Skip to content

Commit 1f29488

Browse files
Update README.md
1 parent 9090539 commit 1f29488

File tree

1 file changed

+6
-5
lines changed

1 file changed

+6
-5
lines changed

README.md

Lines changed: 6 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -76,13 +76,14 @@ Three samples were classified; the first column has the percentage of similitud
7676
Threshold values for delimiting a taxon were taken from [Yarza et al. 2014. Nat Rev Microbiol 12:635-645](http://www.nature.com/nrmicro/journal/v12/n9/full/nrmicro3330.html).
7777

7878
### How fast?
79-
18,882 16S V4 sequences (mean length 232.6 bases, 4.35 million bases) in 3 files were classified in a 64 core 128 GB RAM Dell PowerEdge R810 server with the following results:
79+
22,267 16S V4 sequences (mean length 228.7 bases, 5.18 million bases) in 4 files were classified in a 64 core 128 GB RAM Dell PowerEdge R810 server with the following results:
8080

8181
| Database | DB size (MB) | Time |
82-
| --- | ---: | ---:|
83-
| EzBioCloud-1.5 | 96.6 | **7 sec** |
84-
| SILVA_128 | 303.4 | **25 sec** |
85-
| RDP_11.5 | 3,800.0 | **5:33 min** |
82+
| --- | ---: | ---:| ---:|
83+
| EzBioCloud-1.5 | 96.6 | **22 sec** |
84+
| SILVA_128 | 303.4 | **1:11 min** |
85+
| RDP_11.5 | 3,200.0 | **12:11 min** |
86+
| RDP_11.5 V3-V4 | 1,018 | **3:16 min** |
8687

8788
Time depends on many factors, most notably:
8889
- **Size of the database**.

0 commit comments

Comments
 (0)