environment.yml

name: tsrnasearch_env
channels:
  - r
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - curl=7.64.0
  - cutadapt=1.18
  - fastqc=0.11.9
  - ghostscript=9.22
  - libgit2=0.27.8
  - numpy=1.15.4
  - openssl=1.0.2u
  - pandoc=2.10
  - pip=20.1.1
  - pigz=2.3.4
  - python=2.7.15
  - r=3.5.1
  - r-boot=1.3_20
  - r-checkpoint=0.4.4
  - r-class=7.3_14
  - r-cluster=2.0.7_1
  - r-codetools=0.2_15
  - r-curl=3.2
  - r-deployrrserve=9.0.0
  - r-doparallel=1.0.13
  - r-foreach=1.5.0
  - r-foreign=0.8_70
  - r-iterators=1.0.10
  - r-jsonlite=1.5
  - r-kernsmooth=2.23_15
  - r-lattice=0.20_35
  - r-mass=7.3_49
  - r-matrix=1.2_14
  - r-mgcv=1.8_23
  - r-microsoftr=3.5.0.108
  - r-nlme=3.1_137
  - r-nnet=7.3_12
  - r-png=0.1_7
  - r-r6=2.2.2
  - r-recommended=3.5.1
  - r-revoioq=10.0.0
  - r-revomods=11.0.0
  - r-revoutils=11.0.0
  - r-revoutilsmath=11.0.0
  - r-rpart=4.1_13
  - r-runit=0.4.26
  - r-spatial=7.3_11
  - r-survival=2.41_3
  - samtools=1.9
  - star=2.5.2b
  - subread=2.0.1=hed695b0_0
  - trim-galore=0.4.1
  - pip:
    - multiqc==0.4