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README.md

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Library/package for reading/writing microbiology DNA sample/chromatogram files (ABI, AB, AB1, SCF, FASTA, SEQ, etc).
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Requires LightSaber base library.
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Has support for:
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* SNP (Single Nucleotide Polymorphism)
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* QV (base Quality Value)
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* Integrated trimming engine (automatic bad-end trimming)
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* Recalling of bad (N) peaks using proprietary algorithm
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* Automatic sequence direction (F/R)
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* Reading and displaying the chromatogram data
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Has support for:
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* SNP (Single Nucleotide Polymorphism)
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* QV (base Quality Value)
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* Integrated trimming engine (automatic bad-end trimming)
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* Recalling of bad (N) peaks using proprietary algorithm
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* Automatic sequence direction (F/R)
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* Reading and displaying the chromatogram data
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* read/write SCF chromatogram files
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* read ABI/AB/AB1/AB! chromatogram files
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* read/write FASTA chromatogram files
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-----------
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Features:
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+ TrimEngine
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+ Assign(TSample)
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+ Average Quality
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+ Highest QV
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+ FindAdaptor
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+ Clip Left/Right
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+ Good Bases
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+ can work with sequences with length over 65535 bases
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+ Implements a single SFF read
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Features:
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+ TrimEngine
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+ Assign(TSample)
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+ Average Quality
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+ Highest QV
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+ FindAdaptor
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+ Clip Left/Right
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+ Good Bases
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+ can work with sequences with length over 65535 bases
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+ Implements a single SFF read
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+ NoOfGoodBases
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+ GoodBases
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+ Conversion to Fasta
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+ BuildQVGraph
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etc
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+ GoodBases
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+ Conversion to Fasta
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+ BuildQVGraph
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etc
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Next to come:
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* Code to import NextGen DNA sequence files such as SFF. SFQ, FAS.
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* Code to import NextGen DNA sequence files such as SFF. SFQ, FAS.
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* DNA sequence assembly
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* SNMP / Mutation detection
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