Dev project bulk atac2 #1390
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Dev project bulk atac2 #1390
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rbind fails if mat isnt a sparseMatrix. this change makes safeSubset flexible to accept either matrix or dgCMatrix input
the params section of ArchRProj@embeddings needs to be a list rather than a vector. If a vector, when you try to pass a vector to dimsToUse, you cant have a vector of a vector so this gets converted to dimsToUse1, dimsToUse2, dimsToUse3 etc instead of dimsToUse = c(1,2,3). Discussed in #1379 (comment)
dimsToUse has to be the intersection of the dimensions that pass corCutOff and the dimensions originally listed in dimsToUse. also, the column subsetting of simRD has to happen before the second if statement to check if the dimensions match, otherwise this if statement will always fail and exit with an error
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Addressing #1379
Issues with
projectBulkATAC()whendimsToUsehas been set.