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Gray Lab

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  1. DL4Proteins-notebooks DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook 534 83

  2. IgFold IgFold Public

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python 391 70

  3. IgLM IgLM Public

    Generative Language Modeling for Antibody Design

    Python 173 30

  4. GeoDock GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python 98 17

  5. FLAb FLAb Public

    Fitness landscapes for antibodies

    Python 91 14

  6. AlphaRED AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Python 85 16

Repositories

Showing 10 of 18 repositories
  • AF2Dock Public
    Graylab/AF2Dock’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Dec 4, 2025
  • DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Graylab/DL4Proteins-notebooks’s past year of commit activity
    Jupyter Notebook 534 MIT 83 4 1 Updated Sep 22, 2025
  • dockqc Public

    Benchmark of protein-carbohydrate interactions

    Graylab/dockqc’s past year of commit activity
    Python 0 2 0 0 Updated Sep 9, 2025
  • FLAb Public

    Fitness landscapes for antibodies

    Graylab/FLAb’s past year of commit activity
    Python 91 14 7 0 Updated Sep 1, 2025
  • DFMDock Public

    DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.

    Graylab/DFMDock’s past year of commit activity
    Python 51 MIT 7 2 2 Updated Jul 22, 2025
  • picap Public

    CAPSIF2 and PiCAP

    Graylab/picap’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Jun 5, 2025
  • AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Graylab/AlphaRED’s past year of commit activity
    Python 85 MIT 16 8 3 Updated Jun 5, 2025
  • MaskedProteinEnT Public
    Graylab/MaskedProteinEnT’s past year of commit activity
    Python 12 5 0 2 Updated Dec 2, 2024
  • IgLM Public

    Generative Language Modeling for Antibody Design

    Graylab/IgLM’s past year of commit activity
    Python 173 30 5 0 Updated Oct 5, 2024
  • GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Graylab/GeoDock’s past year of commit activity
    Python 98 MIT 17 6 0 Updated Jul 29, 2024
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