Wright"
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given-names: "Henry"
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orcid: "https://orcid.org/0009-0005-1489-760X"
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- family-names: "Yeo"
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given-names: "Martin"
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orcid: "https://orcid.org/0009-0000-6857-560X"
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title: "python-stratify"
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abstract: "Interpolation for restratification, particularly useful for Nd vertical interpolation of atmospheric and oceanographic datasets"
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license: "BSD-3-Clause"
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license-url: "https://spdx.org/licenses/BSD-3-Clause.html"
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date-released: "2018-06-01"
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doi: "10.5281/zenodo.7863857"
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repository-code: "https://github.com/SciTools/python-stratify"
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type: "software"

‎MANIFEST.in‎

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prune requirements
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recursive-include requirements *.txt
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recursive-include src *.py *.pyx
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include CITATION.cff
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exclude .flake8
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exclude .gitignore
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exclude .pre-commit-config.yaml

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