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Two small bugs #157

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Two small bugs #157

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@scfurl scfurl commented May 20, 2020

  1. I could not get projectBulkATAC to work without as.array(.getAssay(subATAC, "counts"))
  2. I am probably the only relatively sensible person who uses spaces in folder names (as I am forced to with cloud syncing services such as dropbox and onedrive), but calls to cl tools break on my system unless I wrap directories in single quotes

jgranja24 and others added 30 commits May 11, 2020 20:22
@jgranja24
change to paste in peakAnnoEnrichment
5386336
@jgranja24
bugfix
8c9e0bc
@jgranja24
include dot removal in correlate matrices
dfbd590
@jgranja24
update documentation
a0a2d10
@jgranja24
Update DESCRIPTION
2a16186
@jgranja24
bugfix returning 1 peak from peakset
9ad0c51
@jgranja24
add log messages to peak coaccessibility
dcf5c69
@jgranja24
check for space in output directory
ee7f521
@jgranja24
getTrajectory force class structure
f0b1c8d
@jgranja24
force trajectory between 0 and 100 and numeric
7011965
@jgranja24
update incase normQ is length 1
988ab93
@jgranja24
Update LoggerUtils.R
cb5572f
@jgranja24
disable chrPrefix
0660b4e
@scfurl
fix to declare assay as an array
6335e28
@scfurl
add single quotes to allow unix mv to copy filenames with spaces
bcbf41f
@scfurl
fix for file paths containing spaces when calling macs2
5f45317
@scfurl
fixed system calls to macs2 where filenames have spaces
2be85a2
@scfurl
added projectData which projects single cells onto single cells
3471c93
@scfurl
nm
799d296
@scfurl
nm
4bcb9bb
allow spaces
a417fc9
@scfurl
bug in FilterCells saving date
3be5d39
@scfurl
Add exportMonocle3 function
91910c1
@scfurl
allow spaces
271492d
@scfurl
add featureDF to GRanges function
57cf0b5
@scfurl
Untrack files in .gitignore
56a5dd1
@scfurl
fixed Monocle3 export of GeneActivityMatrix
57881be
@scfurl
reorder seqlevels pulling from geneAnnotation slot
627b7ba
@scfurl
multiple arrows
2534071
@scfurl
Merge branch 'master' of https://github.com/scfurl/ArchR
03b4ce7
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@scfurl @jgranja24