|
3 | 3 | Library/package for reading/writing microbiology DNA sample/chromatogram files (ABI, AB, AB1, SCF, FASTA, SEQ, etc).
|
4 | 4 | Requires LightSaber base library.
|
5 | 5 |
|
6 |
| -Has support for: |
7 |
| - * SNP (Single Nucleotide Polymorphism) |
8 |
| - * QV (base Quality Value) |
9 |
| - * Integrated trimming engine (automatic bad-end trimming) |
10 |
| - * Recalling of bad (N) peaks using proprietary algorithm |
11 |
| - * Automatic sequence direction (F/R) |
12 |
| - * Reading and displaying the chromatogram data |
| 6 | +Has support for: |
| 7 | + * SNP (Single Nucleotide Polymorphism) |
| 8 | + * QV (base Quality Value) |
| 9 | + * Integrated trimming engine (automatic bad-end trimming) |
| 10 | + * Recalling of bad (N) peaks using proprietary algorithm |
| 11 | + * Automatic sequence direction (F/R) |
| 12 | + * Reading and displaying the chromatogram data |
13 | 13 | * read/write SCF chromatogram files
|
14 | 14 | * read ABI/AB/AB1/AB! chromatogram files
|
15 | 15 | * read/write FASTA chromatogram files
|
@@ -38,24 +38,24 @@ The import functionality is accessible with a call to a single function: TCubeIm
|
38 | 38 |
|
39 | 39 | -----------
|
40 | 40 |
|
41 |
| - Features: |
42 |
| - + TrimEngine |
43 |
| - + Assign(TSample) |
44 |
| - + Average Quality |
45 |
| - + Highest QV |
46 |
| - + FindAdaptor |
47 |
| - + Clip Left/Right |
48 |
| - + Good Bases |
49 |
| - + can work with sequences with length over 65535 bases |
50 |
| - + Implements a single SFF read |
| 41 | + Features: |
| 42 | + + TrimEngine |
| 43 | + + Assign(TSample) |
| 44 | + + Average Quality |
| 45 | + + Highest QV |
| 46 | + + FindAdaptor |
| 47 | + + Clip Left/Right |
| 48 | + + Good Bases |
| 49 | + + can work with sequences with length over 65535 bases |
| 50 | + + Implements a single SFF read |
51 | 51 | + NoOfGoodBases
|
52 |
| - + GoodBases |
53 |
| - + Conversion to Fasta |
54 |
| - + BuildQVGraph |
55 |
| - etc |
| 52 | + + GoodBases |
| 53 | + + Conversion to Fasta |
| 54 | + + BuildQVGraph |
| 55 | + etc |
56 | 56 |
|
57 | 57 | Next to come:
|
58 |
| - * Code to import NextGen DNA sequence files such as SFF. SFQ, FAS. |
| 58 | + * Code to import NextGen DNA sequence files such as SFF. SFQ, FAS. |
59 | 59 | * DNA sequence assembly
|
60 | 60 | * SNMP / Mutation detection
|
61 | 61 |
|
|
0 commit comments